Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15080

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,332,061	+		LRK54_RS15070	0.79	-0.9
3,332,061	+		LRK54_RS15070	0.79	+0.1
3,332,061	+		LRK54_RS15070	0.79	-0.5
3,332,061	+		LRK54_RS15070	0.79	+1.3
3,332,061	+		LRK54_RS15070	0.79	-0.6
3,332,061	+		LRK54_RS15070	0.79	-0.4
3,332,061	+		LRK54_RS15070	0.79	-2.6
3,332,061	+		LRK54_RS15070	0.79	+0.1
3,332,062	-		LRK54_RS15070	0.79	-1.4
3,332,062	-		LRK54_RS15070	0.79	+0.5
3,332,062	-		LRK54_RS15070	0.79	-0.4
3,332,062	-		LRK54_RS15070	0.79	-0.8
3,332,062	-		LRK54_RS15070	0.79	-1.1
3,332,062	-		LRK54_RS15070	0.79	-0.5
3,332,062	-		LRK54_RS15070	0.79	+0.4
3,332,328	+				+0.2
3,332,328	+				-0.4
3,332,328	+				-0.4
3,332,328	+				-1.1
3,332,328	+				+0.8
3,332,328	+				+1.0
3,332,328	+				-0.3
3,332,328	+				-0.1
3,332,328	+				+0.2
3,332,328	+				-0.8
3,332,328	+				+0.3
3,332,328	+				-0.6
3,332,328	+				-0.4
3,332,328	+				+1.1
3,332,328	+				-0.0
3,332,328	+				+0.2
3,332,328	+				-3.2
3,332,328	+				+0.4
3,332,328	+				-0.5
3,332,328	+				+3.1
3,332,328	+				-0.8
3,332,328	+				+0.7
3,332,328	+				-1.4
3,332,328	+				+0.4
3,332,328	+				+0.0
3,332,328	+				+0.4
3,332,328	+				+1.1
3,332,329	-				+1.1
3,332,329	-				-1.5
3,332,329	-				+0.4
3,332,329	-				-0.3
3,332,329	-				-1.3
3,332,329	-				-0.2
3,332,329	-				+1.2
3,332,329	-				+0.3
3,332,329	-				+0.0
3,332,329	-				-2.2
3,332,329	-				+0.9
3,332,329	-				-0.5
3,332,329	-				+0.2
3,332,329	-				-1.8
3,332,329	-				+0.6
3,332,329	-				-0.6
3,332,329	-				-0.3
3,332,460	+				-2.0
3,332,461	-				+0.9
3,332,548	+		LRK54_RS15075	0.29	+2.1
3,332,548	+		LRK54_RS15075	0.29	-0.9
3,332,549	-		LRK54_RS15075	0.29	-0.7
3,332,549	-		LRK54_RS15075	0.29	-0.9
3,332,549	-		LRK54_RS15075	0.29	-1.3
3,332,549	-		LRK54_RS15075	0.29	+0.5
3,332,608	-		LRK54_RS15075	0.42	+0.0
3,332,770	+		LRK54_RS15075	0.77	-0.3
3,332,770	+		LRK54_RS15075	0.77	-2.2
3,332,770	+		LRK54_RS15075	0.77	-0.1
3,332,770	+		LRK54_RS15075	0.77	+0.2
3,332,770	+		LRK54_RS15075	0.77	-0.6
3,332,770	+		LRK54_RS15075	0.77	-0.0
3,332,771	-		LRK54_RS15075	0.77	-0.8
3,332,771	-		LRK54_RS15075	0.77	-1.9
3,332,771	-		LRK54_RS15075	0.77	-1.6
3,332,776	+		LRK54_RS15075	0.78	-0.7
3,332,776	+		LRK54_RS15075	0.78	+0.5
3,332,776	+		LRK54_RS15075	0.78	-0.5
3,332,776	+		LRK54_RS15075	0.78	+1.5
3,332,776	+		LRK54_RS15075	0.78	-1.5
3,332,776	+		LRK54_RS15075	0.78	-1.4
3,332,776	+		LRK54_RS15075	0.78	-0.7
3,332,776	+		LRK54_RS15075	0.78	+0.5
3,332,776	+		LRK54_RS15075	0.78	-1.0
3,332,776	+		LRK54_RS15075	0.78	-0.2
3,332,776	+		LRK54_RS15075	0.78	+1.4
3,332,776	+		LRK54_RS15075	0.78	-0.3
