Experiment: polygalacturonic 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07565 and HMPREF1058_RS07560 are separated by 91 nucleotides HMPREF1058_RS07560 and HMPREF1058_RS07555 are separated by 9 nucleotides HMPREF1058_RS07555 and HMPREF1058_RS07550 are separated by 115 nucleotides
HMPREF1058_RS07565: HMPREF1058_RS07565 - transporter, at 189,772 to 190,731
_RS07565
HMPREF1058_RS07560: HMPREF1058_RS07560 - pyridoxal phosphate-dependent aminotransferase, at 190,823 to 191,986
_RS07560
HMPREF1058_RS07555: HMPREF1058_RS07555 - DUF3737 family protein, at 191,996 to 192,862
_RS07555
HMPREF1058_RS07550: HMPREF1058_RS07550 - alpha/beta hydrolase, at 192,978 to 194,033
_RS07550
Position (kb) 190
191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 189.943 kb on - strand, within HMPREF1058_RS07565 at 190.030 kb on - strand, within HMPREF1058_RS07565 at 190.046 kb on - strand, within HMPREF1058_RS07565 at 190.070 kb on - strand, within HMPREF1058_RS07565 at 190.070 kb on - strand, within HMPREF1058_RS07565 at 190.104 kb on + strand, within HMPREF1058_RS07565 at 190.133 kb on + strand, within HMPREF1058_RS07565 at 190.134 kb on - strand, within HMPREF1058_RS07565 at 190.178 kb on - strand, within HMPREF1058_RS07565 at 190.178 kb on - strand, within HMPREF1058_RS07565 at 190.246 kb on - strand, within HMPREF1058_RS07565 at 190.246 kb on - strand, within HMPREF1058_RS07565 at 190.246 kb on - strand, within HMPREF1058_RS07565 at 190.246 kb on - strand, within HMPREF1058_RS07565 at 190.342 kb on + strand, within HMPREF1058_RS07565 at 190.394 kb on - strand, within HMPREF1058_RS07565 at 190.456 kb on - strand, within HMPREF1058_RS07565 at 190.467 kb on - strand, within HMPREF1058_RS07565 at 190.549 kb on + strand, within HMPREF1058_RS07565 at 190.550 kb on - strand, within HMPREF1058_RS07565 at 190.560 kb on + strand, within HMPREF1058_RS07565 at 190.561 kb on - strand, within HMPREF1058_RS07565 at 190.598 kb on + strand at 190.599 kb on - strand, within HMPREF1058_RS07565 at 190.601 kb on + strand, within HMPREF1058_RS07565 at 190.605 kb on + strand, within HMPREF1058_RS07565 at 190.630 kb on - strand, within HMPREF1058_RS07565 at 190.661 kb on - strand at 190.741 kb on - strand at 190.754 kb on + strand at 190.755 kb on - strand at 190.758 kb on + strand at 190.759 kb on - strand at 190.778 kb on + strand at 190.782 kb on + strand at 190.817 kb on + strand at 190.817 kb on + strand at 190.818 kb on - strand at 190.818 kb on - strand at 190.818 kb on - strand at 190.874 kb on - strand at 190.874 kb on - strand at 190.926 kb on + strand at 190.926 kb on + strand at 190.926 kb on + strand at 190.926 kb on + strand at 190.994 kb on + strand, within HMPREF1058_RS07560 at 191.089 kb on + strand, within HMPREF1058_RS07560 at 191.090 kb on - strand, within HMPREF1058_RS07560 at 191.090 kb on - strand, within HMPREF1058_RS07560 at 191.092 kb on - strand, within HMPREF1058_RS07560 at 191.151 kb on + strand, within HMPREF1058_RS07560 at 191.151 kb on + strand, within HMPREF1058_RS07560 at 191.152 kb on - strand, within HMPREF1058_RS07560 at 191.171 kb on + strand, within HMPREF1058_RS07560 at 191.171 kb on + strand, within HMPREF1058_RS07560 at 191.172 kb on - strand, within HMPREF1058_RS07560 at 191.254 kb on + strand, within HMPREF1058_RS07560 at 191.303 kb on + strand, within HMPREF1058_RS07560 at 191.303 kb on + strand, within HMPREF1058_RS07560 at 191.303 kb on + strand, within HMPREF1058_RS07560 at 191.304 kb on - strand, within HMPREF1058_RS07560 at 191.304 kb on - strand, within HMPREF1058_RS07560 at 191.304 kb on - strand, within HMPREF1058_RS07560 at 191.304 kb on - strand, within HMPREF1058_RS07560 at 191.305 kb on + strand, within HMPREF1058_RS07560 at 191.305 kb on + strand, within HMPREF1058_RS07560 at 191.305 kb on + strand, within HMPREF1058_RS07560 at 191.305 kb on + strand, within HMPREF1058_RS07560 at 191.306 kb on - strand, within HMPREF1058_RS07560 at 191.306 kb on - strand, within HMPREF1058_RS07560 at 191.306 kb on - strand, within HMPREF1058_RS07560 at 191.306 kb on - strand, within HMPREF1058_RS07560 at 191.312 kb on + strand, within HMPREF1058_RS07560 at 191.313 kb on - strand, within HMPREF1058_RS07560 at 191.411 kb on - strand, within HMPREF1058_RS07560 at 191.440 kb on + strand, within HMPREF1058_RS07560 at 191.441 kb on - strand, within HMPREF1058_RS07560 at 191.441 kb on - strand, within HMPREF1058_RS07560 at 191.530 kb on + strand, within HMPREF1058_RS07560 at 191.537 kb on + strand, within HMPREF1058_RS07560 at 191.537 kb on + strand, within HMPREF1058_RS07560 at 191.592 kb on - strand, within HMPREF1058_RS07560 at 191.638 kb on - strand, within HMPREF1058_RS07560 at 191.658 kb on - strand, within HMPREF1058_RS07560 at 191.725 kb on - strand, within HMPREF1058_RS07560 at 191.791 kb on - strand, within HMPREF1058_RS07560 at 191.794 kb on - strand, within HMPREF1058_RS07560 at 191.846 kb on + strand, within HMPREF1058_RS07560 at 191.907 kb on - strand at 191.937 kb on + strand at 191.979 kb on + strand at 191.998 kb on - strand at 192.068 kb on + strand at 192.068 kb on + strand at 192.134 kb on - strand, within HMPREF1058_RS07555 at 192.215 kb on - strand, within HMPREF1058_RS07555 at 192.272 kb on + strand, within HMPREF1058_RS07555 at 192.412 kb on - strand, within HMPREF1058_RS07555 at 192.441 kb on + strand, within HMPREF1058_RS07555 at 192.511 kb on + strand, within HMPREF1058_RS07555 at 192.525 kb on - strand, within HMPREF1058_RS07555 at 192.564 kb on - strand, within HMPREF1058_RS07555 at 192.634 kb on - strand, within HMPREF1058_RS07555 at 192.666 kb on + strand, within HMPREF1058_RS07555 at 192.709 kb on - strand, within HMPREF1058_RS07555 at 192.709 kb on - strand, within HMPREF1058_RS07555 at 192.748 kb on + strand, within HMPREF1058_RS07555 at 192.781 kb on + strand at 192.868 kb on - strand at 192.952 kb on - strand at 192.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C) remove 189,943 - HMPREF1058_RS07565 0.18 -1.9 190,030 - HMPREF1058_RS07565 0.27 -0.4 190,046 - HMPREF1058_RS07565 0.29 -0.5 190,070 - HMPREF1058_RS07565 0.31 -0.1 190,070 - HMPREF1058_RS07565 0.31 +0.1 190,104 + HMPREF1058_RS07565 0.35 +0.0 190,133 + HMPREF1058_RS07565 0.38 -0.6 190,134 - HMPREF1058_RS07565 0.38 -1.3 190,178 - HMPREF1058_RS07565 0.42 +2.4 190,178 - HMPREF1058_RS07565 0.42 -0.1 190,246 - HMPREF1058_RS07565 0.49 -1.4 190,246 - HMPREF1058_RS07565 0.49 +2.9 190,246 - HMPREF1058_RS07565 0.49 -1.3 190,246 - HMPREF1058_RS07565 0.49 -0.1 190,342 + HMPREF1058_RS07565 0.59 +1.0 190,394 - HMPREF1058_RS07565 0.65 +0.0 190,456 - HMPREF1058_RS07565 0.71 -1.8 190,467 - HMPREF1058_RS07565 0.72 -0.5 190,549 + HMPREF1058_RS07565 0.81 -0.6 190,550 - HMPREF1058_RS07565 0.81 -1.3 190,560 + HMPREF1058_RS07565 0.82 +1.3 190,561 - HMPREF1058_RS07565 0.82 -1.3 190,598 + +1.7 190,599 - HMPREF1058_RS07565 0.86 +2.0 190,601 + HMPREF1058_RS07565 0.86 +0.8 190,605 + HMPREF1058_RS07565 0.87 +0.7 190,630 - HMPREF1058_RS07565 0.89 -1.5 190,661 - +1.4 190,741 - +1.3 190,754 + +0.1 190,755 - +1.5 190,758 + -1.8 190,759 - -1.3 190,778 + +0.7 190,782 + +0.5 190,817 + +0.9 190,817 + +0.1 190,818 - +0.5 190,818 - -1.6 190,818 - +4.1 190,874 - -1.1 190,874 - -1.1 190,926 + -0.4 190,926 + +0.5 190,926 + -0.5 190,926 + +0.0 190,994 + HMPREF1058_RS07560 0.15 -0.7 191,089 + HMPREF1058_RS07560 0.23 -1.2 191,090 - HMPREF1058_RS07560 0.23 +1.6 191,090 - HMPREF1058_RS07560 0.23 -1.7 191,092 - HMPREF1058_RS07560 0.23 +1.7 191,151 + HMPREF1058_RS07560 0.28 -0.5 191,151 + HMPREF1058_RS07560 0.28 -0.5 191,152 - HMPREF1058_RS07560 0.28 -1.1 191,171 + HMPREF1058_RS07560 0.30 +1.3 191,171 + HMPREF1058_RS07560 0.30 +1.5 191,172 - HMPREF1058_RS07560 0.30 -1.1 191,254 + HMPREF1058_RS07560 0.37 -0.3 191,303 + HMPREF1058_RS07560 0.41 +1.5 191,303 + HMPREF1058_RS07560 0.41 -2.4 191,303 + HMPREF1058_RS07560 0.41 -0.4 191,304 - HMPREF1058_RS07560 0.41 +2.6 191,304 - HMPREF1058_RS07560 0.41 -3.0 191,304 - HMPREF1058_RS07560 0.41 +0.2 191,304 - HMPREF1058_RS07560 0.41 -2.1 191,305 + HMPREF1058_RS07560 0.41 -0.2 191,305 + HMPREF1058_RS07560 0.41 +3.3 191,305 + HMPREF1058_RS07560 0.41 -1.2 191,305 + HMPREF1058_RS07560 0.41 -1.1 191,306 - HMPREF1058_RS07560 0.41 +0.2 191,306 - HMPREF1058_RS07560 0.41 -1.5 191,306 - HMPREF1058_RS07560 0.41 +0.3 191,306 - HMPREF1058_RS07560 0.41 -1.1 191,312 + HMPREF1058_RS07560 0.42 -1.6 191,313 - HMPREF1058_RS07560 0.42 +0.3 191,411 - HMPREF1058_RS07560 0.51 -3.3 191,440 + HMPREF1058_RS07560 0.53 -0.1 191,441 - HMPREF1058_RS07560 0.53 -2.0 191,441 - HMPREF1058_RS07560 0.53 +1.9 191,530 + HMPREF1058_RS07560 0.61 +0.2 191,537 + HMPREF1058_RS07560 0.61 -0.4 191,537 + HMPREF1058_RS07560 0.61 -2.1 191,592 - HMPREF1058_RS07560 0.66 +0.5 191,638 - HMPREF1058_RS07560 0.70 -0.4 191,658 - HMPREF1058_RS07560 0.72 -1.0 191,725 - HMPREF1058_RS07560 0.77 -0.4 191,791 - HMPREF1058_RS07560 0.83 -0.3 191,794 - HMPREF1058_RS07560 0.83 +0.1 191,846 + HMPREF1058_RS07560 0.88 +0.9 191,907 - +1.0 191,937 + -1.5 191,979 + +0.8 191,998 - -1.3 192,068 + -1.1 192,068 + -1.0 192,134 - HMPREF1058_RS07555 0.16 -1.7 192,215 - HMPREF1058_RS07555 0.25 +0.6 192,272 + HMPREF1058_RS07555 0.32 +2.3 192,412 - HMPREF1058_RS07555 0.48 -1.0 192,441 + HMPREF1058_RS07555 0.51 +3.3 192,511 + HMPREF1058_RS07555 0.59 +1.9 192,525 - HMPREF1058_RS07555 0.61 +1.9 192,564 - HMPREF1058_RS07555 0.66 +0.7 192,634 - HMPREF1058_RS07555 0.74 -2.5 192,666 + HMPREF1058_RS07555 0.77 -0.8 192,709 - HMPREF1058_RS07555 0.82 -1.5 192,709 - HMPREF1058_RS07555 0.82 -0.7 192,748 + HMPREF1058_RS07555 0.87 -0.4 192,781 + -0.3 192,868 - -1.3 192,952 - -1.7 192,985 - +0.3
Or see this region's nucleotide sequence