Experiment: Amylose from potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17930 and HMPREF1058_RS17925 are separated by 180 nucleotides HMPREF1058_RS17925 and HMPREF1058_RS17920 are separated by 482 nucleotides
HMPREF1058_RS17930: HMPREF1058_RS17930 - glycogen debranching enzyme N-terminal domain-containing protein, at 297,590 to 299,530
_RS17930
HMPREF1058_RS17925: HMPREF1058_RS17925 - rhomboid family intramembrane serine protease, at 299,711 to 300,376
_RS17925
HMPREF1058_RS17920: HMPREF1058_RS17920 - formate-dependent phosphoribosylglycinamide formyltransferase, at 300,859 to 302,028
_RS17920
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 298.723 kb on + strand, within HMPREF1058_RS17930 at 298.774 kb on + strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.830 kb on - strand, within HMPREF1058_RS17930 at 298.964 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.966 kb on - strand, within HMPREF1058_RS17930 at 298.968 kb on - strand, within HMPREF1058_RS17930 at 299.053 kb on + strand, within HMPREF1058_RS17930 at 299.056 kb on - strand, within HMPREF1058_RS17930 at 299.101 kb on + strand, within HMPREF1058_RS17930 at 299.129 kb on - strand, within HMPREF1058_RS17930 at 299.130 kb on + strand, within HMPREF1058_RS17930 at 299.204 kb on + strand, within HMPREF1058_RS17930 at 299.205 kb on - strand at 299.205 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.207 kb on - strand, within HMPREF1058_RS17930 at 299.212 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.244 kb on + strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.245 kb on - strand, within HMPREF1058_RS17930 at 299.265 kb on + strand, within HMPREF1058_RS17930 at 299.281 kb on - strand, within HMPREF1058_RS17930 at 299.318 kb on + strand, within HMPREF1058_RS17930 at 299.348 kb on + strand at 299.348 kb on + strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.349 kb on - strand at 299.431 kb on + strand at 299.520 kb on - strand at 299.520 kb on - strand at 299.530 kb on + strand at 299.531 kb on - strand at 299.531 kb on - strand at 299.542 kb on + strand at 299.677 kb on - strand at 299.679 kb on + strand at 299.699 kb on - strand at 299.834 kb on + strand, within HMPREF1058_RS17925 at 299.856 kb on + strand, within HMPREF1058_RS17925 at 299.905 kb on - strand, within HMPREF1058_RS17925 at 299.938 kb on - strand, within HMPREF1058_RS17925 at 299.978 kb on - strand, within HMPREF1058_RS17925 at 299.979 kb on + strand, within HMPREF1058_RS17925 at 300.021 kb on + strand, within HMPREF1058_RS17925 at 300.043 kb on + strand, within HMPREF1058_RS17925 at 300.058 kb on + strand, within HMPREF1058_RS17925 at 300.060 kb on + strand, within HMPREF1058_RS17925 at 300.123 kb on + strand, within HMPREF1058_RS17925 at 300.151 kb on - strand, within HMPREF1058_RS17925 at 300.152 kb on + strand, within HMPREF1058_RS17925 at 300.452 kb on + strand at 300.481 kb on - strand at 300.481 kb on - strand at 300.524 