Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16130

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,551,385	+		LRK54_RS16125	0.63	-1.1
3,551,385	+		LRK54_RS16125	0.63	-1.7
3,551,385	+		LRK54_RS16125	0.63	+0.4
3,551,385	+		LRK54_RS16125	0.63	+0.8
3,551,385	+		LRK54_RS16125	0.63	-1.4
3,551,385	+		LRK54_RS16125	0.63	-0.6
3,551,385	+		LRK54_RS16125	0.63	+0.8
3,551,385	+		LRK54_RS16125	0.63	-0.1
3,551,385	+		LRK54_RS16125	0.63	-0.1
3,551,385	+		LRK54_RS16125	0.63	-2.1
3,551,385	+		LRK54_RS16125	0.63	+0.1
3,551,385	+		LRK54_RS16125	0.63	+0.2
3,551,385	+		LRK54_RS16125	0.63	-0.2
3,551,385	+		LRK54_RS16125	0.63	-0.6
3,551,385	+		LRK54_RS16125	0.63	-1.6
3,551,385	+		LRK54_RS16125	0.63	+2.0
3,551,385	+		LRK54_RS16125	0.63	-0.2
3,551,385	+		LRK54_RS16125	0.63	+0.8
3,551,385	+		LRK54_RS16125	0.63	-0.4
3,551,385	+		LRK54_RS16125	0.63	-0.3
3,551,385	+		LRK54_RS16125	0.63	-1.6
3,551,386	-		LRK54_RS16125	0.63	+0.4
3,551,386	-		LRK54_RS16125	0.63	-0.2
3,551,386	-		LRK54_RS16125	0.63	-0.5
3,551,386	-		LRK54_RS16125	0.63	+2.5
3,551,386	-		LRK54_RS16125	0.63	+1.4
3,551,386	-		LRK54_RS16125	0.63	+0.0
3,551,386	-		LRK54_RS16125	0.63	-0.2
3,551,386	-		LRK54_RS16125	0.63	+1.1
3,551,386	-		LRK54_RS16125	0.63	-0.2
3,551,386	-		LRK54_RS16125	0.63	+0.9
3,551,386	-		LRK54_RS16125	0.63	-0.9
3,551,386	-		LRK54_RS16125	0.63	-0.3
3,551,386	-		LRK54_RS16125	0.63	-1.4
3,551,386	-		LRK54_RS16125	0.63	-1.0
3,551,386	-		LRK54_RS16125	0.63	+0.1
3,551,386	-		LRK54_RS16125	0.63	+1.4
3,551,386	-		LRK54_RS16125	0.63	+1.8
3,551,386	-		LRK54_RS16125	0.63	-0.2
3,551,386	-		LRK54_RS16125	0.63	+0.4
3,551,386	-		LRK54_RS16125	0.63	-0.7
3,551,386	-		LRK54_RS16125	0.63	+0.4
3,551,386	-		LRK54_RS16125	0.63	+1.2
3,551,386	-		LRK54_RS16125	0.63	+0.4
3,551,386	-		LRK54_RS16125	0.63	-1.4
3,551,386	-		LRK54_RS16125	0.63	-0.2
3,551,403	+		LRK54_RS16125	0.64	+0.1
3,551,403	+		LRK54_RS16125	0.64	-1.2
3,551,403	+		LRK54_RS16125	0.64	+0.5
3,551,403	+		LRK54_RS16125	0.64	-1.5
3,551,403	+		LRK54_RS16125	0.64	-0.8
3,551,404	-		LRK54_RS16125	0.64	-0.2
3,551,404	-		LRK54_RS16125	0.64	+1.4
3,551,508	+		LRK54_RS16125	0.71	-0.6
3,551,508	+		LRK54_RS16125	0.71	-2.2
3,551,508	+		LRK54_RS16125	0.71	-1.4
