Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05600

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,206,651	-		LRK54_RS05590	0.81	-0.4
1,206,699	+		LRK54_RS05590	0.86	-0.7
1,206,699	+		LRK54_RS05590	0.86	-0.8
1,206,699	+		LRK54_RS05590	0.86	-1.3
1,206,699	+		LRK54_RS05590	0.86	-0.8
1,206,699	+		LRK54_RS05590	0.86	-0.2
1,206,699	+		LRK54_RS05590	0.86	-2.2
1,206,700	-		LRK54_RS05590	0.86	-0.2
1,206,700	-		LRK54_RS05590	0.86	-0.0
1,206,700	-		LRK54_RS05590	0.86	-1.1
1,206,700	-		LRK54_RS05590	0.86	-2.9
1,206,700	-		LRK54_RS05590	0.86	-1.6
1,206,700	-		LRK54_RS05590	0.86	+0.0
1,206,722	+		LRK54_RS05590	0.88	-2.1
1,206,722	+		LRK54_RS05590	0.88	-2.9
1,206,722	+		LRK54_RS05590	0.88	-0.4
1,206,722	+		LRK54_RS05590	0.88	-1.7
1,206,722	+		LRK54_RS05590	0.88	+1.3
1,206,722	+		LRK54_RS05590	0.88	-0.8
1,206,722	+		LRK54_RS05590	0.88	-1.4
1,206,722	+		LRK54_RS05590	0.88	-1.4
1,206,722	+		LRK54_RS05590	0.88	-0.2
1,206,722	+		LRK54_RS05590	0.88	-1.6
1,206,722	+		LRK54_RS05590	0.88	+0.8
1,206,723	-		LRK54_RS05590	0.88	-1.1
1,206,723	-		LRK54_RS05590	0.88	-1.8
1,206,723	-		LRK54_RS05590	0.88	-1.1
1,206,723	-		LRK54_RS05590	0.88	-1.4
1,206,723	-		LRK54_RS05590	0.88	-0.5
1,206,723	-		LRK54_RS05590	0.88	+0.6
1,206,723	-		LRK54_RS05590	0.88	-2.9
1,206,723	-		LRK54_RS05590	0.88	-0.9
1,206,723	-		LRK54_RS05590	0.88	-0.4
1,206,723	-		LRK54_RS05590	0.88	-0.1
1,206,745	+				-0.5
1,206,745	+				-1.5
1,206,745	+				-2.2
1,206,745	+				+0.8
1,206,746	-				-1.4
1,206,746	-				+0.1
1,206,746	-				+0.8
1,206,875	-				-0.2
1,206,875	-				-0.6
1,206,875	-				-0.4
1,206,920	+		LRK54_RS05595	0.12	-0.8
1,206,920	+		LRK54_RS05595	0.12	+1.5
1,206,920	+		LRK54_RS05595	0.12	+0.0
1,206,920	+		LRK54_RS05595	0.12	+0.2
1,206,920	+		LRK54_RS05595	0.12	-0.4
1,206,920	+		LRK54_RS05595	0.12	+0.4
1,206,920	+		LRK54_RS05595	0.12	+0.6
1,206,921	-		LRK54_RS05595	0.12	+0.2
1,206,921	-		LRK54_RS05595	0.12	-1.1
1,206,921	-		LRK54_RS05595	0.12	+1.2
1,206,921	-		LRK54_RS05595	0.12	-0.1
1,206,932	-		LRK54_RS05595	0.14	-0.8
1,207,018	+		LRK54_RS05595	0.24	+0.8
1,207,018	+		LRK54_RS05595	0.24	-0.4
1,207,019	-		LRK54_RS05595	0.24	-0.2
1,207,019	-		LRK54_RS05595	0.24	-0.2
1,207,019	-		LRK54_RS05595	0.24	+2.2
