Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06845

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,473,083	+		LRK54_RS06840	0.82	+0.1
1,473,083	+		LRK54_RS06840	0.82	+0.1
1,473,083	+		LRK54_RS06840	0.82	+0.6
1,473,083	+		LRK54_RS06840	0.82	-0.7
1,473,083	+		LRK54_RS06840	0.82	+0.5
1,473,083	+		LRK54_RS06840	0.82	-0.9
1,473,083	+		LRK54_RS06840	0.82	+0.8
1,473,083	+		LRK54_RS06840	0.82	-0.1
1,473,083	+		LRK54_RS06840	0.82	+1.2
1,473,083	+		LRK54_RS06840	0.82	-1.3
1,473,083	+		LRK54_RS06840	0.82	+1.6
1,473,083	+		LRK54_RS06840	0.82	+0.6
1,473,083	+		LRK54_RS06840	0.82	+1.9
1,473,083	+		LRK54_RS06840	0.82	-0.1
1,473,083	+		LRK54_RS06840	0.82	+0.7
1,473,083	+		LRK54_RS06840	0.82	-0.7
1,473,083	+		LRK54_RS06840	0.82	-2.8
1,473,083	+		LRK54_RS06840	0.82	+1.2
1,473,083	+		LRK54_RS06840	0.82	+1.9
1,473,083	+		LRK54_RS06840	0.82	-0.9
1,473,083	+		LRK54_RS06840	0.82	+0.1
1,473,083	+		LRK54_RS06840	0.82	+1.9
1,473,083	+		LRK54_RS06840	0.82	-0.5
1,473,083	+		LRK54_RS06840	0.82	+0.8
1,473,083	+		LRK54_RS06840	0.82	-1.9
1,473,083	+		LRK54_RS06840	0.82	-0.1
1,473,083	+		LRK54_RS06840	0.82	+0.2
1,473,084	-		LRK54_RS06840	0.82	-2.3
1,473,084	-		LRK54_RS06840	0.82	-1.0
1,473,084	-		LRK54_RS06840	0.82	+1.9
1,473,084	-		LRK54_RS06840	0.82	-0.5
1,473,084	-		LRK54_RS06840	0.82	-0.3
1,473,084	-		LRK54_RS06840	0.82	-1.1
1,473,084	-		LRK54_RS06840	0.82	-0.0
1,473,084	-		LRK54_RS06840	0.82	-0.4
1,473,084	-		LRK54_RS06840	0.82	-0.5
1,473,084	-		LRK54_RS06840	0.82	-1.0
1,473,084	-		LRK54_RS06840	0.82	-0.0
1,473,084	-		LRK54_RS06840	0.82	-0.4
1,473,084	-		LRK54_RS06840	0.82	+0.1
1,473,084	-		LRK54_RS06840	0.82	+0.1
1,473,084	-		LRK54_RS06840	0.82	-0.9
1,473,146	+		LRK54_RS06840	0.85	-1.6
1,473,146	+		LRK54_RS06840	0.85	-0.4
1,473,146	+		LRK54_RS06840	0.85	+0.9
1,473,146	+		LRK54_RS06840	0.85	+0.1
1,473,146	+		LRK54_RS06840	0.85	+0.2
1,473,146	+		LRK54_RS06840	0.85	-0.2
1,473,146	+		LRK54_RS06840	0.85	+0.7
1,473,146	+		LRK54_RS06840	0.85	+0.0
1,473,146	+		LRK54_RS06840	0.85	-2.2
1,473,146	+		LRK54_RS06840	0.85	-1.1
1,473,146	+		LRK54_RS06840	0.85	+0.1
1,473,146	+		LRK54_RS06840	0.85	-0.3
1,473,146	+		LRK54_RS06840	0.85	+2.1
1,473,146	+		LRK54_RS06840	0.85	+0.2
1,473,146	+		LRK54_RS06840	0.85	+0.6
1,473,146	+		LRK54_RS06840	0.85	+0.1
1,473,146	+		LRK54_RS06840	0.85	-1.5
1,473,147	-		LRK54_RS06840	0.85	-0.9