3,551,508	+		LRK54_RS16125	0.71	-0.5
3,551,508	+		LRK54_RS16125	0.71	-0.2
3,551,508	+		LRK54_RS16125	0.71	-1.5
3,551,509	-		LRK54_RS16125	0.71	+0.2
3,551,509	-		LRK54_RS16125	0.71	+0.4
3,551,509	-		LRK54_RS16125	0.71	+0.2
3,551,541	+		LRK54_RS16125	0.73	-0.1
3,551,541	+		LRK54_RS16125	0.73	-0.2
3,551,541	+		LRK54_RS16125	0.73	-0.5
3,551,541	+		LRK54_RS16125	0.73	-1.9
3,551,541	+		LRK54_RS16125	0.73	+0.2
3,551,541	+		LRK54_RS16125	0.73	+0.0
3,551,541	+		LRK54_RS16125	0.73	-0.9
3,551,541	+		LRK54_RS16125	0.73	-1.3
3,551,541	+		LRK54_RS16125	0.73	-0.6
3,551,541	+		LRK54_RS16125	0.73	-0.8
3,551,541	+		LRK54_RS16125	0.73	+0.2
3,551,542	-		LRK54_RS16125	0.73	+0.9
3,551,542	-		LRK54_RS16125	0.73	+0.1
3,551,542	-		LRK54_RS16125	0.73	-0.6
3,551,542	-		LRK54_RS16125	0.73	-0.2
3,551,542	-		LRK54_RS16125	0.73	-3.4
3,551,542	-		LRK54_RS16125	0.73	+0.4
3,551,542	-		LRK54_RS16125	0.73	+0.2
3,551,542	-		LRK54_RS16125	0.73	-0.6
3,551,542	-		LRK54_RS16125	0.73	-0.8
3,551,542	-		LRK54_RS16125	0.73	-1.0
3,551,754	+		LRK54_RS16125	0.88	-1.0
3,551,754	+		LRK54_RS16125	0.88	+0.4
3,551,754	+		LRK54_RS16125	0.88	+0.6
3,551,754	+		LRK54_RS16125	0.88	-0.1
3,551,754	+		LRK54_RS16125	0.88	-1.6
3,551,754	+		LRK54_RS16125	0.88	+2.2
3,551,754	+		LRK54_RS16125	0.88	-1.2
3,551,754	+		LRK54_RS16125	0.88	+0.1
3,551,755	-		LRK54_RS16125	0.88	-0.5
3,551,755	-		LRK54_RS16125	0.88	-1.2
3,551,755	-		LRK54_RS16125	0.88	+1.8
3,552,159	+		LRK54_RS16130	0.40	-0.1
3,552,224	+		LRK54_RS16130	0.53	+0.9
3,552,224	+		LRK54_RS16130	0.53	+2.4
3,552,224	+		LRK54_RS16130	0.53	+1.8
3,552,224	+		LRK54_RS16130	0.53	+0.3
3,552,224	+		LRK54_RS16130	0.53	+0.1
3,552,224	+		LRK54_RS16130	0.53	-0.1
3,552,224	+		LRK54_RS16130	0.53	-0.4
3,552,224	+		LRK54_RS16130	0.53	-0.4
3,552,224	+		LRK54_RS16130	0.53	-0.1
3,552,224	+		LRK54_RS16130	0.53	+0.1
3,552,224	+		LRK54_RS16130	0.53	+1.2
3,552,224	+		LRK54_RS16130	0.53	-1.5
3,552,224	+		LRK54_RS16130	0.53	+1.6
3,552,224	+		LRK54_RS16130	0.53	-0.4
3,552,224	+		LRK54_RS16130	0.53	-1.1
3,552,224	+		LRK54_RS16130	0.53	-0.1
3,552,224	+		LRK54_RS16130	0.53	-1.3
3,552,225	-		LRK54_RS16130	0.53	-0.6
3,552,225	-		LRK54_RS16130	0.53	-0.4
3,552,225	-		LRK54_RS16130	0.53	+0.0
3,552,225	-		LRK54_RS16130	0.53	-1.7
