Experiment: Amylose from potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06905 and HMPREF1058_RS06900 are separated by 117 nucleotides HMPREF1058_RS06900 and HMPREF1058_RS06895 are separated by 75 nucleotides HMPREF1058_RS06895 and HMPREF1058_RS06890 are separated by 57 nucleotides
HMPREF1058_RS06905: HMPREF1058_RS06905 - hypothetical protein, at 364,409 to 365,134
_RS06905
HMPREF1058_RS06900: HMPREF1058_RS06900 - P-II family nitrogen regulator, at 365,252 to 365,608
_RS06900
HMPREF1058_RS06895: HMPREF1058_RS06895 - ammonium transporter, at 365,684 to 367,042
_RS06895
HMPREF1058_RS06890: HMPREF1058_RS06890 - glutamine synthetase III, at 367,100 to 369,289
_RS06890
Position (kb) 365
366
367
368 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 364.776 kb on + strand, within HMPREF1058_RS06905 at 364.776 kb on + strand, within HMPREF1058_RS06905 at 364.863 kb on - strand, within HMPREF1058_RS06905 at 364.872 kb on - strand, within HMPREF1058_RS06905 at 364.875 kb on + strand, within HMPREF1058_RS06905 at 364.876 kb on - strand, within HMPREF1058_RS06905 at 364.876 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 364.956 kb on - strand, within HMPREF1058_RS06905 at 365.188 kb on + strand at 365.189 kb on - strand at 365.234 kb on + strand at 365.235 kb on - strand at 365.350 kb on - strand, within HMPREF1058_RS06900 at 365.381 kb on - strand, within HMPREF1058_RS06900 at 365.381 kb on - strand, within HMPREF1058_RS06900 at 365.399 kb on + strand, within HMPREF1058_RS06900 at 365.400 kb on - strand, within HMPREF1058_RS06900 at 365.692 kb on + strand at 365.694 kb on + strand at 365.700 kb on + strand at 365.701 kb on - strand at 365.701 kb on - strand at 365.823 kb on + strand, within HMPREF1058_RS06895 at 365.841 kb on + strand, within HMPREF1058_RS06895 at 365.842 kb on - strand, within HMPREF1058_RS06895 at 366.155 kb on + strand, within HMPREF1058_RS06895 at 366.165 kb on - strand, within HMPREF1058_RS06895 at 366.167 kb on - strand, within HMPREF1058_RS06895 at 366.167 kb on - strand, within HMPREF1058_RS06895 at 366.302 kb on - strand at 366.698 kb on - strand, within HMPREF1058_RS06895 at 366.727 kb on - strand, within HMPREF1058_RS06895 at 366.858 kb on - strand, within HMPREF1058_RS06895 at 367.035 kb on - strand at 367.035 kb on - strand at 367.100 kb on - strand at 367.229 kb on + strand at 367.731 kb on - strand, within HMPREF1058_RS06890 at 367.751 kb on + strand, within HMPREF1058_RS06890 at 367.752 kb on - strand, within HMPREF1058_RS06890 at 367.860 kb on - strand, within HMPREF1058_RS06890 at 367.860 kb on - strand, within HMPREF1058_RS06890 at 368.020 kb on + strand, within HMPREF1058_RS06890
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/ml (C) remove 364,776 + HMPREF1058_RS06905 0.51 -1.9 364,776 + HMPREF1058_RS06905 0.51 -1.8 364,863 - HMPREF1058_RS06905 0.63 +2.2 364,872 - HMPREF1058_RS06905 0.64 +0.4 364,875 + HMPREF1058_RS06905 0.64 -0.6 364,876 - HMPREF1058_RS06905 0.64 -3.1 364,876 - HMPREF1058_RS06905 0.64 +1.6 364,956 - HMPREF1058_RS06905 0.75 -2.0 364,956 - HMPREF1058_RS06905 0.75 -3.9 364,956 - HMPREF1058_RS06905 0.75 +0.7 364,956 - HMPREF1058_RS06905 0.75 -0.9 365,188 + -1.1 365,189 - -1.5 365,234 + +0.0 365,235 - +0.7 365,350 - HMPREF1058_RS06900 0.27 -1.6 365,381 - HMPREF1058_RS06900 0.36 +0.7 365,381 - HMPREF1058_RS06900 0.36 -1.0 365,399 + HMPREF1058_RS06900 0.41 -3.0 365,400 - HMPREF1058_RS06900 0.41 +0.2 365,692 + -0.7 365,694 + +0.9 365,700 + -0.1 365,701 - +2.1 365,701 - +0.3 365,823 + HMPREF1058_RS06895 0.10 -0.9 365,841 + HMPREF1058_RS06895 0.12 -0.6 365,842 - HMPREF1058_RS06895 0.12 -0.3 366,155 + HMPREF1058_RS06895 0.35 -1.3 366,165 - HMPREF1058_RS06895 0.35 -0.8 366,167 - HMPREF1058_RS06895 0.36 -2.5 366,167 - HMPREF1058_RS06895 0.36 +0.4 366,302 - +0.4 366,698 - HMPREF1058_RS06895 0.75 -0.7 366,727 - HMPREF1058_RS06895 0.77 -0.6 366,858 - HMPREF1058_RS06895 0.86 +1.0 367,035 - -0.4 367,035 - -2.4 367,100 - +1.9 367,229 + +0.0 367,731 - HMPREF1058_RS06890 0.29 -0.9 367,751 + HMPREF1058_RS06890 0.30 +2.2 367,752 - HMPREF1058_RS06890 0.30 -0.1 367,860 - HMPREF1058_RS06890 0.35 -1.4 367,860 - HMPREF1058_RS06890 0.35 -1.9 368,020 + HMPREF1058_RS06890 0.42 +0.1
Or see this region's nucleotide sequence