Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13475

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
3,018,046	+		LRK54_RS13465	0.62	+0.6
3,018,046	+		LRK54_RS13465	0.62	-1.2
3,018,046	+		LRK54_RS13465	0.62	-0.6
3,018,046	+		LRK54_RS13465	0.62	-0.3
3,018,046	+		LRK54_RS13465	0.62	+0.3
3,018,046	+		LRK54_RS13465	0.62	+0.5
3,018,046	+		LRK54_RS13465	0.62	+0.3
3,018,046	+		LRK54_RS13465	0.62	+2.6
3,018,047	-		LRK54_RS13465	0.62	-2.4
3,018,047	-		LRK54_RS13465	0.62	+0.4
3,018,047	-		LRK54_RS13465	0.62	-0.5
3,018,047	-		LRK54_RS13465	0.62	-1.8
3,018,047	-		LRK54_RS13465	0.62	-1.1
3,018,067	+		LRK54_RS13465	0.64	-1.4
3,018,067	+		LRK54_RS13465	0.64	-1.4
3,018,067	+		LRK54_RS13465	0.64	+1.2
3,018,067	+		LRK54_RS13465	0.64	+0.2
3,018,067	+		LRK54_RS13465	0.64	-1.3
3,018,068	-		LRK54_RS13465	0.64	-0.8
3,018,068	-		LRK54_RS13465	0.64	-0.7
3,018,068	-		LRK54_RS13465	0.64	+0.2
3,018,068	-		LRK54_RS13465	0.64	-0.9
3,018,068	-		LRK54_RS13465	0.64	+1.2
3,018,085	+		LRK54_RS13465	0.65	+3.2
3,018,086	-		LRK54_RS13465	0.65	-0.0
3,018,086	-		LRK54_RS13465	0.65	-0.2
3,018,086	-		LRK54_RS13465	0.65	+4.7
3,018,086	-		LRK54_RS13465	0.65	-0.7
3,018,086	-		LRK54_RS13465	0.65	-1.3
3,018,466	+				-0.4
3,018,466	+				-1.7
3,018,466	+				-0.9
3,018,466	+				-1.1
3,018,466	+				-1.8
3,018,466	+				+1.0
3,018,467	-				+1.7
3,018,467	-				+0.9
3,018,467	-				-0.2
3,018,467	-				-1.9
3,018,526	+				-0.2
3,018,526	+				+0.6
3,018,526	+				-0.4
3,018,526	+				-0.6
3,018,526	+				+0.8
3,018,526	+				+0.2
3,018,527	-				-0.2
3,018,527	-				+0.6
3,018,527	-				-0.7
3,018,527	-				-0.7
3,018,527	-				+0.3
3,018,552	+				-0.8
3,018,552	+				-0.8
3,018,552	+				-0.1
3,018,553	-				-0.3
3,018,553	-				-0.8
3,018,571	+				+0.8
3,018,571	+				-0.3
3,018,571	+				+0.2
3,018,571	+				+1.2
3,018,572	-				+1.7
3,018,613	+				-1.3
3,018,613	+				-0.8
3,018,614	-				+0.3
3,018,614	-				-1.7
3,018,847	+		LRK54_RS13470	0.64	+1.2
3,018,847	+		LRK54_RS13470	0.64	+2.2
3,018,847	+		LRK54_RS13470	0.64	+1.2
3,018,848	-		LRK54_RS13470	0.64	-1.3
3,018,848	-		LRK54_RS13470	0.64	-0.1
3,018,848	-		LRK54_RS13470	0.64	+0.4
3,018,848	-		LRK54_RS13470	0.64	+0.5
3,018,848	-		LRK54_RS13470	0.64	+0.2
3,018,853	+		LRK54_RS13470	0.65	+0.6
3,018,853	+		LRK54_RS13470	0.65	-1.5
3,018,853	+		LRK54_RS13470	0.65	-1.2
3,018,853	+		LRK54_RS13470	0.65	-0.0
3,018,853	+		LRK54_RS13470	0.65	-0.6
3,018,853	+		LRK54_RS13470	0.65	-1.0
3,018,853	+		LRK54_RS13470	0.65	-1.2
3,018,853	+		LRK54_RS13470	0.65	+0.7
3,018,853	+		LRK54_RS13470	0.65	-0.8
3,018,853	+		LRK54_RS13470	0.65	-1.0
3,018,854	-		LRK54_RS13470	0.66	+0.3
3,018,854	-		LRK54_RS13470	0.66	+2.2
3,018,854	-		LRK54_RS13470	0.66	-1.5
3,018,854	-		LRK54_RS13470	0.66	+1.2
3,018,854	-		LRK54_RS13470	0.66	+3.2
3,018,854	-		LRK54_RS13470	0.66	+0.9
3,018,854	-		LRK54_RS13470	0.66	+0.3
3,018,854	-		LRK54_RS13470	0.66	-0.5
3,018,854	-		LRK54_RS13470	0.66	+0.0
3,019,164	+		LRK54_RS13475	0.60	-1.2
3,019,164	+		LRK54_RS13475	0.60	-0.9
3,019,165	-		LRK54_RS13475	0.61	-1.0
3,019,165	-		LRK54_RS13475	0.61	-2.7
3,019,165	-		LRK54_RS13475	0.61	-0.5
3,019,165	-		LRK54_RS13475	0.61	-2.9
3,019,260	+				-0.9
3,019,261	-				-0.6
3,019,492	+				-0.3
3,019,492	+				+0.3
3,019,743	+		LRK54_RS13480	0.48	+0.4
3,019,743	+		LRK54_RS13480	0.48	-1.7
3,019,743	+		LRK54_RS13480	0.48	-0.8
3,019,743	+		LRK54_RS13480	0.48	-0.4
3,019,743	+		LRK54_RS13480	0.48	-0.1
3,019,743	+		LRK54_RS13480	0.48	+0.3
3,019,743	+		LRK54_RS13480	0.48	+1.6
3,019,743	+		LRK54_RS13480	0.48	+2.4
3,019,743	+		LRK54_RS13480	0.48	-0.3
3,019,744	-		LRK54_RS13480	0.48	-1.6
3,019,744	-		LRK54_RS13480	0.48	+0.5
3,019,744	-		LRK54_RS13480	0.48	+0.3
3,019,744	-		LRK54_RS13480	0.48	+1.2
3,019,744	-		LRK54_RS13480	0.48	-0.8
3,019,744	-		LRK54_RS13480	0.48	+0.3
3,019,744	-		LRK54_RS13480	0.48	-1.7
3,019,744	-		LRK54_RS13480	0.48	-0.6
3,019,744	-		LRK54_RS13480	0.48	-0.4
3,019,744	-		LRK54_RS13480	0.48	-0.9
3,019,744	-		LRK54_RS13480	0.48	-0.8
3,020,182	+				+0.1
3,020,182	+				+0.1
3,020,183	-				-1.1
3,020,206	+				-0.3
3,020,206	+				-1.2
3,020,206	+				+0.3
3,020,206	+				-0.1
3,020,207	-				-1.6
3,020,207	-				-1.5
3,020,207	-				-1.4
3,020,219	+				-0.1
3,020,219	+				-1.6
3,020,219	+				+0.9
3,020,219	+				-0.9
3,020,220	-				-0.6
3,020,220	-				-0.2