3,552,225	-		LRK54_RS16130	0.53	+1.2
3,552,225	-		LRK54_RS16130	0.53	-0.5
3,552,225	-		LRK54_RS16130	0.53	-1.1
3,552,225	-		LRK54_RS16130	0.53	+1.4
3,552,225	-		LRK54_RS16130	0.53	-0.8
3,552,225	-		LRK54_RS16130	0.53	+0.8
3,552,225	-		LRK54_RS16130	0.53	+0.3
3,552,225	-		LRK54_RS16130	0.53	-1.1
3,552,225	-		LRK54_RS16130	0.53	+0.3
3,552,225	-		LRK54_RS16130	0.53	-1.0
3,552,225	-		LRK54_RS16130	0.53	+0.8
3,552,225	-		LRK54_RS16130	0.53	-0.2
3,552,225	-		LRK54_RS16130	0.53	-0.7
3,552,225	-		LRK54_RS16130	0.53	+0.6
3,552,225	-		LRK54_RS16130	0.53	-0.6
3,552,225	-		LRK54_RS16130	0.53	+0.6
3,552,225	-		LRK54_RS16130	0.53	+0.1
3,552,225	-		LRK54_RS16130	0.53	+0.4
3,552,269	+		LRK54_RS16130	0.61	+0.8
3,552,269	+		LRK54_RS16130	0.61	-0.4
3,552,269	+		LRK54_RS16130	0.61	-0.7
3,552,269	+		LRK54_RS16130	0.61	+0.9
3,552,269	+		LRK54_RS16130	0.61	+1.1
3,552,269	+		LRK54_RS16130	0.61	-0.5
3,552,269	+		LRK54_RS16130	0.61	+2.2
3,552,269	+		LRK54_RS16130	0.61	+0.2
3,552,269	+		LRK54_RS16130	0.61	-0.4
3,552,269	+		LRK54_RS16130	0.61	+0.1
3,552,269	+		LRK54_RS16130	0.61	+0.8
3,552,269	+		LRK54_RS16130	0.61	+0.5
3,552,270	-		LRK54_RS16130	0.62	-1.3
3,552,270	-		LRK54_RS16130	0.62	+0.0
3,552,270	-		LRK54_RS16130	0.62	+0.0
3,552,270	-		LRK54_RS16130	0.62	+0.3
3,552,270	-		LRK54_RS16130	0.62	+0.8
3,552,270	-		LRK54_RS16130	0.62	+0.1
3,552,270	-		LRK54_RS16130	0.62	+0.3
3,552,270	-		LRK54_RS16130	0.62	+0.2
3,552,270	-		LRK54_RS16130	0.62	+0.1
3,552,270	-		LRK54_RS16130	0.62	-0.4
3,552,270	-		LRK54_RS16130	0.62	-0.3
3,552,270	-		LRK54_RS16130	0.62	+0.6
3,552,270	-		LRK54_RS16130	0.62	-0.4
3,552,397	+		LRK54_RS16130	0.86	-1.4
3,552,397	+		LRK54_RS16130	0.86	+0.2
3,552,397	+		LRK54_RS16130	0.86	-0.8
3,552,397	+		LRK54_RS16130	0.86	+0.8
3,552,398	-		LRK54_RS16130	0.86	+0.6
3,552,398	-		LRK54_RS16130	0.86	+0.1
3,552,398	-		LRK54_RS16130	0.86	+0.0
3,552,398	-		LRK54_RS16130	0.86	+2.5
3,552,398	-		LRK54_RS16130	0.86	+1.5
3,552,398	-		LRK54_RS16130	0.86	+0.5
3,552,398	-		LRK54_RS16130	0.86	-0.3
3,552,398	-		LRK54_RS16130	0.86	+0.3
3,552,484	+				-1.7
3,552,484	+				-0.0
3,552,484	+				-1.2
3,552,485	-				+0.2
3,552,485	-				-0.2
3,552,485	-				-1.6
3,552,507	+				-1.6
3,552,508	-				-3.3
