Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16010

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,522,934	+		LRK54_RS16000	0.80	-1.0
3,522,934	+		LRK54_RS16000	0.80	+1.9
3,522,934	+		LRK54_RS16000	0.80	+0.6
3,522,934	+		LRK54_RS16000	0.80	+0.9
3,522,934	+		LRK54_RS16000	0.80	-0.8
3,522,934	+		LRK54_RS16000	0.80	-0.5
3,522,934	+		LRK54_RS16000	0.80	-1.9
3,522,934	+		LRK54_RS16000	0.80	-0.5
3,522,934	+		LRK54_RS16000	0.80	-1.2
3,522,934	+		LRK54_RS16000	0.80	+0.3
3,522,934	+		LRK54_RS16000	0.80	+0.2
3,522,934	+		LRK54_RS16000	0.80	+0.1
3,522,935	-		LRK54_RS16000	0.80	-0.1
3,522,935	-		LRK54_RS16000	0.80	-1.6
3,522,935	-		LRK54_RS16000	0.80	-1.1
3,522,935	-		LRK54_RS16000	0.80	+0.8
3,522,935	-		LRK54_RS16000	0.80	-0.6
3,522,935	-		LRK54_RS16000	0.80	+0.3
3,522,935	-		LRK54_RS16000	0.80	-0.2
3,522,935	-		LRK54_RS16000	0.80	-0.2
3,522,935	-		LRK54_RS16000	0.80	+0.1
3,522,935	-		LRK54_RS16000	0.80	+0.9
3,522,935	-		LRK54_RS16000	0.80	-0.0
3,522,935	-		LRK54_RS16000	0.80	-2.6
3,522,935	-		LRK54_RS16000	0.80	-1.6
3,523,072	+		LRK54_RS16000	0.87	+0.7
3,523,072	+		LRK54_RS16000	0.87	-0.9
3,523,072	+		LRK54_RS16000	0.87	+0.3
3,523,073	-		LRK54_RS16000	0.87	-1.5
3,523,073	-		LRK54_RS16000	0.87	+0.3
3,523,073	-		LRK54_RS16000	0.87	-0.5
3,523,105	+		LRK54_RS16000	0.88	+0.3
3,523,105	+		LRK54_RS16000	0.88	-2.1
3,523,105	+		LRK54_RS16000	0.88	+1.0
3,523,105	+		LRK54_RS16000	0.88	-0.2
3,523,105	+		LRK54_RS16000	0.88	-0.9
3,523,105	+		LRK54_RS16000	0.88	-0.8
3,523,105	+		LRK54_RS16000	0.88	+0.3
3,523,105	+		LRK54_RS16000	0.88	-0.7
3,523,105	+		LRK54_RS16000	0.88	-0.2
3,523,106	-		LRK54_RS16000	0.88	-0.8
3,523,106	-		LRK54_RS16000	0.88	-2.5
3,523,106	-		LRK54_RS16000	0.88	-1.7
3,523,106	-		LRK54_RS16000	0.88	-0.4
3,523,106	-		LRK54_RS16000	0.88	-0.4
3,523,106	-		LRK54_RS16000	0.88	+0.4
3,523,106	-		LRK54_RS16000	0.88	+0.5
3,523,106	-		LRK54_RS16000	0.88	+0.0
3,523,216	+				+0.1
3,523,216	+				+0.9
3,523,216	+				+1.4
3,523,216	+				+0.3
3,523,216	+				-0.6
3,523,216	+				+0.4
3,523,216	+				-0.5
3,523,216	+				+1.3
3,523,216	+				-0.1
3,523,216	+				-0.7
3,523,217	-				-0.1
3,523,217	-				+1.4
3,523,217	-				-0.6
3,523,217	-				+0.5
3,523,217	-				-1.5
3,523,217	-				+0.1
3,523,217	-				+1.0
3,523,217	-				+1.2
3,523,217	-				+0.3
3,523,217	-				-0.3
3,523,217	-				+1.5
3,523,217	-				+1.9
3,523,217	-				+0.0
3,523,217	-				-2.3
3,523,264	+				-0.3
3,523,265	-				+0.3
3,523,265	-				+1.3
3,523,265	-				-0.5
3,523,433	+				-2.4
3,523,433	+				+0.5
3,523,433	+				-2.0
3,523,433	+				-0.1
3,523,433	+				-0.3
3,523,433	+				+0.9
3,523,433	+				+1.0
3,523,433	+				+0.1
3,523,433	+				+2.9
3,523,434	-				+1.0
3,523,434	-				+0.3
3,523,434	-				+0.0
3,523,434	-				+1.0
3,523,434	-				+0.2
3,523,665	+				-0.5
3,523,665	+				-0.5
3,523,665	+				-0.2
3,523,665	+				-0.4
3,523,665	+				-0.1
3,523,665	+				-0.1
3,523,665	+				+1.5
3,523,665	+				-0.4
3,523,665	+				-1.1
3,523,665	+				+0.4
3,523,665	+				+1.3
3,523,665	+				-0.8
3,523,665	+				+0.0
3,523,666	-				+0.0
3,523,666	-				-0.8
3,523,666	-				+0.3
3,523,666	-				-2.1
3,523,666	-				-0.3
3,523,787	+				+0.0
3,523,863	-				-2.4
3,523,888	+				-0.4
3,523,888	+				-2.2
3,523,888	+				-1.2
3,523,888	+				-1.7
3,523,889	-				+0.7
3,523,889	-				-0.5
3,523,889	-				+0.6
3,523,889	-				+1.2