1,207,048	+		LRK54_RS05595	0.28	-1.4
1,207,048	+		LRK54_RS05595	0.28	-1.0
1,207,048	+		LRK54_RS05595	0.28	+0.2
1,207,048	+		LRK54_RS05595	0.28	-0.7
1,207,048	+		LRK54_RS05595	0.28	-3.2
1,207,049	-		LRK54_RS05595	0.28	-0.1
1,207,049	-		LRK54_RS05595	0.28	+0.8
1,207,049	-		LRK54_RS05595	0.28	-1.8
1,207,049	-		LRK54_RS05595	0.28	-0.8
1,207,049	-		LRK54_RS05595	0.28	-2.7
1,207,049	-		LRK54_RS05595	0.28	-1.1
1,207,049	-		LRK54_RS05595	0.28	-1.6
1,207,049	-		LRK54_RS05595	0.28	-0.8
1,207,049	-		LRK54_RS05595	0.28	+0.4
1,207,049	-		LRK54_RS05595	0.28	-1.0
1,207,049	-		LRK54_RS05595	0.28	+1.3
1,207,049	-		LRK54_RS05595	0.28	-0.1
1,207,049	-		LRK54_RS05595	0.28	-0.2
1,207,072	+		LRK54_RS05595	0.31	+0.1
1,207,072	+		LRK54_RS05595	0.31	-0.4
1,207,072	+		LRK54_RS05595	0.31	+0.0
1,207,072	+		LRK54_RS05595	0.31	-0.8
1,207,072	+		LRK54_RS05595	0.31	-0.8
1,207,072	+		LRK54_RS05595	0.31	-2.5
1,207,072	+		LRK54_RS05595	0.31	-0.6
1,207,072	+		LRK54_RS05595	0.31	+1.3
1,207,072	+		LRK54_RS05595	0.31	-1.6
1,207,072	+		LRK54_RS05595	0.31	+1.0
1,207,072	+		LRK54_RS05595	0.31	+0.1
1,207,072	+		LRK54_RS05595	0.31	+0.3
1,207,072	+		LRK54_RS05595	0.31	-1.2
1,207,072	+		LRK54_RS05595	0.31	-1.2
1,207,072	+		LRK54_RS05595	0.31	-0.4
1,207,072	+		LRK54_RS05595	0.31	-0.7
1,207,073	-		LRK54_RS05595	0.31	-0.9
1,207,073	-		LRK54_RS05595	0.31	-1.1
1,207,073	-		LRK54_RS05595	0.31	+0.0
1,207,073	-		LRK54_RS05595	0.31	+0.1
1,207,073	-		LRK54_RS05595	0.31	+0.2
1,207,073	-		LRK54_RS05595	0.31	+0.3
1,207,073	-		LRK54_RS05595	0.31	-1.4
1,207,073	-		LRK54_RS05595	0.31	+0.5
1,207,073	-		LRK54_RS05595	0.31	-0.4
1,207,073	-		LRK54_RS05595	0.31	+1.8
1,207,073	-		LRK54_RS05595	0.31	+0.8
1,207,073	-		LRK54_RS05595	0.31	+0.1
1,207,073	-		LRK54_RS05595	0.31	-2.0
1,207,073	-		LRK54_RS05595	0.31	-0.5
1,207,073	-		LRK54_RS05595	0.31	-0.9
1,207,073	-		LRK54_RS05595	0.31	-0.3
1,207,073	-		LRK54_RS05595	0.31	+0.8
1,207,073	-		LRK54_RS05595	0.31	-1.6
1,207,149	+		LRK54_RS05595	0.40	-1.7
1,207,149	+		LRK54_RS05595	0.40	-0.7
1,207,149	+		LRK54_RS05595	0.40	-0.1
1,207,150	-		LRK54_RS05595	0.40	-1.6
1,207,151	+		LRK54_RS05595	0.40	+0.6
1,207,151	+		LRK54_RS05595	0.40	-1.2
1,207,151	+		LRK54_RS05595	0.40	+1.8
