Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14470

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
3,213,661	+		LRK54_RS14460	0.78	+0.0
3,213,661	+		LRK54_RS14460	0.78	-1.1
3,213,661	+		LRK54_RS14460	0.78	+0.5
3,213,661	+		LRK54_RS14460	0.78	-0.8
3,213,661	+		LRK54_RS14460	0.78	-1.5
3,213,661	+		LRK54_RS14460	0.78	-1.4
3,213,662	-		LRK54_RS14460	0.79	-0.4
3,213,662	-		LRK54_RS14460	0.79	+0.2
3,213,662	-		LRK54_RS14460	0.79	-1.1
3,213,662	-		LRK54_RS14460	0.79	+1.7
3,213,662	-		LRK54_RS14460	0.79	+1.7
3,213,821	+				+0.2
3,213,821	+				-0.1
3,213,821	+				-2.0
3,213,821	+				+1.7
3,213,822	-				-1.8
3,213,822	-				+2.7
3,213,822	-				-2.6
3,213,822	-				+1.7
3,213,822	-				-2.4
3,213,867	+				-2.3
3,213,867	+				-0.8
3,213,867	+				-1.6
3,213,867	+				-1.4
3,213,867	+				-0.4
3,213,868	-				+0.2
3,213,868	-				-1.4
3,213,868	-				+0.4
3,213,868	-				-0.5
3,213,868	-				+0.2
3,213,868	-				-0.6
3,213,868	-				+0.1
3,213,868	-				-1.7
3,213,868	-				-0.6
3,213,868	-				+1.2
3,213,868	-				+0.2
3,213,868	-				-0.5
3,213,875	+				-0.7
3,213,876	-				+0.3
3,213,876	-				+0.3
3,213,876	-				+0.0
3,213,965	+		LRK54_RS14465	0.12	+0.4
3,213,966	-		LRK54_RS14465	0.12	-2.3
3,214,070	+		LRK54_RS14465	0.25	+1.4
3,214,070	+		LRK54_RS14465	0.25	-0.6
3,214,070	+		LRK54_RS14465	0.25	-0.6
3,214,070	+		LRK54_RS14465	0.25	-0.4
3,214,070	+		LRK54_RS14465	0.25	-3.3
3,214,070	+		LRK54_RS14465	0.25	-0.7
3,214,070	+		LRK54_RS14465	0.25	+0.2
3,214,070	+		LRK54_RS14465	0.25	-0.6
3,214,071	-		LRK54_RS14465	0.26	-0.9
3,214,071	-		LRK54_RS14465	0.26	-1.0
3,214,071	-		LRK54_RS14465	0.26	-2.1
3,214,071	-		LRK54_RS14465	0.26	-0.3
3,214,071	-		LRK54_RS14465	0.26	+0.6
3,214,071	-		LRK54_RS14465	0.26	+0.7
3,214,151	+		LRK54_RS14465	0.36	-0.8
3,214,151	+		LRK54_RS14465	0.36	+0.2
3,214,151	+		LRK54_RS14465	0.36	-1.6
3,214,151	+		LRK54_RS14465	0.36	-0.6
3,214,151	+		LRK54_RS14465	0.36	-0.1
3,214,151	+		LRK54_RS14465	0.36	+0.4
3,214,152	-		LRK54_RS14465	0.36	-2.0
3,214,152	-		LRK54_RS14465	0.36	-1.6
3,214,152	-		LRK54_RS14465	0.36	+0.6
3,214,152	-		LRK54_RS14465	0.36	+0.3
3,214,152	-		LRK54_RS14465	0.36	+1.7
3,214,311	-		LRK54_RS14465	0.57	-1.2
3,214,311	-		LRK54_RS14465	0.57	-2.2
3,214,311	-		LRK54_RS14465	0.57	+0.9
3,214,636	+				-1.1
3,214,636	+				+1.7