3,552,781	+		LRK54_RS16135	0.29	-0.9
3,552,781	+		LRK54_RS16135	0.29	+0.8
3,552,781	+		LRK54_RS16135	0.29	-0.5
3,552,781	+		LRK54_RS16135	0.29	+1.3
3,552,781	+		LRK54_RS16135	0.29	-0.2
3,552,781	+		LRK54_RS16135	0.29	-1.0
3,552,781	+		LRK54_RS16135	0.29	+1.8
3,552,781	+		LRK54_RS16135	0.29	-1.1
3,552,781	+		LRK54_RS16135	0.29	+0.4
3,552,781	+		LRK54_RS16135	0.29	+0.6
3,552,781	+		LRK54_RS16135	0.29	+1.4
3,552,781	+		LRK54_RS16135	0.29	-0.2
3,552,781	+		LRK54_RS16135	0.29	-2.2
3,552,781	+		LRK54_RS16135	0.29	-1.1
3,552,782	-		LRK54_RS16135	0.29	-0.8
3,552,782	-		LRK54_RS16135	0.29	-0.1
3,552,782	-		LRK54_RS16135	0.29	+0.1
3,552,782	-		LRK54_RS16135	0.29	+0.6
3,552,782	-		LRK54_RS16135	0.29	+1.6
3,552,782	-		LRK54_RS16135	0.29	-0.0
3,552,782	-		LRK54_RS16135	0.29	+0.6
3,552,782	-		LRK54_RS16135	0.29	-0.8
3,552,782	-		LRK54_RS16135	0.29	-0.5
3,552,782	-		LRK54_RS16135	0.29	+0.1
3,552,782	-		LRK54_RS16135	0.29	+0.4
3,552,782	-		LRK54_RS16135	0.29	+1.1
3,553,136	-		LRK54_RS16135	0.74	-0.6
3,553,370	+				-0.1
3,553,370	+				+1.8
3,553,370	+				-2.2
3,553,370	+				-0.9
3,553,370	+				+0.8
3,553,370	+				-0.6
3,553,370	+				-1.1
3,553,371	-				+0.8
3,553,371	-				-1.3
3,553,371	-				+0.2
3,553,371	-				-0.6
3,553,371	-				+0.4
3,553,371	-				-0.2
3,553,371	-				+0.2
3,553,371	-				-1.1
3,553,371	-				-1.1
3,553,371	-				-0.3
3,553,371	-				-0.7
3,553,371	-				+0.4
3,553,375	+				+1.3
3,553,375	+				+0.8
3,553,375	+				-0.3
3,553,375	+				+0.1
3,553,375	+				-0.8
3,553,375	+				-1.2
3,553,376	-				-0.6
3,553,376	-				+0.1
3,553,376	-				-1.6
3,553,376	-				+0.1
3,553,376	-				+0.4
3,553,376	-				+0.6
3,553,376	-				+0.6
3,553,389	+				-0.6
3,553,389	+				+0.4
3,553,389	+				-0.3
3,553,389	+				-0.0
3,553,389	+				+0.1
3,553,389	+				-0.7
3,553,390	-				+0.6
3,553,390	-				+2.3
3,553,390	-				+0.8
3,553,390	-				-2.3
3,553,390	-				-2.4
3,553,431	+				+0.8
3,553,431	+				-2.6
3,553,431	+				-0.2
3,553,431	+				+0.0
3,553,431	+				+0.5
3,553,431	+				-1.0
3,553,432	-				-0.2
3,553,432	-				+0.4
3,553,432	-				-1.4
3,553,432	-				+1.4
3,553,432	-				+2.5
3,553,432	-				+0.9
3,553,432	-				+0.0
3,553,432	-				+0.5
3,553,432	-				-0.9
3,553,432	-				+0.1
3,553,432	-				-0.3