1,473,147	-		LRK54_RS06840	0.85	-0.7
1,473,147	-		LRK54_RS06840	0.85	-1.1
1,473,147	-		LRK54_RS06840	0.85	+2.9
1,473,147	-		LRK54_RS06840	0.85	-0.1
1,473,147	-		LRK54_RS06840	0.85	+1.6
1,473,147	-		LRK54_RS06840	0.85	+0.3
1,473,147	-		LRK54_RS06840	0.85	+0.1
1,473,147	-		LRK54_RS06840	0.85	+1.1
1,473,147	-		LRK54_RS06840	0.85	+1.1
1,473,147	-		LRK54_RS06840	0.85	-1.1
1,473,147	-		LRK54_RS06840	0.85	+0.3
1,473,147	-		LRK54_RS06840	0.85	+0.3
1,473,147	-		LRK54_RS06840	0.85	+2.5
1,473,147	-		LRK54_RS06840	0.85	+0.1
1,473,147	-		LRK54_RS06840	0.85	-1.2
1,473,147	-		LRK54_RS06840	0.85	-0.4
1,473,147	-		LRK54_RS06840	0.85	-1.5
1,473,147	-		LRK54_RS06840	0.85	+0.1
1,473,158	+		LRK54_RS06840	0.85	+2.5
1,473,158	+		LRK54_RS06840	0.85	-0.2
1,473,158	+		LRK54_RS06840	0.85	-1.2
1,473,158	+		LRK54_RS06840	0.85	+0.9
1,473,158	+		LRK54_RS06840	0.85	+2.3
1,473,158	+		LRK54_RS06840	0.85	+0.2
1,473,159	-		LRK54_RS06840	0.85	+0.2
1,473,159	-		LRK54_RS06840	0.85	-2.0
1,473,159	-		LRK54_RS06840	0.85	+0.6
1,473,159	-		LRK54_RS06840	0.85	-0.9
1,473,159	-		LRK54_RS06840	0.85	-0.3
1,473,159	-		LRK54_RS06840	0.85	-0.2
1,473,159	-		LRK54_RS06840	0.85	-0.7
1,473,159	-		LRK54_RS06840	0.85	-1.0
1,473,171	-		LRK54_RS06840	0.85	+0.0
1,473,227	+		LRK54_RS06840	0.87	-0.1
1,473,227	+		LRK54_RS06840	0.87	+1.3
1,473,227	+		LRK54_RS06840	0.87	-0.1
1,473,227	+		LRK54_RS06840	0.87	+1.4
1,473,227	+		LRK54_RS06840	0.87	-0.1
1,473,228	-		LRK54_RS06840	0.87	+0.5
1,473,228	-		LRK54_RS06840	0.87	+0.7
1,473,228	-		LRK54_RS06840	0.87	-0.4
1,473,228	-		LRK54_RS06840	0.87	-0.3
1,473,257	+		LRK54_RS06840	0.89	-0.2
1,473,257	+		LRK54_RS06840	0.89	-0.6
1,473,257	+		LRK54_RS06840	0.89	+1.5
1,473,257	+		LRK54_RS06840	0.89	+0.5
1,473,258	-		LRK54_RS06840	0.89	+0.5
1,473,258	-		LRK54_RS06840	0.89	+0.0
1,473,258	-		LRK54_RS06840	0.89	+0.2
1,473,258	-		LRK54_RS06840	0.89	-1.9
1,473,258	-		LRK54_RS06840	0.89	+1.0
1,473,597	+				-1.9
1,473,597	+				+0.4
1,473,597	+				-2.2
1,473,597	+				+1.4
1,473,597	+				-1.9
1,473,597	+				+0.6
1,473,597	+				+0.3
1,473,597	+				+0.1
1,473,597	+				+0.7
1,473,597	+				+0.9
1,473,598	-				-2.1
1,473,598	-				-1.5
1,473,598	-				-1.3
1,473,598	-				-0.4
1,473,598	-				+0.1
1,473,598	-				-0.1
1,473,598	-				-0.5
1,473,598	-				-0.0
1,473,598	-				+1.2
1,473,598	-				-0.3
1,473,598	-				-0.0