3,214,636	+				-0.8
3,214,636	+				+0.2
3,214,636	+				-0.8
3,214,636	+				-2.0
3,214,636	+				+0.3
3,214,636	+				+1.2
3,214,636	+				+0.2
3,214,636	+				+0.5
3,214,636	+				+0.4
3,214,636	+				-0.1
3,214,636	+				+0.2
3,214,636	+				-2.3
3,214,636	+				-0.3
3,214,636	+				+1.1
3,214,636	+				+1.7
3,214,637	-				-1.3
3,214,637	-				-1.7
3,214,637	-				-1.1
3,214,637	-				-1.6
3,214,637	-				-0.5
3,214,637	-				-0.4
3,214,637	-				-1.5
3,214,637	-				+1.2
3,214,637	-				-0.6
3,214,637	-				-1.3
3,214,637	-				-0.0
3,214,637	-				-2.4
3,214,751	+		LRK54_RS14470	0.18	-3.6
3,214,762	+		LRK54_RS14470	0.19	-0.4
3,214,762	+		LRK54_RS14470	0.19	+0.3
3,214,762	+		LRK54_RS14470	0.19	+0.2
3,214,762	+		LRK54_RS14470	0.19	-2.5
3,214,762	+		LRK54_RS14470	0.19	-2.6
3,214,762	+		LRK54_RS14470	0.19	-0.9
3,214,762	+		LRK54_RS14470	0.19	-0.1
3,214,762	+		LRK54_RS14470	0.19	-1.4
3,214,762	+		LRK54_RS14470	0.19	+1.7
3,214,762	+		LRK54_RS14470	0.19	-2.2
3,214,763	-		LRK54_RS14470	0.20	+2.7
3,214,763	-		LRK54_RS14470	0.20	-1.1
3,214,763	-		LRK54_RS14470	0.20	-0.8
3,214,763	-		LRK54_RS14470	0.20	-2.1
3,214,763	-		LRK54_RS14470	0.20	+0.3
3,214,763	-		LRK54_RS14470	0.20	+0.6
3,214,763	-		LRK54_RS14470	0.20	-1.4
3,214,763	-		LRK54_RS14470	0.20	-1.7
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,763	-		LRK54_RS14470	0.20	+0.7
3,214,763	-		LRK54_RS14470	0.20	-0.8
3,214,763	-		LRK54_RS14470	0.20	-0.6
3,214,763	-		LRK54_RS14470	0.20	-0.6
3,214,768	+		LRK54_RS14470	0.20	-0.9
3,214,768	+		LRK54_RS14470	0.20	+0.7
3,214,768	+		LRK54_RS14470	0.20	+1.7
3,214,768	+		LRK54_RS14470	0.20	-1.8
3,214,768	+		LRK54_RS14470	0.20	-2.7
3,214,768	+		LRK54_RS14470	0.20	+0.2
3,214,768	+		LRK54_RS14470	0.20	-0.4
3,214,768	+		LRK54_RS14470	0.20	-1.3
3,214,768	+		LRK54_RS14470	0.20	-1.2
3,214,769	-		LRK54_RS14470	0.21	-3.4
3,214,769	-		LRK54_RS14470	0.21	-2.7
3,214,769	-		LRK54_RS14470	0.21	-1.4
3,214,769	-		LRK54_RS14470	0.21	-2.6
3,214,769	-		LRK54_RS14470	0.21	-2.1
3,214,769	-		LRK54_RS14470	0.21	-0.8
3,214,769	-		LRK54_RS14470	0.21	-2.7
3,214,769	-		LRK54_RS14470	0.21	-1.0
3,214,849	+		LRK54_RS14470	0.33	-1.6
3,214,849	+		LRK54_RS14470	0.33	-0.8
3,214,849	+		LRK54_RS14470	0.33	+1.7
3,214,849	+		LRK54_RS14470	0.33	+0.5
3,214,849	+		LRK54_RS14470	0.33	-1.1