3,332,776	+		LRK54_RS15075	0.78	-0.1
3,332,776	+		LRK54_RS15075	0.78	-0.3
3,332,776	+		LRK54_RS15075	0.78	+0.0
3,332,776	+		LRK54_RS15075	0.78	+0.4
3,332,776	+		LRK54_RS15075	0.78	+0.0
3,332,776	+		LRK54_RS15075	0.78	-0.1
3,332,776	+		LRK54_RS15075	0.78	-2.1
3,332,776	+		LRK54_RS15075	0.78	-0.5
3,332,776	+		LRK54_RS15075	0.78	-2.2
3,332,776	+		LRK54_RS15075	0.78	+0.1
3,332,776	+		LRK54_RS15075	0.78	-2.2
3,332,776	+		LRK54_RS15075	0.78	+0.4
3,332,776	+		LRK54_RS15075	0.78	+0.3
3,332,776	+		LRK54_RS15075	0.78	-0.2
3,332,776	+		LRK54_RS15075	0.78	-1.4
3,332,776	+		LRK54_RS15075	0.78	-0.3
3,332,776	+		LRK54_RS15075	0.78	-0.8
3,332,776	+		LRK54_RS15075	0.78	-0.6
3,332,777	-		LRK54_RS15075	0.78	+0.3
3,332,777	-		LRK54_RS15075	0.78	-0.8
3,332,777	-		LRK54_RS15075	0.78	-0.6
3,332,777	-		LRK54_RS15075	0.78	+0.2
3,332,777	-		LRK54_RS15075	0.78	-0.3
3,332,777	-		LRK54_RS15075	0.78	+1.7
3,332,777	-		LRK54_RS15075	0.78	+0.8
3,332,777	-		LRK54_RS15075	0.78	-1.5
3,332,777	-		LRK54_RS15075	0.78	-1.3
3,332,777	-		LRK54_RS15075	0.78	-1.2
3,332,777	-		LRK54_RS15075	0.78	+0.3
3,332,777	-		LRK54_RS15075	0.78	-1.4
3,332,777	-		LRK54_RS15075	0.78	+0.3
3,332,777	-		LRK54_RS15075	0.78	-1.4
3,332,777	-		LRK54_RS15075	0.78	+0.2
3,332,777	-		LRK54_RS15075	0.78	-2.6
3,332,777	-		LRK54_RS15075	0.78	-2.3
3,332,777	-		LRK54_RS15075	0.78	+0.7
3,332,777	-		LRK54_RS15075	0.78	-0.0
3,332,777	-		LRK54_RS15075	0.78	-2.1
3,332,777	-		LRK54_RS15075	0.78	+0.1
3,332,777	-		LRK54_RS15075	0.78	+0.3
3,332,777	-		LRK54_RS15075	0.78	-0.3
3,332,777	-		LRK54_RS15075	0.78	-1.2
3,332,777	-		LRK54_RS15075	0.78	+1.7
3,332,777	-		LRK54_RS15075	0.78	-0.5
3,332,777	-		LRK54_RS15075	0.78	-0.5
3,332,777	-		LRK54_RS15075	0.78	+0.7
3,332,777	-		LRK54_RS15075	0.78	-0.7
3,332,777	-		LRK54_RS15075	0.78	-0.3
3,332,777	-		LRK54_RS15075	0.78	-0.8
3,332,777	-		LRK54_RS15075	0.78	-1.1
3,332,777	-		LRK54_RS15075	0.78	+0.4
3,332,777	-		LRK54_RS15075	0.78	+0.7
3,332,777	-		LRK54_RS15075	0.78	+0.4
3,332,777	-		LRK54_RS15075	0.78	+0.9
3,332,819	+		LRK54_RS15075	0.87	-1.3
3,332,819	+		LRK54_RS15075	0.87	-0.3
3,332,819	+		LRK54_RS15075	0.87	+0.4
3,332,820	-		LRK54_RS15075	0.88	+0.6
3,332,926	+				+0.0
3,332,926	+				+1.4
3,332,926	+				-0.4
3,332,927	-				-0.9
3,332,927	-				-0.1
3,332,927	-				-0.3
3,332,927	-				+1.2
3,332,927	-				-0.1
3,332,927	-				-0.6
3,332,927	-				+1.4
3,332,983	+				-1.0
3,332,983	+				-1.3
3,332,983	+				-1.7
3,332,983	+				+0.4
3,332,983	+				-1.0
3,332,983	+				-0.9
3,332,983	+				+1.7
3,332,983	+				+1.2
3,332,983	+				-0.4
3,332,983	+				-0.8
3,332,983	+				-0.4
3,332,983	+				+0.5
3,332,984	-				-0.3
3,332,984	-				+0.3
3,332,984	-				-1.7