1,473,598	-				+0.5
1,473,644	+				+0.3
1,473,691	+				+1.3
1,473,691	+				+1.9
1,473,691	+				+0.7
1,473,691	+				+2.6
1,473,691	+				+2.1
1,473,692	-				+0.0
1,473,692	-				+1.4
1,473,692	-				+0.1
1,473,692	-				+0.4
1,473,692	-				+0.9
1,473,692	-				-2.4
1,473,846	+				-0.1
1,473,846	+				+0.6
1,473,846	+				+0.5
1,473,846	+				+0.8
1,473,846	+				-0.5
1,473,846	+				+1.9
1,473,846	+				-0.3
1,473,846	+				+0.5
1,473,846	+				-0.6
1,473,846	+				-0.3
1,473,846	+				+0.5
1,473,846	+				+1.7
1,473,846	+				-0.0
1,473,846	+				+0.8
1,473,846	+				+0.1
1,473,846	+				+1.2
1,473,846	+				+0.1
1,473,846	+				-0.1
1,473,846	+				+0.6
1,473,846	+				+1.0
1,473,846	+				+1.3
1,473,846	+				+1.0
1,473,846	+				+1.0
1,473,846	+				+1.1
1,473,846	+				+1.4
1,473,846	+				+2.2
1,473,846	+				+0.9
1,473,846	+				+1.8
1,473,846	+				+0.9
1,473,846	+				+1.0
1,473,846	+				+0.3
1,473,846	+				-1.4
1,473,846	+				+1.1
1,473,846	+				+0.7
1,473,846	+				+0.2
1,473,846	+				+0.8
1,473,846	+				-0.9
1,473,846	+				+1.1
1,473,846	+				+1.5
1,473,846	+				-1.1
1,473,847	-				+0.9
1,473,847	-				+0.1
1,473,847	-				+0.4
1,473,847	-				-0.5
1,473,847	-				+1.9
1,473,847	-				-0.8
1,473,847	-				+0.7
1,473,847	-				+0.1
1,473,847	-				+0.2
1,473,847	-				-1.5
1,473,847	-				-0.2
1,473,847	-				+0.5
1,473,847	-				-1.4
1,473,847	-				+0.9
1,473,847	-				+0.4
1,473,847	-				-0.7
1,473,847	-				+0.1
1,473,847	-				-0.2
1,473,847	-				+0.5
1,473,847	-				-0.4
1,473,847	-				-0.6
1,473,847	-				+0.6
1,473,847	-				-1.0
1,473,847	-				+0.0
1,473,847	-				-0.2
1,473,847	-				+0.1
1,473,847	-				+3.2
1,473,847	-				-0.1
1,473,847	-				+0.3
1,473,847	-				-1.0
1,473,847	-				-0.0
1,473,847	-				+2.2
1,473,847	-				+1.9
1,473,847	-				-0.0
1,473,847	-				+0.1
1,473,847	-				-0.5
1,473,847	-				+0.4
1,473,847	-				+1.7
1,473,847	-				-0.1
1,473,847	-				+0.9
1,473,874	+				+1.2
1,473,874	+				+1.4
1,473,874	+				+1.0
1,473,874	+				+1.2
1,473,874	+				+2.5
1,473,874	+				+0.2
1,473,874	+				+0.8
1,473,874	+				-0.5
1,473,875	-				+1.0
1,473,875	-				+0.3
1,473,875	-				+0.9
1,473,875	-				-2.4
1,473,875	-				+0.3
1,473,875	-				-1.7
1,473,875	-				+1.9
1,473,875	-				+1.2
1,473,875	-				-0.7
1,473,875	-				-0.3
1,473,875	-				-0.2
1,473,875	-				+2.1
1,473,875	-				-0.7
1,473,980	+		LRK54_RS06845	0.34	-1.1
