Experiment: amylopectin from maize 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotides HMPREF1058_RS17365 and HMPREF1058_RS17360 are separated by 527 nucleotides HMPREF1058_RS17360 and HMPREF1058_RS17355 are separated by 362 nucleotides
HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161
_RS17370
HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519
_RS17365
HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564
_RS17360
HMPREF1058_RS17355: HMPREF1058_RS17355 - glycosyltransferase family 4 protein, at 462,927 to 464,015
_RS17355
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 460.095 kb on - strand, within HMPREF1058_RS17370 at 460.160 kb on - strand at 460.160 kb on - strand at 460.270 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand at 460.390 kb on - strand, within HMPREF1058_RS17365 at 460.483 kb on - strand, within HMPREF1058_RS17365 at 460.542 kb on + strand at 460.542 kb on + strand at 460.633 kb on + strand at 460.640 kb on + strand at 460.670 kb on + strand at 460.670 kb on + strand at 460.671 kb on - strand at 460.742 kb on - strand at 460.748 kb on + strand at 460.748 kb on + strand at 460.749 kb on - strand at 460.752 kb on - strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.831 kb on + strand at 460.831 kb on + strand at 460.904 kb on - strand at 460.941 kb on - strand at 460.994 kb on + strand at 460.994 kb on + strand at 460.999 kb on - strand at 461.002 kb on - strand at 461.102 kb on + strand at 461.102 kb on + strand at 461.107 kb on - strand at 461.116 kb on - strand at 461.127 kb on - strand at 461.186 kb on - strand at 461.202 kb on + strand, within HMPREF1058_RS17360 at 461.203 kb on - strand, within HMPREF1058_RS17360 at 461.203 kb on - strand, within HMPREF1058_RS17360 at 461.249 kb on + strand, within HMPREF1058_RS17360 at 461.304 kb on - strand, within HMPREF1058_RS17360 at 461.318 kb on + strand, within HMPREF1058_RS17360 at 461.328 kb on - strand, within HMPREF1058_RS17360 at 461.328 kb on - strand, within HMPREF1058_RS17360 at 461.349 kb on - strand, within HMPREF1058_RS17360 at 461.349 kb on - strand, within HMPREF1058_RS17360 at 461.353 kb on - strand, within HMPREF1058_RS17360 at 461.353 kb on - strand at 461.353 kb on - strand, within HMPREF1058_RS17360 at 461.376 kb on - strand, within HMPREF1058_RS17360 at 461.385 kb on - strand, within HMPREF1058_RS17360 at 461.396 kb on + strand, within HMPREF1058_RS17360 at 461.397 kb on - strand, within HMPREF1058_RS17360 at 461.402 kb on + strand, within HMPREF1058_RS17360 at 461.445 kb on - strand, within HMPREF1058_RS17360 at 461.463 kb on - strand, within HMPREF1058_RS17360 at 461.473 kb on - strand, within HMPREF1058_RS17360 at 461.474 kb on + strand, within HMPREF1058_RS17360 at 461.606 kb on + strand, within HMPREF1058_RS17360 at 461.616 kb on + strand, within HMPREF1058_RS17360 at 461.616 kb on + strand, within HMPREF1058_RS17360 at 461.666 kb on - strand, within HMPREF1058_RS17360 at 461.695 kb on + strand, within HMPREF1058_RS17360 at 461.700 kb on + strand, within HMPREF1058_RS17360 at 461.700 kb on + strand, within HMPREF1058_RS17360 at 461.709 kb on - strand, within HMPREF1058_RS17360 at 461.749 kb on - strand, within HMPREF1058_RS17360 at 461.814 kb on + strand, within HMPREF1058_RS17360 at 461.833 kb on - strand, within HMPREF1058_RS17360 at 461.842 kb on + strand, within HMPREF1058_RS17360 at 461.955 kb on + strand, within HMPREF1058_RS17360 at 462.016 kb on - strand, within HMPREF1058_RS17360 at 462.038 kb on - strand, within HMPREF1058_RS17360 at 462.038 kb on - strand, within HMPREF1058_RS17360 at 462.060 kb on + strand, within HMPREF1058_RS17360 at 