Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14605

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,238,608	-		LRK54_RS14600	0.58	-0.1
3,238,627	-		LRK54_RS14600	0.59	+0.0
3,238,627	-		LRK54_RS14600	0.59	+1.1
3,238,627	-		LRK54_RS14600	0.59	-1.2
3,238,647	+		LRK54_RS14600	0.60	+0.2
3,238,648	-		LRK54_RS14600	0.60	+0.2
3,238,648	-		LRK54_RS14600	0.60	+1.2
3,238,648	-		LRK54_RS14600	0.60	+1.9
3,238,648	-		LRK54_RS14600	0.60	+0.3
3,238,668	+		LRK54_RS14600	0.60	+0.4
3,238,668	+		LRK54_RS14600	0.60	-1.0
3,238,668	+		LRK54_RS14600	0.60	+0.4
3,238,668	+		LRK54_RS14600	0.60	-2.2
3,238,668	+		LRK54_RS14600	0.60	-0.6
3,238,668	+		LRK54_RS14600	0.60	-0.6
3,238,668	+		LRK54_RS14600	0.60	-0.7
3,238,668	+		LRK54_RS14600	0.60	-0.3
3,238,669	-		LRK54_RS14600	0.61	-0.2
3,238,669	-		LRK54_RS14600	0.61	+0.2
3,238,669	-		LRK54_RS14600	0.61	+0.6
3,238,710	+		LRK54_RS14600	0.62	-1.2
3,238,710	+		LRK54_RS14600	0.62	-0.6
3,238,710	+		LRK54_RS14600	0.62	+0.1
3,238,711	-		LRK54_RS14600	0.62	-0.2
3,238,711	-		LRK54_RS14600	0.62	+0.0
3,238,711	-		LRK54_RS14600	0.62	+0.3
3,238,711	-		LRK54_RS14600	0.62	+0.9
3,238,851	+		LRK54_RS14600	0.69	+2.1
3,238,851	+		LRK54_RS14600	0.69	-1.3
3,238,851	+		LRK54_RS14600	0.69	+0.0
3,238,851	+		LRK54_RS14600	0.69	-1.3
3,238,851	+		LRK54_RS14600	0.69	-0.1
3,238,851	+		LRK54_RS14600	0.69	+0.5
3,238,851	+		LRK54_RS14600	0.69	-0.6
3,238,851	+		LRK54_RS14600	0.69	+0.3
3,238,851	+		LRK54_RS14600	0.69	+1.7
3,238,852	-		LRK54_RS14600	0.69	+0.5
3,238,852	-		LRK54_RS14600	0.69	+0.4
3,238,852	-		LRK54_RS14600	0.69	+1.5
3,238,852	-		LRK54_RS14600	0.69	-1.4
3,238,852	-		LRK54_RS14600	0.69	+0.4
3,238,852	-		LRK54_RS14600	0.69	-0.8
3,238,852	-		LRK54_RS14600	0.69	-0.2
3,238,852	-		LRK54_RS14600	0.69	-0.1
3,238,922	+		LRK54_RS14600	0.72	-1.3
3,238,923	-		LRK54_RS14600	0.72	+0.5
3,238,923	-		LRK54_RS14600	0.72	-1.1
3,238,929	+		LRK54_RS14600	0.72	+0.2
3,238,929	+		LRK54_RS14600	0.72	-0.2
3,238,930	-		LRK54_RS14600	0.72	+1.3
3,238,930	-		LRK54_RS14600	0.72	+2.7
3,238,930	-		LRK54_RS14600	0.72	-1.1
3,238,930	-		LRK54_RS14600	0.72	+1.5
3,239,020	+		LRK54_RS14600	0.77	+0.4
3,239,022	+		LRK54_RS14600	0.77	+2.3
3,239,022	+		LRK54_RS14600	0.77	+0.8
3,239,022	+		LRK54_RS14600	0.77	+2.7
3,239,022	+		LRK54_RS14600	0.77	+0.1
3,239,022	+		LRK54_RS14600	0.77	+0.2
3,239,022	+		LRK54_RS14600	0.77	-0.1
3,239,022	+		LRK54_RS14600	0.77	+0.2
3,239,023	-		LRK54_RS14600	0.77	+1.3
3,239,023	-		LRK54_RS14600	0.77	+1.2
3,239,023	-		LRK54_RS14600	0.77	-1.7
3,239,023	-		LRK54_RS14600	0.77	+0.0
3,239,023	-		LRK54_RS14600	0.77	-0.2
3,239,023	-		LRK54_RS14600	0.77	-1.8
3,239,023	-		LRK54_RS14600	0.77	-1.7
3,239,023	-		LRK54_RS14600	0.77	+1.5
3,239,023	-		LRK54_RS14600	0.77	-0.6
3,239,023	-		LRK54_RS14600	0.77	-0.7