1,207,151	+		LRK54_RS05595	0.40	-1.1
1,207,152	-		LRK54_RS05595	0.41	-1.6
1,207,152	-		LRK54_RS05595	0.41	-0.9
1,207,152	-		LRK54_RS05595	0.41	+0.8
1,207,152	-		LRK54_RS05595	0.41	-1.1
1,207,152	-		LRK54_RS05595	0.41	-0.5
1,207,152	-		LRK54_RS05595	0.41	+0.1
1,207,152	-		LRK54_RS05595	0.41	-1.4
1,207,152	-		LRK54_RS05595	0.41	+1.2
1,207,152	-		LRK54_RS05595	0.41	-1.0
1,207,152	-		LRK54_RS05595	0.41	-3.2
1,207,261	+		LRK54_RS05595	0.54	+1.0
1,207,261	+		LRK54_RS05595	0.54	-0.3
1,207,261	+		LRK54_RS05595	0.54	+0.6
1,207,261	+		LRK54_RS05595	0.54	-0.2
1,207,261	+		LRK54_RS05595	0.54	-1.2
1,207,261	+		LRK54_RS05595	0.54	+0.4
1,207,262	-		LRK54_RS05595	0.54	-1.2
1,207,262	-		LRK54_RS05595	0.54	+1.0
1,207,262	-		LRK54_RS05595	0.54	+0.3
1,207,262	-		LRK54_RS05595	0.54	-0.3
1,207,262	-		LRK54_RS05595	0.54	-0.6
1,207,262	-		LRK54_RS05595	0.54	-1.4
1,207,262	-		LRK54_RS05595	0.54	+0.3
1,207,262	-		LRK54_RS05595	0.54	-1.4
1,207,262	-		LRK54_RS05595	0.54	-2.4
1,207,262	-		LRK54_RS05595	0.54	-1.6
1,207,264	+		LRK54_RS05595	0.54	-0.6
1,207,264	+		LRK54_RS05595	0.54	-0.1
1,207,264	+		LRK54_RS05595	0.54	-0.8
1,207,264	+		LRK54_RS05595	0.54	-1.0
1,207,264	+		LRK54_RS05595	0.54	+1.8
1,207,264	+		LRK54_RS05595	0.54	-0.8
1,207,264	+		LRK54_RS05595	0.54	+0.2
1,207,264	+		LRK54_RS05595	0.54	-1.9
1,207,264	+		LRK54_RS05595	0.54	-0.6
1,207,264	+		LRK54_RS05595	0.54	-0.2
1,207,264	+		LRK54_RS05595	0.54	-0.8
1,207,264	+		LRK54_RS05595	0.54	-0.6
1,207,264	+		LRK54_RS05595	0.54	-1.2
1,207,264	+		LRK54_RS05595	0.54	-1.1
1,207,264	+		LRK54_RS05595	0.54	-0.4
1,207,264	+		LRK54_RS05595	0.54	-0.1
1,207,264	+		LRK54_RS05595	0.54	-1.2
1,207,264	+		LRK54_RS05595	0.54	+1.5
1,207,264	+		LRK54_RS05595	0.54	-1.8
1,207,264	+		LRK54_RS05595	0.54	-1.1
1,207,264	+		LRK54_RS05595	0.54	+2.3
1,207,264	+		LRK54_RS05595	0.54	+1.2
1,207,264	+		LRK54_RS05595	0.54	+1.8
1,207,264	+		LRK54_RS05595	0.54	-1.7
1,207,264	+		LRK54_RS05595	0.54	-2.3
1,207,264	+		LRK54_RS05595	0.54	+0.0
1,207,264	+		LRK54_RS05595	0.54	-2.2
1,207,264	+		LRK54_RS05595	0.54	-1.0
1,207,264	+		LRK54_RS05595	0.54	-0.7
1,207,264	+		LRK54_RS05595	0.54	-0.6
1,207,265	-		LRK54_RS05595	0.54	+0.6
1,207,265	-		LRK54_RS05595	0.54	-0.8