3,214,849	+		LRK54_RS14470	0.33	-2.0
3,214,849	+		LRK54_RS14470	0.33	-0.8
3,214,849	+		LRK54_RS14470	0.33	-1.1
3,214,849	+		LRK54_RS14470	0.33	+0.2
3,214,849	+		LRK54_RS14470	0.33	-1.7
3,214,849	+		LRK54_RS14470	0.33	-2.8
3,214,849	+		LRK54_RS14470	0.33	-2.9
3,214,849	+		LRK54_RS14470	0.33	-0.3
3,214,849	+		LRK54_RS14470	0.33	+0.2
3,214,849	+		LRK54_RS14470	0.33	-1.5
3,214,849	+		LRK54_RS14470	0.33	-1.3
3,214,850	-		LRK54_RS14470	0.34	-0.3
3,214,850	-		LRK54_RS14470	0.34	-1.3
3,214,850	-		LRK54_RS14470	0.34	-2.1
3,214,850	-		LRK54_RS14470	0.34	+0.9
3,214,850	-		LRK54_RS14470	0.34	-1.3
3,214,850	-		LRK54_RS14470	0.34	-1.4
3,214,850	-		LRK54_RS14470	0.34	-0.8
3,214,850	-		LRK54_RS14470	0.34	-1.1
3,214,850	-		LRK54_RS14470	0.34	-1.1
3,214,850	-		LRK54_RS14470	0.34	-0.6
3,214,850	-		LRK54_RS14470	0.34	-2.1
3,214,850	-		LRK54_RS14470	0.34	-1.4
3,214,850	-		LRK54_RS14470	0.34	-1.0
3,214,850	-		LRK54_RS14470	0.34	-0.6
3,214,850	-		LRK54_RS14470	0.34	+0.0
3,214,850	-		LRK54_RS14470	0.34	-0.4
3,214,850	-		LRK54_RS14470	0.34	-0.6
3,214,850	-		LRK54_RS14470	0.34	-2.6
3,214,907	+		LRK54_RS14470	0.43	-0.3
3,214,907	+		LRK54_RS14470	0.43	-2.0
3,214,907	+		LRK54_RS14470	0.43	-0.6
3,214,907	+		LRK54_RS14470	0.43	+0.0
3,214,907	+		LRK54_RS14470	0.43	-1.4
3,214,907	+		LRK54_RS14470	0.43	-1.7
3,214,908	-		LRK54_RS14470	0.43	+1.7
3,214,908	-		LRK54_RS14470	0.43	-1.4
3,214,908	-		LRK54_RS14470	0.43	-2.2
3,214,908	-		LRK54_RS14470	0.43	-0.8
3,214,908	-		LRK54_RS14470	0.43	-0.6
3,214,908	-		LRK54_RS14470	0.43	+0.7
3,214,908	-		LRK54_RS14470	0.43	-0.7
3,214,933	+		LRK54_RS14470	0.47	-0.3
3,214,933	+		LRK54_RS14470	0.47	-2.1
3,214,933	+		LRK54_RS14470	0.47	-0.3
3,214,933	+		LRK54_RS14470	0.47	+0.7
3,214,933	+		LRK54_RS14470	0.47	-2.1
3,214,934	-		LRK54_RS14470	0.47	-2.8
3,214,934	-		LRK54_RS14470	0.47	-2.0
3,214,934	-		LRK54_RS14470	0.47	-2.8
3,214,934	-		LRK54_RS14470	0.47	-0.8
3,214,934	-		LRK54_RS14470	0.47	-0.8
3,214,934	-		LRK54_RS14470	0.47	-2.1
3,214,951	+		LRK54_RS14470	0.50	-0.3
3,214,951	+		LRK54_RS14470	0.50	+0.7
3,214,951	+		LRK54_RS14470	0.50	-1.6
3,214,951	+		LRK54_RS14470	0.50	-0.4
3,214,952	-		LRK54_RS14470	0.50	-2.0
3,214,952	-		LRK54_RS14470	0.50	-1.8
3,214,952	-		LRK54_RS14470	0.50	-1.1
3,214,952	-		LRK54_RS14470	0.50	-0.6