1,473,980	+		LRK54_RS06845	0.34	+0.3
1,473,980	+		LRK54_RS06845	0.34	+0.8
1,473,980	+		LRK54_RS06845	0.34	+1.4
1,473,980	+		LRK54_RS06845	0.34	+0.8
1,473,980	+		LRK54_RS06845	0.34	-0.0
1,473,981	-		LRK54_RS06845	0.35	+1.3
1,473,981	-		LRK54_RS06845	0.35	-1.0
1,473,981	-		LRK54_RS06845	0.35	-0.3
1,473,981	-		LRK54_RS06845	0.35	-0.2
1,473,981	-		LRK54_RS06845	0.35	-0.3
1,473,981	-		LRK54_RS06845	0.35	+1.2
1,473,981	-		LRK54_RS06845	0.35	-0.1
1,473,981	-		LRK54_RS06845	0.35	+0.3
1,473,981	-		LRK54_RS06845	0.35	+0.0
1,473,981	-		LRK54_RS06845	0.35	-0.7
1,473,981	-		LRK54_RS06845	0.35	+1.5
1,473,981	-		LRK54_RS06845	0.35	+0.2
1,473,988	+		LRK54_RS06845	0.38	+1.4
1,474,047	+		LRK54_RS06845	0.65	-0.7
1,474,047	+		LRK54_RS06845	0.65	+0.3
1,474,183	+				+0.2
1,474,183	+				-0.0
1,474,183	+				-0.7
1,474,183	+				+0.9
1,474,183	+				+0.9
1,474,183	+				-1.5
1,474,183	+				-0.4
1,474,183	+				-0.1
1,474,183	+				-0.2
1,474,183	+				-0.5
1,474,183	+				+0.3
1,474,183	+				+0.1
1,474,183	+				+0.1
1,474,183	+				-2.3
1,474,183	+				+1.9
1,474,183	+				+1.6
1,474,183	+				-1.3
1,474,183	+				-0.9
1,474,183	+				-0.1
1,474,184	-				+1.1
1,474,184	-				-2.6
1,474,184	-				+0.9
1,474,184	-				+0.7
1,474,184	-				+0.1
1,474,184	-				-0.7
1,474,184	-				-0.3
1,474,184	-				+0.5
1,474,184	-				+0.8
1,474,184	-				+0.7
1,474,184	-				-0.6
1,474,184	-				+0.0
1,474,184	-				+0.6
1,474,184	-				+0.2
1,474,184	-				+0.3
1,474,184	-				+1.4
1,474,184	-				+0.8
1,474,208	+				-0.4
1,474,208	+				-0.4
1,474,208	+				-1.5
1,474,208	+				+1.2
1,474,208	+				-1.2
1,474,208	+				-1.4
1,474,208	+				-0.3
1,474,209	-				-1.8
1,474,209	-				-1.4
1,474,209	-				-1.3
1,474,209	-				-0.3
1,474,209	-				+0.8
1,474,268	+				-0.4
1,474,268	+				-0.8
1,474,268	+				-0.8
1,474,268	+				+2.3
1,474,268	+				-2.2
1,474,268	+				-0.4
1,474,268	+				-0.6
1,474,268	+				+0.0
1,474,268	+				-0.1
1,474,269	-				-0.9
1,474,269	-				-0.2
1,474,269	-				+2.2
1,474,269	-				+0.2
1,474,275	+				-3.0
1,474,275	+				+2.9
1,474,275	+				-1.2
1,474,275	+				-1.1
1,474,275	+				-0.7
1,474,275	+				-0.3
1,474,276	-				-0.8
1,474,276	-				-0.9
1,474,276	-				+0.5
1,474,276	-				-1.1
1,474,604	+		LRK54_RS06850	0.19	-1.0
1,474,604	+		LRK54_RS06850	0.19	-0.1
1,474,604	+		LRK54_RS06850	0.19	+0.9
1,474,604	+		LRK54_RS06850	0.19	-1.2