3,332,984	-				-0.3
3,332,984	-				-1.7
3,332,984	-				+1.3
3,332,984	-				-1.7
3,332,984	-				+3.3
3,332,984	-				-0.7
3,332,984	-				-0.8
3,332,984	-				-0.1
3,333,134	-		LRK54_RS15080	0.26	+0.0
3,333,134	-		LRK54_RS15080	0.26	+0.3
3,333,238	+		LRK54_RS15080	0.44	+0.0
3,333,238	+		LRK54_RS15080	0.44	-2.0
3,333,238	+		LRK54_RS15080	0.44	-0.5
3,333,238	+		LRK54_RS15080	0.44	+0.2
3,333,238	+		LRK54_RS15080	0.44	-0.5
3,333,239	-		LRK54_RS15080	0.45	+0.3
3,333,239	-		LRK54_RS15080	0.45	-1.1
3,333,239	-		LRK54_RS15080	0.45	-0.5
3,333,239	-		LRK54_RS15080	0.45	+0.7
3,333,239	-		LRK54_RS15080	0.45	+1.7
3,333,239	-		LRK54_RS15080	0.45	-1.0
3,333,280	+		LRK54_RS15080	0.52	-0.6
3,333,281	-		LRK54_RS15080	0.52	-1.3
3,333,281	-		LRK54_RS15080	0.52	-0.1
3,333,482	+		LRK54_RS15080	0.87	-1.1
3,333,482	+		LRK54_RS15080	0.87	-1.2
3,333,483	-		LRK54_RS15080	0.87	+0.7
3,333,606	+				-0.3
3,333,607	-				-2.0
3,333,607	-				-0.8
3,333,607	-				-0.4
3,333,621	+				+0.5
3,333,621	+				-0.3
3,333,621	+				+2.4
3,333,621	+				+0.2
3,333,621	+				+0.6
3,333,621	+				-0.7
3,333,621	+				-0.6
3,333,621	+				-1.4
3,333,621	+				-0.4
3,333,621	+				-0.8
3,333,621	+				+0.4
3,333,621	+				+0.3
3,333,621	+				-1.4
3,333,621	+				-0.6
3,333,621	+				+0.3
3,333,621	+				-0.5
3,333,621	+				+1.0
3,333,621	+				-0.8
3,333,621	+				+0.2
3,333,621	+				+0.3
3,333,622	-				-0.8
3,333,622	-				+0.3
3,333,622	-				-0.1
3,333,622	-				+0.7
3,333,622	-				-0.8
3,333,622	-				-2.1
3,333,622	-				+0.7
3,333,622	-				-2.2
3,333,622	-				-0.3
3,333,622	-				+0.3
3,333,622	-				-0.2
3,333,622	-				-1.5
3,333,622	-				-2.3
3,333,622	-				+0.3
3,333,622	-				-0.1
3,333,622	-				-1.7
3,333,622	-				-0.0
3,333,622	-				-0.4
3,333,648	+				+1.6
3,333,648	+				-0.7
3,333,648	+				-2.0
3,333,648	+				-0.3
3,333,648	+				-0.3
3,333,648	+				+1.0
3,333,648	+				-0.2
3,333,648	+				-0.2
3,333,648	+				-0.1
3,333,648	+				+0.0
3,333,648	+				-1.2
3,333,648	+				+0.5
3,333,648	+				-1.1
3,333,648	+				+0.7
3,333,648	+				+1.0
3,333,648	+				+0.9
3,333,648	+				+0.0
3,333,648	+				-0.7
3,333,648	+				-0.9
3,333,649	-				-0.6
3,333,649	-				-1.1
3,333,649	-				-1.1
3,333,649	-				-0.3
3,333,649	-				-0.3
3,333,649	-				-0.0
3,333,649	-				-3.2
3,333,649	-				+0.3
3,333,649	-				-0.9
3,333,649	-				+0.2
3,333,649	-				+0.7
3,333,649	-				+0.5
3,333,649	-				+0.7
3,333,649	-				+1.7
3,333,649	-				-1.4
3,333,649	-				+0.7
3,333,649	-				+0.7
3,333,649	-				-0.9
3,333,649	-				-1.6
3,333,649	-				-1.6
3,333,649	-				-0.1
3,333,669	+				-0.4
3,333,669	+				-1.4
3,333,669	+				+0.5
3,333,669	+				-2.3
3,333,669	+				+1.0
3,333,670	-				-0.3