Experiment: polygalacturonic 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02365 and HMPREF1058_RS02360 are separated by 186 nucleotides HMPREF1058_RS02360 and HMPREF1058_RS02355 are separated by 12 nucleotides
HMPREF1058_RS02365: HMPREF1058_RS02365 - DUF4981 domain-containing protein, at 211,399 to 214,629
_RS02365
HMPREF1058_RS02360: HMPREF1058_RS02360 - RagB/SusD family nutrient uptake outer membrane protein, at 214,816 to 216,633
_RS02360
HMPREF1058_RS02355: HMPREF1058_RS02355 - TonB-dependent receptor, at 216,646 to 219,738
_RS02355
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 213.831 kb on - strand, within HMPREF1058_RS02365 at 213.842 kb on + strand, within HMPREF1058_RS02365 at 213.880 kb on - strand, within HMPREF1058_RS02365 at 213.979 kb on + strand, within HMPREF1058_RS02365 at 213.997 kb on + strand, within HMPREF1058_RS02365 at 214.095 kb on + strand, within HMPREF1058_RS02365 at 214.126 kb on - strand, within HMPREF1058_RS02365 at 214.128 kb on + strand, within HMPREF1058_RS02365 at 214.129 kb on - strand, within HMPREF1058_RS02365 at 214.132 kb on - strand, within HMPREF1058_RS02365 at 214.189 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.191 kb on + strand, within HMPREF1058_RS02365 at 214.193 kb on + strand, within HMPREF1058_RS02365 at 214.213 kb on + strand, within HMPREF1058_RS02365 at 214.214 kb on - strand, within HMPREF1058_RS02365 at 214.217 kb on + strand, within HMPREF1058_RS02365 at 214.218 kb on - strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.225 kb on + strand, within HMPREF1058_RS02365 at 214.226 kb on - strand, within HMPREF1058_RS02365 at 214.250 kb on - strand, within HMPREF1058_RS02365 at 214.284 kb on + strand, within HMPREF1058_RS02365 at 214.355 kb on - strand at 214.394 kb on + strand at 214.551 kb on + strand at 214.552 kb on - strand at 214.612 kb on + strand at 214.624 kb on - strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.632 kb on + strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.633 kb on - strand at 214.672 kb on + strand at 214.700 kb on + strand at 214.801 kb on + strand at 214.861 kb on + strand at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.009 kb on + strand, within HMPREF1058_RS02360 at 215.187 kb on + strand, within HMPREF1058_RS02360 at 215.233 kb on + strand, within HMPREF1058_RS02360 at 215.353 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.373 kb on - strand, within HMPREF1058_RS02360 at 215.382 kb on + strand, within HMPREF1058_RS02360 at 215.505 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.508 kb on - strand, within HMPREF1058_RS02360 at 215.555 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.568 kb on - strand, within HMPREF1058_RS02360 at 215.585 kb on + strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.586 kb on - strand, within HMPREF1058_RS02360 at 215.592 kb on + strand, within HMPREF1058_RS02360 at 215.639 kb on + strand, within HMPREF1058_RS02360 at 215.663 kb on + strand, within HMPREF1058_RS02360 at 215.687 kb on + strand, within HMPREF1058_RS02360 at 215.721 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.737 kb on - strand, within