1,207,265	-		LRK54_RS05595	0.54	-2.2
1,207,265	-		LRK54_RS05595	0.54	+0.5
1,207,265	-		LRK54_RS05595	0.54	+0.3
1,207,265	-		LRK54_RS05595	0.54	+2.1
1,207,265	-		LRK54_RS05595	0.54	-0.1
1,207,265	-		LRK54_RS05595	0.54	-0.2
1,207,265	-		LRK54_RS05595	0.54	+0.9
1,207,265	-		LRK54_RS05595	0.54	-0.7
1,207,265	-		LRK54_RS05595	0.54	-2.2
1,207,265	-		LRK54_RS05595	0.54	-0.1
1,207,265	-		LRK54_RS05595	0.54	-2.2
1,207,265	-		LRK54_RS05595	0.54	-0.4
1,207,265	-		LRK54_RS05595	0.54	+0.8
1,207,265	-		LRK54_RS05595	0.54	-3.0
1,207,265	-		LRK54_RS05595	0.54	-0.9
1,207,265	-		LRK54_RS05595	0.54	-1.7
1,207,265	-		LRK54_RS05595	0.54	-0.7
1,207,265	-		LRK54_RS05595	0.54	-1.6
1,207,265	-		LRK54_RS05595	0.54	+0.6
1,207,270	+		LRK54_RS05595	0.55	-0.6
1,207,270	+		LRK54_RS05595	0.55	-0.7
1,207,271	-		LRK54_RS05595	0.55	+3.8
1,207,271	-		LRK54_RS05595	0.55	-1.6
1,207,329	+		LRK54_RS05595	0.62	-0.3
1,207,329	+		LRK54_RS05595	0.62	-1.4
1,207,329	+		LRK54_RS05595	0.62	-1.4
1,207,329	+		LRK54_RS05595	0.62	+0.3
1,207,329	+		LRK54_RS05595	0.62	+1.8
1,207,329	+		LRK54_RS05595	0.62	-0.3
1,207,329	+		LRK54_RS05595	0.62	-0.3
1,207,330	-		LRK54_RS05595	0.62	-0.8
1,207,330	-		LRK54_RS05595	0.62	-0.9
1,207,363	+		LRK54_RS05595	0.66	-0.8
1,207,364	-		LRK54_RS05595	0.66	-0.8
1,207,364	-		LRK54_RS05595	0.66	-0.4
1,207,364	-		LRK54_RS05595	0.66	-1.2
1,207,483	+		LRK54_RS05595	0.81	-0.0
1,207,483	+		LRK54_RS05595	0.81	-0.2
1,207,521	+		LRK54_RS05595	0.85	-2.2
1,207,521	+		LRK54_RS05595	0.85	-0.2
1,207,521	+		LRK54_RS05595	0.85	-0.2
1,207,521	+		LRK54_RS05595	0.85	-0.2
1,207,521	+		LRK54_RS05595	0.85	+0.8
1,207,521	+		LRK54_RS05595	0.85	+1.8
1,207,521	+		LRK54_RS05595	0.85	-1.4
1,207,521	+		LRK54_RS05595	0.85	-1.8
1,207,521	+		LRK54_RS05595	0.85	-1.4
1,207,521	+		LRK54_RS05595	0.85	+0.3
1,207,521	+		LRK54_RS05595	0.85	-0.4
1,207,522	-		LRK54_RS05595	0.86	-1.1
1,207,522	-		LRK54_RS05595	0.86	-1.1
1,207,522	-		LRK54_RS05595	0.86	-0.3
1,207,522	-		LRK54_RS05595	0.86	-2.2
1,207,522	-		LRK54_RS05595	0.86	+0.0
1,207,522	-		LRK54_RS05595	0.86	+0.2
1,207,522	-		LRK54_RS05595	0.86	+0.3
1,207,522	-		LRK54_RS05595	0.86	-0.1
1,207,522	-		LRK54_RS05595	0.86	+0.7
1,207,527	+		LRK54_RS05595	0.86	-0.6