462.061 kb on - strand, within HMPREF1058_RS17360 at 462.115 kb on - strand, within HMPREF1058_RS17360 at 462.118 kb on + strand, within HMPREF1058_RS17360 at 462.138 kb on - strand, within HMPREF1058_RS17360 at 462.149 kb on + strand, within HMPREF1058_RS17360 at 462.149 kb on + strand, within HMPREF1058_RS17360 at 462.151 kb on + strand, within HMPREF1058_RS17360 at 462.152 kb on - strand, within HMPREF1058_RS17360 at 462.152 kb on - strand, within HMPREF1058_RS17360 at 462.177 kb on + strand, within HMPREF1058_RS17360 at 462.199 kb on + strand, within HMPREF1058_RS17360 at 462.276 kb on - strand, within HMPREF1058_RS17360 at 462.276 kb on - strand, within HMPREF1058_RS17360 at 462.280 kb on + strand, within HMPREF1058_RS17360 at 462.298 kb on - strand, within HMPREF1058_RS17360 at 462.298 kb on - strand, within HMPREF1058_RS17360 at 462.303 kb on - strand, within HMPREF1058_RS17360 at 462.335 kb on + strand, within HMPREF1058_RS17360 at 462.336 kb on - strand, within HMPREF1058_RS17360 at 462.342 kb on - strand, within HMPREF1058_RS17360 at 462.387 kb on + strand, within HMPREF1058_RS17360 at 462.389 kb on + strand, within HMPREF1058_RS17360 at 462.414 kb on - strand at 462.417 kb on + strand at 462.497 kb on + strand at 462.533 kb on + strand at 462.579 kb on + strand at 462.580 kb on - strand at 462.581 kb on + strand at 462.582 kb on - strand at 462.624 kb on - strand at 462.727 kb on - strand at 462.730 kb on + strand at 462.810 kb on - strand at 462.849 kb on + strand at 462.870 kb on - strand at 462.883 kb on + strand at 462.884 kb on - strand at 462.944 kb on - strand at 463.014 kb on - strand at 463.014 kb on - strand at 463.048 kb on + strand, within HMPREF1058_RS17355 at 463.058 kb on - strand, within HMPREF1058_RS17355 at 463.060 kb on - strand, within HMPREF1058_RS17355 at 463.060 kb on - strand, within HMPREF1058_RS17355 at 463.060 kb on - strand, within HMPREF1058_RS17355 at 463.150 kb on - strand, within HMPREF1058_RS17355 at 463.154 kb on + strand, within HMPREF1058_RS17355 at 463.157 kb on - strand, within HMPREF1058_RS17355 at 463.160 kb on - strand, within HMPREF1058_RS17355 at 463.186 kb on - strand, within HMPREF1058_RS17355 at 463.186 kb on - strand, within HMPREF1058_RS17355 at 463.307 kb on - strand, within HMPREF1058_RS17355 at 463.309 kb on - strand, within HMPREF1058_RS17355 at 463.321 kb on + strand, within HMPREF1058_RS17355 at 463.321 kb on + strand, within HMPREF1058_RS17355 at 463.363 kb on - strand, within HMPREF1058_RS17355 at 463.374 kb on + strand, within HMPREF1058_RS17355 at 463.376 kb on + strand, within HMPREF1058_RS17355 at 463.395 kb on + strand, within HMPREF1058_RS17355 at 463.413 kb on - strand, within HMPREF1058_RS17355 at 463.484 kb on + strand, within HMPREF1058_RS17355 at 463.517 kb on - strand, within HMPREF1058_RS17355 at 463.517 kb on - strand, within HMPREF1058_RS17355 at 463.526 kb on - strand, within HMPREF1058_RS17355
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize 2.5 mg/ml (C) remove 460,095 - HMPREF1058_RS17370 0.87 -0.3 460,160 - -0.5 460,160 - -0.3 460,270 - HMPREF1058_RS17365 0.14 -0.3 460,303 - HMPREF1058_RS17365 0.25 +1.1 460,303 - +3.2 460,390 - HMPREF1058_RS17365 0.55 +0.0 460,483 - HMPREF1058_RS17365 0.87 +2.2 460,542 + +0.3 460,542 + -0.5 460,633 + +0.4 460,640 + -0.5 460,670 + -0.8 460,670 + -1.6 460,671 - +1.4 460,742 - -1.5 460,748 + -0.8 460,748 + +1.1 460,749 - +0.1 460,752 - +0.7 460,814 + +3.5 460,814 + +3.1 460,814 + -1.6 460,831 + -0.2 460,831 + -0.8 460,904 - +1.7 460,941 - -2.6 460,994 + +0.1 460,994 + -2.0 460,999 - +1.7 461,002 - -0.4 461,102 + -1.2 461,102 + +2.7 461,107 - +0.8 461,116 - -2.9 