3,239,023	-		LRK54_RS14600	0.77	+0.1
3,239,023	-		LRK54_RS14600	0.77	+0.4
3,239,023	-		LRK54_RS14600	0.77	+0.1
3,239,023	-		LRK54_RS14600	0.77	+0.7
3,239,043	+		LRK54_RS14600	0.78	-0.1
3,239,044	-		LRK54_RS14600	0.78	-0.4
3,239,044	-		LRK54_RS14600	0.78	-0.6
3,239,097	+		LRK54_RS14600	0.80	+0.0
3,239,097	+		LRK54_RS14600	0.80	+0.9
3,239,097	+		LRK54_RS14600	0.80	-1.1
3,239,097	+		LRK54_RS14600	0.80	+0.5
3,239,097	+		LRK54_RS14600	0.80	+0.3
3,239,097	+		LRK54_RS14600	0.80	+0.6
3,239,097	+		LRK54_RS14600	0.80	-0.8
3,239,097	+		LRK54_RS14600	0.80	-0.1
3,239,098	-		LRK54_RS14600	0.80	-0.4
3,239,098	-		LRK54_RS14600	0.80	-2.0
3,239,098	-		LRK54_RS14600	0.80	+0.5
3,239,098	-		LRK54_RS14600	0.80	-0.3
3,239,098	-		LRK54_RS14600	0.80	+1.7
3,239,098	-		LRK54_RS14600	0.80	+0.3
3,239,098	-		LRK54_RS14600	0.80	-2.3
3,239,098	-		LRK54_RS14600	0.80	+0.7
3,239,098	-		LRK54_RS14600	0.80	-0.7
3,239,098	-		LRK54_RS14600	0.80	-0.8
3,239,098	-		LRK54_RS14600	0.80	-0.8
3,239,098	-		LRK54_RS14600	0.80	-1.1
3,239,206	-		LRK54_RS14600	0.85	+2.3
3,239,511	-				-0.3
3,239,522	+				-0.5
3,239,523	-				+0.9
3,239,523	-				-0.7
3,239,545	+				-0.1
3,239,545	+				+0.5
3,239,545	+				+0.7
3,239,545	+				-0.4
3,239,545	+				-0.5
3,239,546	-				-1.7
3,239,546	-				+0.2
3,239,546	-				-0.3
3,239,546	-				-1.1
3,239,546	-				-0.2
3,239,546	-				-0.6
3,239,546	-				-2.4
3,239,548	+				+0.9
3,239,548	+				-1.1
3,239,548	+				-1.6
3,239,548	+				-1.1
3,239,548	+				+0.2
3,239,548	+				-1.8
3,239,548	+				+0.3
3,239,548	+				-0.6
3,239,548	+				-1.3
3,239,548	+				+0.7
3,239,548	+				-1.6
3,239,548	+				-1.2
3,239,548	+				-0.4
3,239,549	-				+2.2
3,239,549	-				+0.2
3,239,549	-				-0.6
3,239,549	-				-0.3
3,239,549	-				-0.6
3,239,549	-				-1.3
3,239,549	-				-2.0
3,239,549	-				-0.3
3,239,549	-				-0.3
3,239,549	-				-1.4
3,239,549	-				-2.6
3,239,577	+				-0.9
3,239,577	+				-0.6
3,239,578	-				-0.1
3,239,578	-				-0.4
3,239,578	-				-0.5
3,239,578	-				-0.7
3,239,578	-				-0.1
3,239,578	-				+0.2
3,239,611	+				-0.8
3,239,741	+		LRK54_RS14605	0.35	-0.3
3,239,742	-		LRK54_RS14605	0.35	-1.6
3,239,742	-		LRK54_RS14605	0.35	-1.3
3,239,756	+		LRK54_RS14605	0.38	-0.9
3,239,756	+		LRK54_RS14605	0.38	-0.1
3,239,756	+		LRK54_RS14605	0.38	+0.9
3,239,757	-		LRK54_RS14605	0.38	-0.3
3,239,757	-		LRK54_RS14605	0.38	-0.3
3,239,861	+		LRK54_RS14605	0.63	-0.1
3,239,861	+		LRK54_RS14605	0.63	-0.6
3,239,861	+		LRK54_RS14605	0.63	-1.5
3,239,861	+		LRK54_RS14605	0.63	-0.6
3,239,861	+		LRK54_RS14605	0.63	-2.3
3,239,861	+		LRK54_RS14605	0.63	+0.2
3,239,861	+		LRK54_RS14605	0.63	-1.0
3,239,861	+		LRK54_RS14605	0.63	+0.5
3,239,861	+		LRK54_RS14605	0.63	-1.3
3,239,861	+		LRK54_RS14605	0.63	-1.6
3,239,861	+		LRK54_RS14605	0.63	-1.1