1,207,527	+		LRK54_RS05595	0.86	-0.9
1,207,527	+		LRK54_RS05595	0.86	-1.9
1,207,527	+		LRK54_RS05595	0.86	-0.2
1,207,527	+		LRK54_RS05595	0.86	-1.6
1,207,527	+		LRK54_RS05595	0.86	+1.8
1,207,527	+		LRK54_RS05595	0.86	-0.1
1,207,527	+		LRK54_RS05595	0.86	+0.4
1,207,527	+		LRK54_RS05595	0.86	-0.6
1,207,528	-		LRK54_RS05595	0.86	-1.5
1,207,528	-		LRK54_RS05595	0.86	-0.6
1,207,528	-		LRK54_RS05595	0.86	-0.2
1,207,528	-		LRK54_RS05595	0.86	+0.6
1,207,528	-		LRK54_RS05595	0.86	-0.8
1,207,528	-		LRK54_RS05595	0.86	-1.5
1,207,528	-		LRK54_RS05595	0.86	+2.3
1,207,528	-		LRK54_RS05595	0.86	-0.6
1,207,528	-		LRK54_RS05595	0.86	+0.4
1,207,528	-		LRK54_RS05595	0.86	-2.4
1,207,569	+				-0.6
1,207,569	+				-0.6
1,207,569	+				-0.5
1,207,569	+				-0.5
1,207,569	+				-1.7
1,207,569	+				-0.4
1,207,569	+				-2.1
1,207,569	+				-0.7
1,207,569	+				-2.1
1,207,569	+				+1.0
1,207,569	+				-1.2
1,207,570	-				-1.2
1,207,570	-				+3.3
1,207,570	-				-0.9
1,207,570	-				+0.2
1,207,570	-				-0.1
1,207,570	-				-0.7
1,207,570	-				-0.6
1,207,570	-				-1.7
1,207,570	-				+0.3
1,207,575	-				-0.1
1,207,584	+				-0.8
1,207,584	+				-1.3
1,207,584	+				-0.1
1,207,584	+				-0.9
1,207,584	+				+0.3
1,207,584	+				-1.9
1,207,584	+				-1.9
1,207,584	+				-1.7
1,207,585	-				-1.2
1,207,585	-				-0.3
1,207,585	-				-0.4
1,207,585	-				-0.8
1,207,585	-				-1.4
1,207,585	-				-1.5
1,207,585	-				+0.8
1,207,585	-				+2.6
1,207,585	-				-0.2
1,207,596	+				+0.4
1,207,596	+				-0.0
1,207,596	+				+0.7
1,207,596	+				-2.2
1,207,597	-				-0.1
1,207,597	-				-0.2
1,207,665	+				-1.4
1,207,665	+				-0.6
1,207,665	+				-0.8
1,207,665	+				-0.8
1,207,665	+				+0.6
1,207,665	+				+0.6
1,207,665	+				-0.7
1,207,665	+				-0.1
1,207,665	+				-1.0
1,207,665	+				+0.2
1,207,665	+				+1.3
1,207,665	+				+0.3
1,207,665	+				+0.2
1,207,665	+				-0.5
1,207,665	+				-0.1
1,207,666	-				-0.1
1,207,666	-				-0.4
1,207,666	-				-0.6
1,207,666	-				-0.5
1,207,666	-				-0.6
1,207,666	-				-1.8
1,207,666	-				+0.4
1,207,666	-				+0.4
1,207,666	-				+0.9
1,207,668	+				+1.1
1,207,668	+				-2.2
1,207,668	+				-1.1
1,207,668	+				-1.4
1,207,668	+				+0.3
1,207,669	-				-0.2
1,207,669	-				+0.3
