Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13490

Experiment: Xylan from corncob 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corncob 2.5 mg/ml (C)
1,466,414	+		HMPREF1058_RS13495	0.27	-0.3
1,466,415	-		HMPREF1058_RS13495	0.27	+0.2
1,466,415	-		HMPREF1058_RS13495	0.27	+0.6
1,466,482	+		HMPREF1058_RS13495	0.33	+1.0
1,466,485	-		HMPREF1058_RS13495	0.34	-0.8
1,466,492	-		HMPREF1058_RS13495	0.34	+0.5
1,466,516	-		HMPREF1058_RS13495	0.37	+0.7
1,466,552	+		HMPREF1058_RS13495	0.40	-0.4
1,466,571	+		HMPREF1058_RS13495	0.42	-1.6
1,466,598	+		HMPREF1058_RS13495	0.45	-0.4
1,466,600	+		HMPREF1058_RS13495	0.45	+0.3
1,466,600	+		HMPREF1058_RS13495	0.45	+0.1
1,466,603	+		HMPREF1058_RS13495	0.45	-0.2
1,466,620	-		HMPREF1058_RS13495	0.47	-1.6
1,466,646	+		HMPREF1058_RS13495	0.50	-1.6
1,466,647	-		HMPREF1058_RS13495	0.50	-0.4
1,466,807	+		HMPREF1058_RS13495	0.66	-1.1
1,466,961	+		HMPREF1058_RS13495	0.81	+0.2
1,466,998	-		HMPREF1058_RS13495	0.85	+1.1
1,467,076	-				-1.0
1,467,077	+				+0.3
1,467,077	+				-0.2
1,467,078	-				-1.8
1,467,078	-				-0.1
1,467,099	+				-1.7
1,467,150	+				-0.1
1,467,164	-				-0.5
1,467,172	+				-0.6
1,467,215	+				-1.4
1,467,216	-				-1.0
1,467,217	+				-2.0
1,467,218	-				+0.0
1,467,248	+				-0.2
1,467,249	-				+1.2
1,467,262	-				+0.0
1,467,263	+				-0.6
1,467,263	+				-0.2
1,467,273	+				-0.6
1,467,274	-				+1.7
1,467,274	-				+0.7
1,467,297	+				+0.4
1,467,299	+				+0.5
1,467,315	+				+0.8
1,467,316	-				-1.1
1,467,316	-				+0.7
1,467,319	+				+0.4
1,467,319	+				+0.2
1,467,319	+				+0.0
1,467,320	-				-0.2
1,467,324	+				+0.1
1,467,422	+				+1.6
1,467,423	-				+0.5
1,467,535	+		HMPREF1058_RS13490	0.14	-0.1
1,467,539	+		HMPREF1058_RS13490	0.14	-1.0
1,467,600	-		HMPREF1058_RS13490	0.18	-0.8
1,467,618	+		HMPREF1058_RS13490	0.20	-0.1
1,467,619	-		HMPREF1058_RS13490	0.20	-0.9
1,467,644	+		HMPREF1058_RS13490	0.21	+0.0
1,467,644	+		HMPREF1058_RS13490	0.21	+0.5
1,467,647	+		HMPREF1058_RS13490	0.22	+1.2
1,467,701	+		HMPREF1058_RS13490	0.25	-1.9
1,467,824	-		HMPREF1058_RS13490	0.34	-1.0
1,467,891	+		HMPREF1058_RS13490	0.39	-1.5
1,467,892	-		HMPREF1058_RS13490	0.39	-0.3
1,467,896	+		HMPREF1058_RS13490	0.39	-0.5
1,467,904	-		HMPREF1058_RS13490	0.40	+0.3
1,467,908	-		HMPREF1058_RS13490	0.40	-0.6
1,467,926	+		HMPREF1058_RS13490	0.41	-0.7
1,467,931	-		HMPREF1058_RS13490	0.41	-0.3
1,467,948	-		HMPREF1058_RS13490	0.43	-0.8
1,468,002	+		HMPREF1058_RS13490	0.46	-1.6
1,468,116	+		HMPREF1058_RS13490	0.54	-0.0
1,468,207	-		HMPREF1058_RS13490	0.61	+0.7
1,468,207	-		HMPREF1058_RS13490	0.61	+0.7
1,468,355	+		HMPREF1058_RS13490	0.71	+2.4
1,468,418	-		HMPREF1058_RS13490	0.75	+0.2
1,468,439	+		HMPREF1058_RS13490	0.77	-1.1
1,468,442	-		HMPREF1058_RS13490	0.77	-1.0
1,468,442	-		HMPREF1058_RS13490	0.77	-1.0
1,468,442	-		HMPREF1058_RS13490	0.77	+0.6
1,468,473	+		HMPREF1058_RS13490	0.79	+0.6
1,468,473	+		HMPREF1058_RS13490	0.79	-1.8
1,468,482	+		HMPREF1058_RS13490	0.80	+0.1
1,468,515	-		HMPREF1058_RS13490	0.82	-0.2
1,468,518	-		HMPREF1058_RS13490	0.82	-0.5
1,468,518	-		HMPREF1058_RS13490	0.82	+1.4
1,468,587	-		HMPREF1058_RS13490	0.87	-1.4
1,468,592	+		HMPREF1058_RS13490	0.87	-0.8
1,468,632	+				-0.4
1,468,633	-				-0.3
1,468,634	+				-0.3
1,468,673	+				-2.0
1,468,673	+				-0.3
1,468,674	-				+0.5
1,468,704	+				-0.5
1,468,705	-				+0.1
1,468,762	-				-0.1
1,468,993	-				-0.1
1,469,040	+				-2.6
1,469,086	+				-0.4
1,469,087	-				-0.6
1,469,088	+				-0.8
1,469,156	-				-2.5
1,469,156	-				-0.0
1,469,195	-				-0.2
1,469,234	-				-1.7
1,469,263	+				+0.1
1,469,266	+				+0.0
1,469,267	-				-0.8
1,469,267	-				-0.1
1,469,294	-				-1.6
1,469,308	+				+0.1
1,469,346	+				+0.3
1,469,347	-				-1.1
1,469,427	-		HMPREF1058_RS13485	0.11	+0.1
1,469,427	-		HMPREF1058_RS13485	0.11	+0.0
1,469,431	-		HMPREF1058_RS13485	0.11	-0.7
1,469,431	-		HMPREF1058_RS13485	0.11	+1.1
1,469,583	-		HMPREF1058_RS13485	0.15	+0.3
1,469,583	-		HMPREF1058_RS13485	0.15	+1.0
1,469,601	+		HMPREF1058_RS13485	0.15	-0.8
1,469,602	-		HMPREF1058_RS13485	0.15	-1.0
1,469,698	+		HMPREF1058_RS13485	0.17	+0.8
1,469,718	-		HMPREF1058_RS13485	0.18	+0.1