3,239,861	+		LRK54_RS14605	0.63	-2.3
3,239,861	+		LRK54_RS14605	0.63	+0.7
3,239,861	+		LRK54_RS14605	0.63	-2.1
3,239,861	+		LRK54_RS14605	0.63	+0.0
3,239,861	+		LRK54_RS14605	0.63	-0.5
3,239,862	-		LRK54_RS14605	0.63	-0.5
3,239,862	-		LRK54_RS14605	0.63	+0.9
3,239,862	-		LRK54_RS14605	0.63	-1.8
3,239,862	-		LRK54_RS14605	0.63	-0.6
3,239,862	-		LRK54_RS14605	0.63	+0.2
3,239,862	-		LRK54_RS14605	0.63	-2.5
3,239,862	-		LRK54_RS14605	0.63	-1.7
3,239,862	-		LRK54_RS14605	0.63	+1.2
3,239,862	-		LRK54_RS14605	0.63	-1.4
3,239,862	-		LRK54_RS14605	0.63	-1.0
3,239,862	-		LRK54_RS14605	0.63	-1.3
3,239,862	-		LRK54_RS14605	0.63	-0.6
3,239,862	-		LRK54_RS14605	0.63	-0.1
3,239,862	-		LRK54_RS14605	0.63	-1.0
3,239,864	+		LRK54_RS14605	0.63	-1.5
3,239,864	+		LRK54_RS14605	0.63	-2.4
3,239,864	+		LRK54_RS14605	0.63	+0.5
3,239,864	+		LRK54_RS14605	0.63	-1.6
3,239,864	+		LRK54_RS14605	0.63	-0.5
3,239,864	+		LRK54_RS14605	0.63	+0.2
3,239,864	+		LRK54_RS14605	0.63	-0.5
3,239,864	+		LRK54_RS14605	0.63	-0.6
3,239,865	-		LRK54_RS14605	0.64	-2.6
3,239,865	-		LRK54_RS14605	0.64	-1.6
3,239,865	-		LRK54_RS14605	0.64	-1.6
3,239,865	-		LRK54_RS14605	0.64	-0.9
3,239,865	-		LRK54_RS14605	0.64	-1.1
3,239,865	-		LRK54_RS14605	0.64	-0.3
3,239,865	-		LRK54_RS14605	0.64	+2.5
3,239,865	-		LRK54_RS14605	0.64	-2.5
3,239,865	-		LRK54_RS14605	0.64	-0.3
3,239,865	-		LRK54_RS14605	0.64	-2.8
3,239,882	+		LRK54_RS14605	0.68	-0.3
3,239,882	+		LRK54_RS14605	0.68	-1.5
3,239,882	+		LRK54_RS14605	0.68	-0.2
3,239,882	+		LRK54_RS14605	0.68	-0.5
3,239,882	+		LRK54_RS14605	0.68	-1.1
3,239,883	-		LRK54_RS14605	0.68	+0.9
3,239,883	-		LRK54_RS14605	0.68	-2.6
3,239,883	-		LRK54_RS14605	0.68	-2.3
3,239,883	-		LRK54_RS14605	0.68	+1.3
3,239,883	-		LRK54_RS14605	0.68	+0.3
3,239,883	-		LRK54_RS14605	0.68	-1.6
3,239,883	-		LRK54_RS14605	0.68	+0.2
3,239,883	-		LRK54_RS14605	0.68	+0.2
3,239,883	-		LRK54_RS14605	0.68	-0.8
3,239,906	+		LRK54_RS14605	0.73	-0.0
3,239,906	+		LRK54_RS14605	0.73	-2.0
3,239,906	+		LRK54_RS14605	0.73	-0.8
3,239,906	+		LRK54_RS14605	0.73	-0.2
3,239,906	+		LRK54_RS14605	0.73	-0.8
3,239,906	+		LRK54_RS14605	0.73	-1.4
3,239,907	-		LRK54_RS14605	0.73	-1.0
3,239,907	-		LRK54_RS14605	0.73	-0.3
3,239,907	-		LRK54_RS14605	0.73	+0.0
3,239,907	-		LRK54_RS14605	0.73	-1.0
3,239,907	-		LRK54_RS14605	0.73	-0.3
3,239,907	-		LRK54_RS14605	0.73	-0.4
3,239,907	-		LRK54_RS14605	0.73	-1.6
3,239,907	-		LRK54_RS14605	0.73	+0.3
3,239,907	-		LRK54_RS14605	0.73	-0.0
3,239,960	+		LRK54_RS14605	0.86	-2.6
3,239,960	+		LRK54_RS14605	0.86	-0.7
3,239,960	+		LRK54_RS14605	0.86	+0.2
3,239,960	+		LRK54_RS14605	0.86	-0.2
3,239,960	+		LRK54_RS14605	0.86	-0.0
3,239,960	+		LRK54_RS14605	0.86	-2.4
3,239,960	+		LRK54_RS14605	0.86	-1.5
3,239,960	+		LRK54_RS14605	0.86	-0.8