461,127 - +1.2 461,186 - -0.6 461,202 + HMPREF1058_RS17360 0.10 -0.4 461,203 - HMPREF1058_RS17360 0.10 -0.2 461,203 - HMPREF1058_RS17360 0.10 +2.4 461,249 + HMPREF1058_RS17360 0.13 -0.3 461,304 - HMPREF1058_RS17360 0.17 -0.2 461,318 + HMPREF1058_RS17360 0.18 -2.5 461,328 - HMPREF1058_RS17360 0.19 -0.8 461,328 - HMPREF1058_RS17360 0.19 +0.9 461,349 - HMPREF1058_RS17360 0.20 +1.0 461,349 - HMPREF1058_RS17360 0.20 +0.9 461,353 - HMPREF1058_RS17360 0.20 +1.8 461,353 - +2.2 461,353 - HMPREF1058_RS17360 0.20 +1.4 461,376 - HMPREF1058_RS17360 0.22 +0.2 461,385 - HMPREF1058_RS17360 0.22 +0.9 461,396 + HMPREF1058_RS17360 0.23 +1.3 461,397 - HMPREF1058_RS17360 0.23 -0.2 461,402 + HMPREF1058_RS17360 0.23 -2.9 461,445 - HMPREF1058_RS17360 0.26 +1.7 461,463 - HMPREF1058_RS17360 0.27 +1.0 461,473 - HMPREF1058_RS17360 0.28 -1.9 461,474 + HMPREF1058_RS17360 0.28 -0.1 461,606 + HMPREF1058_RS17360 0.37 -0.1 461,616 + HMPREF1058_RS17360 0.37 +1.4 461,616 + HMPREF1058_RS17360 0.37 +0.7 461,666 - HMPREF1058_RS17360 0.41 -0.0 461,695 + HMPREF1058_RS17360 0.43 -0.9 461,700 + HMPREF1058_RS17360 0.43 +0.8 461,700 + HMPREF1058_RS17360 0.43 +0.6 461,709 - HMPREF1058_RS17360 0.44 +0.8 461,749 - HMPREF1058_RS17360 0.46 -0.8 461,814 + HMPREF1058_RS17360 0.51 +0.3 461,833 - HMPREF1058_RS17360 0.52 +1.7 461,842 + HMPREF1058_RS17360 0.52 -0.3 461,955 + HMPREF1058_RS17360 0.60 -1.1 462,016 - HMPREF1058_RS17360 0.64 +0.1 462,038 - HMPREF1058_RS17360 0.65 -2.0 462,038 - HMPREF1058_RS17360 0.65 -0.5 462,060 + HMPREF1058_RS17360 0.67 +0.4 462,061 - HMPREF1058_RS17360 0.67 -1.2 462,115 - HMPREF1058_RS17360 0.70 -1.2 462,118 + HMPREF1058_RS17360 0.71 -2.5 462,138 - HMPREF1058_RS17360 0.72 +1.8 462,149 + HMPREF1058_RS17360 0.73 +3.8 462,149 + HMPREF1058_RS17360 0.73 +0.8 462,151 + HMPREF1058_RS17360 0.73 -0.2 462,152 - HMPREF1058_RS17360 0.73 +1.0 462,152 - HMPREF1058_RS17360 0.73 -0.3 462,177 + HMPREF1058_RS17360 0.74 +0.9 462,199 + HMPREF1058_RS17360 0.76 -0.3 462,276 - HMPREF1058_RS17360 0.81 +1.7 462,276 - HMPREF1058_RS17360 0.81 +2.2 462,280 + HMPREF1058_RS17360 0.81 +1.4 462,298 - HMPREF1058_RS17360 0.82 -1.7 462,298 - HMPREF1058_RS17360 0.82 +1.2 462,303 - HMPREF1058_RS17360 0.83 -0.8 462,335 + HMPREF1058_RS17360 0.85 -0.8 462,336 - HMPREF1058_RS17360 0.85 -0.9 462,342 - HMPREF1058_RS17360 0.85 +1.4 462,387 + HMPREF1058_RS17360 0.88 -1.7 462,389 + HMPREF1058_RS17360 0.88 +0.4 462,414 - +3.7 462,417 + +1.3 462,497 + +0.9 462,533 + +0.7 462,579 + +2.3 462,580 - -0.6 462,581 + +0.2 462,582 - -0.8 462,624 - +0.9 462,727 - +1.7 462,730 + -2.9 462,810 - -0.9 462,849 + -0.5 462,870 - +0.2 462,883 + +1.7 462,884 - -1.9 462,944 - +0.3 463,014 - +1.3 463,014 - -0.6 463,048 + HMPREF1058_RS17355 0.11 +3.2 463,058 - HMPREF1058_RS17355 0.12 +0.5 463,060 - HMPREF1058_RS17355 0.12 +2.7 463,060 - HMPREF1058_RS17355 0.12 +1.8 463,060 - HMPREF1058_RS17355 0.12 +3.2 463,150 - HMPREF1058_RS17355 0.20 +2.2 463,154 + HMPREF1058_RS17355 0.21 -2.3 463,157 - HMPREF1058_RS17355 0.21 -3.1 463,160 - HMPREF1058_RS17355 0.21 +2.2 463,186 - HMPREF1058_RS17355 0.24 +2.0 463,186 - HMPREF1058_RS17355 0.24 +3.2 463,307 - HMPREF1058_RS17355 0.35 +2.8 463,309 - HMPREF1058_RS17355 0.35 -2.0 463,321 + HMPREF1058_RS17355 0.36 -1.2 463,321 + HMPREF1058_RS17355 0.36 -0.2 463,363 - HMPREF1058_RS17355 0.40 +0.0 463,374 + HMPREF1058_RS17355 0.41 -0.3 463,376 + HMPREF1058_RS17355 0.41 +0.5 463,395 + HMPREF1058_RS17355 0.43 +3.7 463,413 - HMPREF1058_RS17355 0.45 -0.8 463,484 + HMPREF1058_RS17355 0.51 +3.5 463,517 - HMPREF1058_RS17355 0.54 +0.4 463,517 - HMPREF1058_RS17355 0.54 +0.8 463,526 - HMPREF1058_RS17355 0.55 -0.3
Or see this region's nucleotide sequence