1,207,713	-				-1.1
1,207,766	-		LRK54_RS05600	0.13	-0.5
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1,209,389	+		LRK54_RS05610	0.22	-0.6
1,209,389	+		LRK54_RS05610	0.22	+0.7
1,209,389	+		LRK54_RS05610	0.22	-0.8
1,209,390	-		LRK54_RS05610	0.22	+0.6
1,209,390	-		LRK54_RS05610	0.22	-1.7
1,209,390	-		LRK54_RS05610	0.22	-1.3
1,209,390	-		LRK54_RS05610	0.22	-0.1
1,209,390	-		LRK54_RS05610	0.22	-1.3
1,209,390	-		LRK54_RS05610	0.22	-1.6
1,209,390	-		LRK54_RS05610	0.22	-3.8
1,209,390	-		LRK54_RS05610	0.22	-1.7
1,209,390	-		LRK54_RS05610	0.22	-1.6
1,209,398	+		LRK54_RS05610	0.24	-1.3
1,209,398	+		LRK54_RS05610	0.24	-2.1
1,209,399	-		LRK54_RS05610	0.25	+0.3
1,209,399	-		LRK54_RS05610	0.25	-2.0
1,209,399	-		LRK54_RS05610	0.25	-1.6
1,209,399	-		LRK54_RS05610	0.25	+0.0
1,209,399	-		LRK54_RS05610	0.25	+1.7
1,209,437	+		LRK54_RS05610	0.34	-2.0
1,209,437	+		LRK54_RS05610	0.34	-2.6
1,209,437	+		LRK54_RS05610	0.34	+0.7
1,209,438	-		LRK54_RS05610	0.34	-2.3
1,209,438	-		LRK54_RS05610	0.34	-2.6
1,209,438	-		LRK54_RS05610	0.34	-1.6
1,209,450	-		LRK54_RS05610	0.37	-2.2
1,209,450	-		LRK54_RS05610	0.37	+0.2
1,209,450	-		LRK54_RS05610	0.37	-2.3
1,209,549	+		LRK54_RS05610	0.62	+1.7
1,209,550	-		LRK54_RS05610	0.62	-1.1
1,209,550	-		LRK54_RS05610	0.62	-1.1
1,209,550	-		LRK54_RS05610	0.62	-2.1
1,209,550	-		LRK54_RS05610	0.62	-1.0
1,209,550	-		LRK54_RS05610	0.62	-2.6
1,209,557	+		LRK54_RS05610	0.64	-0.6
1,209,557	+		LRK54_RS05610	0.64	-3.7
1,209,557	+		LRK54_RS05610	0.64	-1.7
1,209,557	+		LRK54_RS05610	0.64	-0.8
1,209,558	-		LRK54_RS05610	0.64	+1.0
1,209,558	-		LRK54_RS05610	0.64	-1.5
1,209,558	-		LRK54_RS05610	0.64	-0.6
1,209,558	-		LRK54_RS05610	0.64	-0.6
1,209,579	+		LRK54_RS05610	0.69	-1.4
1,209,580	-		LRK54_RS05610	0.69	+0.2
1,209,580	-		LRK54_RS05610	0.69	-1.5
1,209,583	+		LRK54_RS05610	0.70	-0.6
1,209,583	+		LRK54_RS05610	0.70	-1.1
1,209,583	+		LRK54_RS05610	0.70	-2.3
1,209,583	+		LRK54_RS05610	0.70	-2.2
1,209,583	+		LRK54_RS05610	0.70	-2.1
1,209,584	-		LRK54_RS05610	0.70	-1.5
1,209,584	-		LRK54_RS05610	0.70	-1.3
1,209,584	-		LRK54_RS05610	0.70	-2.3
1,209,597	-		LRK54_RS05610	0.74	-2.6
1,209,597	-		LRK54_RS05610	0.74	-1.1
1,209,605	-		LRK54_RS05610	0.76	-1.1