3,214,952	-		LRK54_RS14470	0.50	-3.4
3,214,952	-		LRK54_RS14470	0.50	+0.3
3,214,952	-		LRK54_RS14470	0.50	-0.2
3,214,952	-		LRK54_RS14470	0.50	-0.8
3,214,952	-		LRK54_RS14470	0.50	-0.9
3,215,011	+		LRK54_RS14470	0.60	-2.6
3,215,011	+		LRK54_RS14470	0.60	-1.3
3,215,011	+		LRK54_RS14470	0.60	-1.1
3,215,011	+		LRK54_RS14470	0.60	-2.4
3,215,011	+		LRK54_RS14470	0.60	-1.7
3,215,011	+		LRK54_RS14470	0.60	-1.6
3,215,011	+		LRK54_RS14470	0.60	-0.6
3,215,011	+		LRK54_RS14470	0.60	-1.4
3,215,012	-		LRK54_RS14470	0.60	-0.6
3,215,012	-		LRK54_RS14470	0.60	-2.4
3,215,012	-		LRK54_RS14470	0.60	-2.1
3,215,012	-		LRK54_RS14470	0.60	-2.2
3,215,012	-		LRK54_RS14470	0.60	-1.2
3,215,027	-		LRK54_RS14470	0.62	-0.4
3,215,047	+		LRK54_RS14470	0.65	-2.2
3,215,047	+		LRK54_RS14470	0.65	+1.7
3,215,047	+		LRK54_RS14470	0.65	-1.5
3,215,047	+		LRK54_RS14470	0.65	-0.6
3,215,048	-		LRK54_RS14470	0.66	-0.8
3,215,048	-		LRK54_RS14470	0.66	-2.5
3,215,048	-		LRK54_RS14470	0.66	+0.3
3,215,063	-		LRK54_RS14470	0.68	+1.7
3,215,063	-		LRK54_RS14470	0.68	-0.8
3,215,063	-		LRK54_RS14470	0.68	-1.4
3,215,131	+		LRK54_RS14470	0.79	+1.4
3,215,132	-		LRK54_RS14470	0.79	-2.0
3,215,132	-		LRK54_RS14470	0.79	-1.2
3,215,132	-		LRK54_RS14470	0.79	-1.3
3,215,132	-		LRK54_RS14470	0.79	-1.6
3,215,132	-		LRK54_RS14470	0.79	-0.6
3,215,146	+		LRK54_RS14470	0.81	-1.8
3,215,146	+		LRK54_RS14470	0.81	-2.8
3,215,146	+		LRK54_RS14470	0.81	-1.4
3,215,146	+		LRK54_RS14470	0.81	-1.8
3,215,146	+		LRK54_RS14470	0.81	-2.0
3,215,146	+		LRK54_RS14470	0.81	-1.1
3,215,146	+		LRK54_RS14470	0.81	-1.6
3,215,147	-		LRK54_RS14470	0.81	+0.7
3,215,147	-		LRK54_RS14470	0.81	-0.3
3,215,147	-		LRK54_RS14470	0.81	-0.6
3,215,147	-		LRK54_RS14470	0.81	-1.4
3,215,147	-		LRK54_RS14470	0.81	-2.0
3,215,147	-		LRK54_RS14470	0.81	-1.1
3,215,147	-		LRK54_RS14470	0.81	-3.1
3,215,147	-		LRK54_RS14470	0.81	-0.7
3,215,147	-		LRK54_RS14470	0.81	-0.8
3,215,147	-		LRK54_RS14470	0.81	-0.8
3,215,147	-		LRK54_RS14470	0.81	-2.3
3,215,147	-		LRK54_RS14470	0.81	-0.4
3,215,152	+		LRK54_RS14470	0.82	-1.1
3,215,152	+		LRK54_RS14470	0.82	-1.4
3,215,152	+		LRK54_RS14470	0.82	+0.2
3,215,152	+		LRK54_RS14470	0.82	-2.7
3,215,152	+		LRK54_RS14470	0.82	-0.8
3,215,153	-		LRK54_RS14470	0.82	-2.4
3,215,153	-		LRK54_RS14470	0.82	-1.1