1,474,605	-		LRK54_RS06850	0.19	-1.6
1,474,605	-		LRK54_RS06850	0.19	-0.1
1,474,715	+		LRK54_RS06850	0.24	+0.3
1,474,715	+		LRK54_RS06850	0.24	-0.7
1,474,715	+		LRK54_RS06850	0.24	+1.5
1,474,715	+		LRK54_RS06850	0.24	-0.9
1,474,715	+		LRK54_RS06850	0.24	+0.4
1,474,715	+		LRK54_RS06850	0.24	-1.0
1,474,715	+		LRK54_RS06850	0.24	-1.2
1,474,715	+		LRK54_RS06850	0.24	-1.1
1,474,715	+		LRK54_RS06850	0.24	+0.3
1,474,715	+		LRK54_RS06850	0.24	-2.5
1,474,715	+		LRK54_RS06850	0.24	+0.9
1,474,715	+		LRK54_RS06850	0.24	+0.2
1,474,715	+		LRK54_RS06850	0.24	-1.6
1,474,715	+		LRK54_RS06850	0.24	-2.0
1,474,715	+		LRK54_RS06850	0.24	+0.8
1,474,715	+		LRK54_RS06850	0.24	-1.8
1,474,715	+		LRK54_RS06850	0.24	+1.9
1,474,715	+		LRK54_RS06850	0.24	-0.1
1,474,715	+		LRK54_RS06850	0.24	-1.2
1,474,715	+		LRK54_RS06850	0.24	-0.0
1,474,715	+		LRK54_RS06850	0.24	-0.6
1,474,716	-		LRK54_RS06850	0.24	-3.1
1,474,716	-		LRK54_RS06850	0.24	-1.0
1,474,716	-		LRK54_RS06850	0.24	-0.4
1,474,716	-		LRK54_RS06850	0.24	+0.4
1,474,716	-		LRK54_RS06850	0.24	+0.6
1,474,716	-		LRK54_RS06850	0.24	+0.8
1,474,716	-		LRK54_RS06850	0.24	-0.1
1,474,716	-		LRK54_RS06850	0.24	-0.3
1,474,716	-		LRK54_RS06850	0.24	+0.2
1,474,716	-		LRK54_RS06850	0.24	+1.9
1,474,716	-		LRK54_RS06850	0.24	+0.3
1,474,716	-		LRK54_RS06850	0.24	+0.1
1,474,716	-		LRK54_RS06850	0.24	+0.8
1,474,716	-		LRK54_RS06850	0.24	+0.5
1,474,716	-		LRK54_RS06850	0.24	-0.7
1,474,724	+		LRK54_RS06850	0.24	-1.5
1,474,724	+		LRK54_RS06850	0.24	+1.3
1,474,724	+		LRK54_RS06850	0.24	-1.1
1,474,724	+		LRK54_RS06850	0.24	-0.6
1,474,725	-		LRK54_RS06850	0.24	+0.3
1,474,725	-		LRK54_RS06850	0.24	-1.2
1,474,725	-		LRK54_RS06850	0.24	-1.8
1,474,725	-		LRK54_RS06850	0.24	-2.6
1,474,823	+		LRK54_RS06850	0.28	-0.9
1,474,823	+		LRK54_RS06850	0.28	-1.7
1,474,823	+		LRK54_RS06850	0.28	-1.9
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1,474,824	-		LRK54_RS06850	0.28	-0.7
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1,474,883	+		LRK54_RS06850	0.31	-0.2
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1,474,883	+		LRK54_RS06850	0.31	+0.3
1,474,883	+		LRK54_RS06850	0.31	+2.2
1,474,883	+		LRK54_RS06850	0.31	+0.3
1,474,883	+		LRK54_RS06850	0.31	-0.8
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1,475,059	+		LRK54_RS06850	0.39	-1.0
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