3,239,961	-		LRK54_RS14605	0.86	-1.6
3,239,961	-		LRK54_RS14605	0.86	-1.7
3,239,961	-		LRK54_RS14605	0.86	+0.2
3,239,961	-		LRK54_RS14605	0.86	+0.2
3,239,961	-		LRK54_RS14605	0.86	+0.3
3,239,961	-		LRK54_RS14605	0.86	-0.4
3,239,961	-		LRK54_RS14605	0.86	-1.9
3,239,961	-		LRK54_RS14605	0.86	-1.7
3,239,961	-		LRK54_RS14605	0.86	+2.3
3,239,961	-		LRK54_RS14605	0.86	-2.7
3,239,961	-		LRK54_RS14605	0.86	+1.0
3,239,961	-		LRK54_RS14605	0.86	-0.2
3,239,961	-		LRK54_RS14605	0.86	+0.9
3,239,961	-		LRK54_RS14605	0.86	-1.2
3,239,972	+		LRK54_RS14605	0.89	+0.0
3,239,983	+				+0.5
3,239,984	+				+0.7
3,239,984	+				-1.8
3,239,984	+				+3.3
3,239,984	+				-0.6
3,239,984	+				-0.8
3,239,984	+				+0.2
3,239,984	+				-0.3
3,239,984	+				+0.9
3,239,984	+				-0.8
3,239,984	+				+0.6
3,239,984	+				-0.1
3,239,984	+				+0.0
3,239,984	+				-2.0
3,239,984	+				+0.5
3,239,984	+				-0.2
3,239,984	+				-0.2
3,239,984	+				-0.9
3,239,984	+				+0.7
3,239,984	+				+0.5
3,239,984	+				-0.3
3,239,984	+				-0.3
3,239,984	+				-1.6
3,239,984	+				+0.0
3,239,984	+				+0.9
3,239,984	+				-0.0
3,239,984	+				+0.2
3,239,984	+				+0.3
3,239,984	+				-1.1
3,239,984	+				+0.5
3,239,984	+				-1.1
3,239,984	+				-0.1
3,239,984	+				+0.1
3,239,984	+				-0.4
3,239,984	+				+0.6
3,239,984	+				-0.3
3,239,984	+				-1.1
3,239,984	+				-1.7
3,239,984	+				-1.2
3,239,984	+				-2.2
3,239,984	+				-0.7
3,239,984	+				-0.6
3,239,985	-				-0.2
3,239,985	-				-1.4
3,239,985	-				-1.3
3,239,985	-				+0.5
3,239,985	-				+0.5
3,239,985	-				-0.5
3,239,985	-				+0.7
3,239,985	-				+1.0
3,239,985	-				+0.4
3,239,985	-				+0.9
3,239,985	-				-0.7
3,239,985	-				+0.4
3,239,985	-				-1.3
3,239,985	-				-1.4
3,239,985	-				-0.3
3,239,985	-				-0.6
3,239,985	-				-0.6
3,239,985	-				-0.3
3,239,985	-				-0.1
3,239,985	-				-0.8
3,239,985	-				-0.1
3,239,985	-				+2.2
3,239,985	-				+0.1
3,239,985	-				+0.0
3,239,985	-				+0.2
3,239,985	-				-0.1
3,239,986	+				-1.4
3,239,986	+				+0.7
3,239,986	+				+0.4
3,239,987	-				-1.3
3,239,987	-				-0.4
3,240,359	+		LRK54_RS14610	0.59	+2.7
3,240,359	+		LRK54_RS14610	0.59	-0.1
3,240,359	+		LRK54_RS14610	0.59	-0.6
3,240,359	+		LRK54_RS14610	0.59	-0.5
3,240,359	+		LRK54_RS14610	0.59	-1.0
3,240,359	+		LRK54_RS14610	0.59	-0.6
3,240,359	+		LRK54_RS14610	0.59	-0.6
3,240,359	+		LRK54_RS14610	0.59	-0.8
3,240,359	+		LRK54_RS14610	0.59	+1.1
3,240,359	+		LRK54_RS14610	0.59	+0.7
3,240,359	+		LRK54_RS14610	0.59	+0.7
3,240,359	+		LRK54_RS14610	0.59	-0.2
3,240,359	+		LRK54_RS14610	0.59	-0.7
3,240,359	+		LRK54_RS14610	0.59	-0.4
3,240,360	-		LRK54_RS14610	0.60	-1.4
3,240,360	-		LRK54_RS14610	0.60	-0.4
3,240,360	-		LRK54_RS14610	0.60	+0.7
3,240,360	-		LRK54_RS14610	0.60	-2.4
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