3,215,214	+				-0.4
3,215,215	-				-1.3
3,215,215	-				-1.3
3,215,215	-				-1.1
3,215,325	+				-0.2
3,215,325	+				+0.7
3,215,325	+				-1.3
3,215,325	+				-2.6
3,215,325	+				-1.1
3,215,325	+				-2.3
3,215,325	+				-1.4
3,215,326	-				-1.6
3,215,326	-				-1.1
3,215,326	-				-2.6
3,215,326	-				+0.7
3,215,326	-				+1.0
3,215,347	+				-1.5
3,215,347	+				-0.0
3,215,347	+				-2.4
3,215,347	+				+0.6
3,215,347	+				+1.7
3,215,347	+				-0.3
3,215,347	+				+0.1
3,215,347	+				-1.6
3,215,347	+				-0.3
3,215,347	+				-0.1
3,215,347	+				+1.0
3,215,347	+				-1.2
3,215,347	+				-0.2
3,215,347	+				+1.3
3,215,347	+				+0.6
3,215,347	+				-0.4
3,215,347	+				-0.4
3,215,347	+				+2.0
3,215,347	+				-1.2
3,215,347	+				-0.6
3,215,347	+				-1.7
3,215,347	+				+0.7
3,215,347	+				+0.3
3,215,347	+				-0.6
3,215,347	+				+0.4
3,215,347	+				+0.5
3,215,347	+				+1.4
3,215,347	+				-1.4
3,215,347	+				+0.2
3,215,347	+				-2.9
3,215,347	+				-0.2
3,215,347	+				-0.2
3,215,347	+				+1.2
3,215,347	+				-0.1
3,215,347	+				-0.6
3,215,347	+				+0.5
3,215,347	+				+0.2
3,215,347	+				+1.4
3,215,347	+				+0.3
3,215,347	+				+0.1
3,215,347	+				+1.0
3,215,347	+				+0.7
3,215,347	+				-0.2
3,215,347	+				+1.5
3,215,348	-				+0.6
3,215,348	-				+0.2
3,215,348	-				+0.1
3,215,348	-				-1.3
3,215,348	-				+0.1
3,215,348	-				+2.0
3,215,348	-				+2.6
3,215,348	-				-1.0
3,215,348	-				+0.0
3,215,348	-				-1.8
3,215,348	-				+0.4
3,215,348	-				-2.3
3,215,348	-				+0.3
3,215,348	-				+0.4
3,215,348	-				-1.6
3,215,348	-				-1.4
3,215,348	-				+0.2
3,215,348	-				+0.2
3,215,348	-				-0.1
3,215,348	-				-0.8
3,215,348	-				+0.6
3,215,348	-				-0.1
3,215,348	-				-0.7
3,215,348	-				-1.1
3,215,348	-				+1.2
3,215,348	-				-1.0
3,215,348	-				+1.7
3,215,348	-				+0.2
3,215,348	-				-1.1
3,215,348	-				+2.2
3,215,348	-				+1.4
3,215,348	-				-0.5
3,215,348	-				-0.4
3,215,348	-				+0.2
3,215,348	-				-0.4
3,215,348	-				-0.6
3,215,348	-				-1.0
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3,215,348	-				-0.7
3,215,348	-				+1.5
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3,215,348	-				-1.3
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3,215,368	+				-0.4
3,215,368	+				-0.8
3,215,368	+				-3.1
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