HMPREF1058_RS02360 at 215.738 kb on + strand, within HMPREF1058_RS02360 at 215.818 kb on + strand, within HMPREF1058_RS02360 at 215.819 kb on - strand, within HMPREF1058_RS02360 at 215.867 kb on + strand, within HMPREF1058_RS02360 at 215.950 kb on - strand, within HMPREF1058_RS02360 at 215.952 kb on - strand, within HMPREF1058_RS02360 at 215.984 kb on - strand, within HMPREF1058_RS02360 at 216.034 kb on - strand, within HMPREF1058_RS02360 at 216.078 kb on + strand, within HMPREF1058_RS02360 at 216.146 kb on + strand, within HMPREF1058_RS02360 at 216.147 kb on - strand, within HMPREF1058_RS02360 at 216.174 kb on + strand, within HMPREF1058_RS02360 at 216.175 kb on - strand, within HMPREF1058_RS02360 at 216.176 kb on + strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.177 kb on - strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.178 kb on + strand, within HMPREF1058_RS02360 at 216.276 kb on - strand, within HMPREF1058_RS02360 at 216.277 kb on - strand, within HMPREF1058_RS02360 at 216.290 kb on - strand, within HMPREF1058_RS02360 at 216.291 kb on + strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.434 kb on - strand, within HMPREF1058_RS02360 at 216.437 kb on + strand, within HMPREF1058_RS02360 at 216.438 kb on - strand, within HMPREF1058_RS02360 at 216.464 kb on - strand at 216.609 kb on + strand at 216.610 kb on - strand at 216.671 kb on - strand at 216.674 kb on + strand at 216.674 kb on + strand at 216.675 kb on - strand at 216.675 kb on - strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.803 kb on - strand at 216.878 kb on + strand at 216.879 kb on - strand at 216.916 kb on - strand at 216.916 kb on - strand at 216.918 kb on + strand at 216.981 kb on + strand, within HMPREF1058_RS02355 at 217.089 kb on + strand, within HMPREF1058_RS02355 at 217.090 kb on - strand, within HMPREF1058_RS02355 at 217.095 kb on + strand, within HMPREF1058_RS02355 at 217.167 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.278 kb on - strand, within HMPREF1058_RS02355 at 217.310 kb on + strand, within HMPREF1058_RS02355 at 217.311 kb on - strand, within HMPREF1058_RS02355 at 217.425 kb on + strand, within HMPREF1058_RS02355 at 217.537 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355 at 217.621 kb on - strand, within HMPREF1058_RS02355
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C) remove 213,831 - HMPREF1058_RS02365 0.75 +0.9 213,842 + HMPREF1058_RS02365 0.76 -0.0 213,880 - HMPREF1058_RS02365 0.77 +3.1 213,979 + HMPREF1058_RS02365 0.80 -1.6 213,997 + HMPREF1058_RS02365 0.80 -0.9 214,095 + HMPREF1058_RS02365 0.83 +1.2 214,126 - HMPREF1058_RS02365 0.84 -1.7 214,128 + HMPREF1058_RS02365 0.84 -1.5 214,129 - HMPREF1058_RS02365 0.84 +0.5 214,132 - HMPREF1058_RS02365 0.85 -2.0 214,189 + HMPREF1058_RS02365 0.86 -1.3 214,191 + HMPREF1058_RS02365 0.86 -1.3 214,191 + HMPREF1058_RS02365 0.86 +0.9 214,193 + HMPREF1058_RS02365 0.86 -0.3 214,213 + HMPREF1058_RS02365 0.87 +4.7 214,214 - HMPREF1058_RS02365 0.87 +0.7 214,217 + HMPREF1058_RS02365 0.87 +0.5 214,218 - HMPREF1058_RS02365 0.87 +0.1 214,225 + HMPREF1058_RS02365 0.87 +0.3 214,225 + HMPREF1058_RS02365 0.87 -0.3 214,226 - HMPREF1058_RS02365 