3,523,889	-				-1.7
3,523,889	-				-1.0
3,523,889	-				+1.3
3,523,923	+				-0.8
3,523,923	+				+0.1
3,523,923	+				+0.3
3,523,923	+				+0.4
3,523,924	-				-0.5
3,523,924	-				-0.2
3,523,924	-				-1.4
3,523,924	-				-0.1
3,523,924	-				+0.1
3,524,019	+				+0.7
3,524,019	+				-2.7
3,524,019	+				+0.4
3,524,019	+				+0.0
3,524,019	+				-1.4
3,524,019	+				-1.1
3,524,019	+				-1.2
3,524,019	+				-0.5
3,524,019	+				+0.6
3,524,019	+				-0.6
3,524,019	+				+0.0
3,524,019	+				-0.3
3,524,019	+				+0.1
3,524,019	+				+1.9
3,524,019	+				-0.1
3,524,019	+				+0.4
3,524,019	+				-0.1
3,524,019	+				-0.4
3,524,019	+				-0.7
3,524,019	+				-0.3
3,524,019	+				-0.7
3,524,019	+				+0.3
3,524,019	+				+0.9
3,524,019	+				-0.7
3,524,019	+				+0.9
3,524,019	+				-1.7
3,524,019	+				-0.8
3,524,019	+				+0.3
3,524,019	+				+0.6
3,524,020	-				+0.1
3,524,020	-				-1.2
3,524,020	-				+0.3
3,524,020	-				+0.2
3,524,020	-				-0.7
3,524,020	-				-1.1
3,524,020	-				+1.9
3,524,020	-				+0.3
3,524,020	-				+0.4
3,524,020	-				-0.5
3,524,020	-				-0.1
3,524,020	-				+0.5
3,524,020	-				-0.9
3,524,020	-				+0.3
3,524,020	-				-1.6
3,524,020	-				-0.3
3,524,020	-				-0.5
3,524,020	-				-0.2
3,524,020	-				-0.5
3,524,020	-				+1.9
3,524,020	-				+0.9
3,524,020	-				+0.8
3,524,020	-				+1.0
3,524,020	-				+0.4
3,524,020	-				-0.8
3,524,020	-				-0.6
3,524,020	-				+0.4
3,524,020	-				-0.6
3,524,020	-				+1.1
3,524,020	-				+0.5
3,524,556	+		LRK54_RS16010	0.56	-1.7
3,524,556	+		LRK54_RS16010	0.56	-1.0
3,524,556	+		LRK54_RS16010	0.56	-2.2
3,524,556	+		LRK54_RS16010	0.56	-0.5
3,524,556	+		LRK54_RS16010	0.56	-0.7
3,524,556	+		LRK54_RS16010	0.56	-0.6
3,524,557	-		LRK54_RS16010	0.56	-0.8
3,524,557	-		LRK54_RS16010	0.56	-1.7
3,524,557	-		LRK54_RS16010	0.56	+0.2
3,524,578	-		LRK54_RS16010	0.58	-0.1
3,524,676	+		LRK54_RS16010	0.67	+0.9
3,524,677	-		LRK54_RS16010	0.67	-0.6
3,524,677	-		LRK54_RS16010	0.67	-0.4
3,524,916	+		LRK54_RS16010	0.88	+0.5
3,524,917	-		LRK54_RS16010	0.88	-1.5
3,524,917	-		LRK54_RS16010	0.88	+0.7
3,524,917	-		LRK54_RS16010	0.88	-1.3
3,524,917	-		LRK54_RS16010	0.88	-1.7
3,524,917	-		LRK54_RS16010	0.88	+0.6
3,525,050	+				+1.4
3,525,050	+				-0.8
3,525,050	+				-0.4
3,525,051	-				+0.5
3,525,051	-				+1.1
3,525,051	-				-0.1
3,525,100	+				+1.4
3,525,100	+				-0.7
3,525,100	+				+1.6
3,525,100	+				+0.9
3,525,100	+				+0.3
3,525,100	+				+0.3
3,525,100	+				+1.6
3,525,100	+				+2.5
3,525,100	+				+2.3
3,525,101	-				+2.6
3,525,101	-				+1.4
3,525,101	-				-0.3
3,525,101	-				+1.1
3,525,120	-				-1.8
3,525,228	+				-1.5
3,525,228	+				-3.1
3,525,228	+				-0.0
3,525,228	+				-0.7
3,525,228	+				-4.0
3,525,228	+				-2.5
3,525,228	+				-2.1
3,525,228	+				-2.5
3,525,228	+				-2.2
3,525,228	+				-1.6
3,525,228	+				-1.8
3,525,228	+				-1.6
3,525,228	+				-2.2
3,525,228	+				-3.8
3,525,228	+				-3.8
3,525,228	+				-2.1
3,525,228	+				-0.7
3,525,228	+				-1.0
3,525,228	+				-1.5
3,525,229	-				-2.0
3,525,229	-				-2.0
3,525,229	-				-1.5
3,525,229	-				-0.1
3,525,229	-				-1.0
3,525,229	-				-2.3
3,525,229	-				-2.1
3,525,229	-				-0.6
3,525,229	-				-1.5
3,525,229	-				-2.2
3,525,229	-				-3.1
3,525,229	-				-0.5
3,525,831	+		LRK54_RS16015	0.35	-2.1
3,525,831	+		LRK54_RS16015	0.35	-3.5
3,525,832	-		LRK54_RS16015	0.35	-0.1
3,525,832	-		LRK54_RS16015	0.35	-1.8