kb on + strand at 300.525 kb on - strand at 300.529 kb on + strand at 300.644 kb on + strand at 300.644 kb on + strand at 300.677 kb on + strand at 300.682 kb on + strand at 300.748 kb on + strand at 300.838 kb on + strand at 300.839 kb on - strand at 300.850 kb on + strand at 300.851 kb on - strand at 300.851 kb on - strand at 300.857 kb on + strand at 300.857 kb on + strand at 300.936 kb on - strand at 300.972 kb on + strand at 300.973 kb on - strand at 300.991 kb on - strand, within HMPREF1058_RS17920 at 300.999 kb on - strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/ml (C) remove 298,723 + HMPREF1058_RS17930 0.58 +2.2 298,774 + HMPREF1058_RS17930 0.61 -1.5 298,830 - HMPREF1058_RS17930 0.64 -1.4 298,830 - HMPREF1058_RS17930 0.64 +1.5 298,964 - HMPREF1058_RS17930 0.71 +1.1 298,966 - HMPREF1058_RS17930 0.71 +3.0 298,966 - HMPREF1058_RS17930 0.71 +1.2 298,966 - HMPREF1058_RS17930 0.71 -0.1 298,968 - HMPREF1058_RS17930 0.71 +0.9 299,053 + HMPREF1058_RS17930 0.75 +0.5 299,056 - HMPREF1058_RS17930 0.76 -2.7 299,101 + HMPREF1058_RS17930 0.78 +0.3 299,129 - HMPREF1058_RS17930 0.79 +0.5 299,130 + HMPREF1058_RS17930 0.79 -0.6 299,204 + HMPREF1058_RS17930 0.83 -0.7 299,205 - -0.2 299,205 - HMPREF1058_RS17930 0.83 +0.1 299,207 - HMPREF1058_RS17930 0.83 +1.8 299,207 - HMPREF1058_RS17930 0.83 +2.9 299,212 + HMPREF1058_RS17930 0.84 +2.3 299,244 + HMPREF1058_RS17930 0.85 -0.1 299,244 + HMPREF1058_RS17930 0.85 -2.4 299,245 - HMPREF1058_RS17930 0.85 -2.6 299,245 - HMPREF1058_RS17930 0.85 -0.4 299,245 - HMPREF1058_RS17930 0.85 +1.5 299,245 - HMPREF1058_RS17930 0.85 +1.5 299,265 + HMPREF1058_RS17930 0.86 +0.5 299,281 - HMPREF1058_RS17930 0.87 -1.6 299,318 + HMPREF1058_RS17930 0.89 +2.2 299,348 + -1.4 299,348 + -0.5 299,349 - +1.0 299,349 - +0.8 299,349 - -2.4 299,431 + -0.7 299,520 - +1.6 299,520 - -0.6 299,530 + -0.4 299,531 - +1.0 299,531 - -1.0 299,542 + -1.6 299,677 - +1.1 299,679 + -1.6 299,699 - -0.7 299,834 + HMPREF1058_RS17925 0.18 -0.9 299,856 + HMPREF1058_RS17925 0.22 -0.8 299,905 - HMPREF1058_RS17925 0.29 -1.9 299,938 - HMPREF1058_RS17925 0.34 -0.7 299,978 - HMPREF1058_RS17925 0.40 +2.1 299,979 + HMPREF1058_RS17925 0.40 -0.4 300,021 + HMPREF1058_RS17925 0.47 -2.8 300,043 + HMPREF1058_RS17925 0.50 +0.8 300,058 + HMPREF1058_RS17925 0.52 -2.0 300,060 + HMPREF1058_RS17925 0.52 -0.2 300,123 + HMPREF1058_RS17925 0.62 -1.7 300,151 - HMPREF1058_RS17925 0.66 +0.5 300,152 + HMPREF1058_RS17925 0.66 +1.1 300,452 + -2.9 300,481 - +0.6 300,481 - +0.5 300,524 + -0.4 300,525 - -0.1 300,529 + -1.4 300,644 + +0.0 300,644 + -1.6 300,677 + +0.7 300,682 + -1.7 300,748 + -0.2 300,838 + -0.5 300,839 - -1.3 300,850 + +1.0 300,851 - -2.0 300,851 - +1.3 300,857 + -1.1 300,857 + -2.1 300,936 - +0.3 300,972 + -1.7 300,973 - +1.0 300,991 - HMPREF1058_RS17920 0.11 +0.7 300,999 - HMPREF1058_RS17920 0.12 -1.4 301,002 + HMPREF1058_RS17920 0.12 -1.0 301,002 + HMPREF1058_RS17920 0.12 +3.1
Or see this region's nucleotide sequence