0.87 -0.1 214,250 - HMPREF1058_RS02365 0.88 +1.4 214,284 + HMPREF1058_RS02365 0.89 +0.7 214,355 - -0.2 214,394 + -0.3 214,551 + +0.7 214,552 - -1.6 214,612 + -0.6 214,624 - +0.7 214,632 + -1.2 214,632 + -0.8 214,632 + -1.1 214,633 - -1.4 214,633 - +1.1 214,633 - +0.9 214,633 - +0.5 214,672 + +1.1 214,700 + +0.7 214,801 + -1.6 214,861 + -1.1 215,009 + HMPREF1058_RS02360 0.11 -1.3 215,009 + HMPREF1058_RS02360 0.11 +0.7 215,187 + HMPREF1058_RS02360 0.20 -1.5 215,233 + HMPREF1058_RS02360 0.23 +0.7 215,353 - HMPREF1058_RS02360 0.30 +0.3 215,373 - HMPREF1058_RS02360 0.31 +0.6 215,373 - HMPREF1058_RS02360 0.31 -0.7 215,382 + HMPREF1058_RS02360 0.31 +0.1 215,505 - HMPREF1058_RS02360 0.38 -1.1 215,508 - HMPREF1058_RS02360 0.38 -0.3 215,508 - HMPREF1058_RS02360 0.38 +1.4 215,508 - HMPREF1058_RS02360 0.38 -0.8 215,555 - HMPREF1058_RS02360 0.41 +0.0 215,568 - HMPREF1058_RS02360 0.41 -0.4 215,568 - HMPREF1058_RS02360 0.41 +0.9 215,585 + HMPREF1058_RS02360 0.42 +0.2 215,586 - HMPREF1058_RS02360 0.42 -0.1 215,586 - HMPREF1058_RS02360 0.42 +2.4 215,592 + HMPREF1058_RS02360 0.43 -0.8 215,639 + HMPREF1058_RS02360 0.45 -0.1 215,663 + HMPREF1058_RS02360 0.47 +0.5 215,687 + HMPREF1058_RS02360 0.48 +3.3 215,721 - HMPREF1058_RS02360 0.50 +1.5 215,737 - HMPREF1058_RS02360 0.51 -2.1 215,737 - HMPREF1058_RS02360 0.51 +0.5 215,738 + HMPREF1058_RS02360 0.51 -1.6 215,818 + HMPREF1058_RS02360 0.55 -2.1 215,819 - HMPREF1058_RS02360 0.55 +3.3 215,867 + HMPREF1058_RS02360 0.58 -1.6 215,950 - HMPREF1058_RS02360 0.62 +1.4 215,952 - HMPREF1058_RS02360 0.62 -0.6 215,984 - HMPREF1058_RS02360 0.64 -0.7 216,034 - HMPREF1058_RS02360 0.67 -1.6 216,078 + HMPREF1058_RS02360 0.69 -2.0 216,146 + HMPREF1058_RS02360 0.73 +0.7 216,147 - HMPREF1058_RS02360 0.73 +1.9 216,174 + HMPREF1058_RS02360 0.75 -1.4 216,175 - HMPREF1058_RS02360 0.75 +0.1 216,176 + HMPREF1058_RS02360 0.75 +1.1 216,177 - HMPREF1058_RS02360 0.75 -1.1 216,177 - HMPREF1058_RS02360 0.75 +0.4 216,178 + HMPREF1058_RS02360 0.75 -0.3 216,178 + HMPREF1058_RS02360 0.75 -0.6 216,276 - HMPREF1058_RS02360 0.80 +0.4 216,277 - HMPREF1058_RS02360 0.80 -1.2 216,290 - HMPREF1058_RS02360 0.81 -1.9 216,291 + HMPREF1058_RS02360 0.81 +1.4 216,434 - HMPREF1058_RS02360 0.89 +1.2 216,434 - HMPREF1058_RS02360 0.89 +1.5 216,437 + HMPREF1058_RS02360 0.89 -1.0 216,438 - HMPREF1058_RS02360 0.89 +1.4 216,464 - -1.7 216,609 + -1.1 216,610 - +1.5 216,671 - +1.7 216,674 + +1.7 216,674 + -0.9 216,675 - +1.8 216,675 - -0.2 216,737 + -2.1 216,738 - -0.1 216,780 - -0.3 216,780 - -0.1 216,803 - -2.5 216,878 + -0.8 216,879 - -0.7 216,916 - -0.3 216,916 - -1.2 216,918 + +0.8 216,981 + HMPREF1058_RS02355 0.11 +1.0 217,089 + HMPREF1058_RS02355 0.14 -0.7 217,090 - HMPREF1058_RS02355 0.14 -1.1 217,095 + HMPREF1058_RS02355 0.15 +1.8 217,167 - HMPREF1058_RS02355 0.17 -0.9 217,278 - HMPREF1058_RS02355 0.20 -0.7 217,278 - HMPREF1058_RS02355 0.20 -1.6 217,310 + HMPREF1058_RS02355 0.21 -0.8 217,311 - HMPREF1058_RS02355 0.22 -2.1 217,425 + HMPREF1058_RS02355 0.25 -0.5 217,537 - HMPREF1058_RS02355 0.29 -0.1 217,621 - HMPREF1058_RS02355 0.32 -2.9 217,621 - HMPREF1058_RS02355 0.32 +0.7
Or see this region's nucleotide sequence