Experiment: a-Cyclodextrin 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16500 and HMPREF1058_RS16495 are separated by 23 nucleotides HMPREF1058_RS16495 and HMPREF1058_RS16490 are separated by 1 nucleotides HMPREF1058_RS16490 and HMPREF1058_RS16485 are separated by 174 nucleotides HMPREF1058_RS16485 and HMPREF1058_RS16480 are separated by 95 nucleotides
HMPREF1058_RS16500: HMPREF1058_RS16500 - OadG family protein, at 656,125 to 657,054
_RS16500
HMPREF1058_RS16495: HMPREF1058_RS16495 - biotin/lipoyl-binding protein, at 657,078 to 657,509
_RS16495
HMPREF1058_RS16490: HMPREF1058_RS16490 - sodium ion-translocating decarboxylase subunit beta, at 657,511 to 658,671
_RS16490
HMPREF1058_RS16485: HMPREF1058_RS16485 - cyclomaltodextrinase C-terminal domain-containing protein, at 658,846 to 659,094
_RS16485
HMPREF1058_RS16480: HMPREF1058_RS16480 - SDR family oxidoreductase, at 659,190 to 659,948
_RS16480
Position (kb) 657
658
659 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.641 kb on + strand, within HMPREF1058_RS16500 at 656.642 kb on - strand, within HMPREF1058_RS16500 at 656.754 kb on - strand, within HMPREF1058_RS16500 at 656.840 kb on + strand, within HMPREF1058_RS16500 at 656.948 kb on + strand, within HMPREF1058_RS16500 at 656.995 kb on - strand at 656.999 kb on - strand at 656.999 kb on - strand at 657.052 kb on + strand at 657.113 kb on - strand at 657.134 kb on + strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.137 kb on - strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.263 kb on + strand, within HMPREF1058_RS16495 at 657.347 kb on - strand, within HMPREF1058_RS16495 at 657.457 kb on + strand, within HMPREF1058_RS16495 at 657.461 kb on + strand, within HMPREF1058_RS16495 at 657.508 kb on - strand at 657.546 kb on - strand at 657.546 kb on - strand at 657.562 kb on + strand at 657.562 kb on + strand at 657.563 kb on - strand at 657.564 kb on + strand at 657.565 kb on - strand at 657.595 kb on - strand at 657.600 kb on - strand at 657.612 kb on - strand at 657.618 kb on - strand at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.627 kb on - strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.628 kb on + strand, within HMPREF1058_RS16490 at 657.629 kb on - strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.699 kb on + strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.740 kb on - strand, within HMPREF1058_RS16490 at 657.767 kb on + strand, within HMPREF1058_RS16490 at 657.770 kb on - strand, within HMPREF1058_RS16490 at 657.781 kb on - strand, within HMPREF1058_RS16490 at 657.804 kb on + strand, within HMPREF1058_RS16490 at 657.812 kb on + strand, within HMPREF1058_RS16490 at 657.908 kb on - strand, within HMPREF1058_RS16490 at 658.011 kb on - strand, within HMPREF1058_RS16490 at 658.048 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand, within HMPREF1058_RS16490 at 658.054 kb on + strand at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.055 kb on - strand, within HMPREF1058_RS16490 at 658.086 kb on + strand, within HMPREF1058_RS16490 at 658.086 kb on + strand, within HMPREF1058_RS16490 at 658.166 kb on + strand, within HMPREF1058_RS16490 at 658.194 kb on + strand, within HMPREF1058_RS16490 at 658.195 kb on - strand, within HMPREF1058_RS16490 at 658.249 kb on - strand, within HMPREF1058_RS16490 at 658.329 kb on - strand, within HMPREF1058_RS16490 at 658.332 kb on - strand at 658.518 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.543 kb on - strand, within HMPREF1058_RS16490 at 658.583 kb on - strand at 658.669 kb on + strand at 658.707 kb on + strand at 658.758 kb on + strand at 658.778 kb on + strand at 658.779 kb on - strand at 658.786 kb on + strand at 658.808 kb on - strand at 658.832 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.863 kb on + strand at 658.868 kb on - strand at 658.889 kb on + strand, within HMPREF1058_RS16485 at 658.890 kb on - strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.891 kb on + strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.892 kb on - strand, within HMPREF1058_RS16485 at 658.893 kb on + strand, within HMPREF1058_RS16485 at 658.893 kb on + strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.894 kb on - strand, within HMPREF1058_RS16485 at 658.897 kb on + strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.898 kb on - strand, within HMPREF1058_RS16485 at 658.908 kb on + strand, within HMPREF1058_RS16485 at 659.019 kb on + strand, within HMPREF1058_RS16485 at 659.110 kb on - strand at 659.117 kb on + strand at 659.117 kb on + strand at 659.118 kb on - strand at 659.167 kb on - strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.170 kb on + strand at 659.171 kb on - strand at 659.330 kb on + strand, within HMPREF1058_RS16480 at 659.330 kb on + strand, within HMPREF1058_RS16480 at 659.332 kb on + strand, within HMPREF1058_RS16480 at 659.333 kb on - strand, within HMPREF1058_RS16480 at 659.334 kb on + strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.335 kb on - strand, within HMPREF1058_RS16480 at 659.408 kb on + strand, within HMPREF1058_RS16480 at 659.528 kb on + strand, within HMPREF1058_RS16480 at 659.540 kb on + strand, within HMPREF1058_RS16480 at 659.541 kb on - strand, within HMPREF1058_RS16480 at 659.543 kb on + strand, within HMPREF1058_RS16480 at 659.544 kb on - strand, within HMPREF1058_RS16480 at 659.544 kb on - strand, within HMPREF1058_RS16480 at 659.546 kb on + strand, within HMPREF1058_RS16480 at 659.546 kb on + strand, within HMPREF1058_RS16480 at 659.547 kb on - strand, within HMPREF1058_RS16480 at 659.558 kb on + strand, within HMPREF1058_RS16480 at 659.558 kb on + strand, within HMPREF1058_RS16480 at 659.616 kb on - strand, within HMPREF1058_RS16480 at 659.622 kb on + strand, within HMPREF1058_RS16480 at 659.623 kb on - strand, within HMPREF1058_RS16480 at 659.623 kb on - strand, within HMPREF1058_RS16480
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 2.5 mg/ml (C) remove 656,641 + HMPREF1058_RS16500 0.55 -0.8 656,641 + HMPREF1058_RS16500 0.55 +0.4 656,642 - HMPREF1058_RS16500 0.56 -3.4 656,754 - HMPREF1058_RS16500 0.68 -1.6 656,840 + HMPREF1058_RS16500 0.77 -2.4 656,948 + HMPREF1058_RS16500 0.88 +1.2 656,995 - +0.4 656,999 - +1.8 656,999 - -0.2 657,052 + -1.6 657,113 - -0.6 657,134 + HMPREF1058_RS16495 0.13 -0.4 657,137 - HMPREF1058_RS16495 0.14 -1.3 657,137 - HMPREF1058_RS16495 0.14 -0.4 657,263 + HMPREF1058_RS16495 0.43 -2.4 657,263 + HMPREF1058_RS16495 0.43 -2.2 657,347 - HMPREF1058_RS16495 0.62 +1.8 657,457 + HMPREF1058_RS16495 0.88 -0.4 657,461 + HMPREF1058_RS16495 0.89 -0.0 657,508 - -3.5 657,546 - -1.1 657,546 - -2.5 657,562 + -3.2 657,562 + +0.0 657,563 - -2.3 657,564 + -3.1 657,565 - -3.3 657,595 - -3.4 657,600 - -2.1 657,612 - -1.4 657,618 - -2.0 657,627 - HMPREF1058_RS16490 0.10 -2.3 657,627 - HMPREF1058_RS16490 0.10 -3.0 657,628 + HMPREF1058_RS16490 0.10 -2.8 657,628 + HMPREF1058_RS16490 0.10 -0.8 657,629 - HMPREF1058_RS16490 0.10 -2.4 657,699 + HMPREF1058_RS16490 0.16 -2.0 657,699 + HMPREF1058_RS16490 0.16 -3.6 657,740 - HMPREF1058_RS16490 0.20 -3.6 657,740 - HMPREF1058_RS16490 0.20 -3.5 657,740 - HMPREF1058_RS16490 0.20 -2.0 657,740 - HMPREF1058_RS16490 0.20 -0.2 657,767 + HMPREF1058_RS16490 0.22 -2.6 657,770 - HMPREF1058_RS16490 0.22 -2.3 657,781 - HMPREF1058_RS16490 0.23 -0.4 657,804 + HMPREF1058_RS16490 0.25 +0.1 657,812 + HMPREF1058_RS16490 0.26 -3.3 657,908 - HMPREF1058_RS16490 0.34 -3.0 658,011 - HMPREF1058_RS16490 0.43 -1.3 658,048 + HMPREF1058_RS16490 0.46 -0.7 658,054 + HMPREF1058_RS16490 0.47 -0.9 658,054 + -0.2 658,055 - HMPREF1058_RS16490 0.47 -1.9 658,055 - HMPREF1058_RS16490 0.47 -0.5 658,055 - HMPREF1058_RS16490 0.47 -0.8 658,055 - HMPREF1058_RS16490 0.47 -2.7 658,055 - HMPREF1058_RS16490 0.47 -1.7 658,055 - HMPREF1058_RS16490 0.47 -1.9 658,086 + HMPREF1058_RS16490 0.50 -3.4 658,086 + HMPREF1058_RS16490 0.50 -3.6 658,166 + HMPREF1058_RS16490 0.56 -3.0 658,194 + HMPREF1058_RS16490 0.59 -0.8 658,195 - HMPREF1058_RS16490 0.59 -1.2 658,249 - HMPREF1058_RS16490 0.64 -4.0 658,329 - HMPREF1058_RS16490 0.70 -0.8 658,332 - -0.0 658,518 - HMPREF1058_RS16490 0.87 -1.5 658,543 - HMPREF1058_RS16490 0.89 -3.9 658,543 - HMPREF1058_RS16490 0.89 -1.3 658,543 - HMPREF1058_RS16490 0.89 -0.2 658,583 - -3.1 658,669 + -0.7 658,707 + -2.1 658,758 + +0.3 658,778 + +1.3 658,779 - +0.1 658,786 + +0.7 658,808 - -1.1 658,832 + +1.3 658,863 + +0.5 658,863 + +0.9 658,863 + +1.2 658,863 + +0.8 658,863 + +1.4 658,868 - +3.5 658,889 + HMPREF1058_RS16485 0.17 +1.2 658,890 - HMPREF1058_RS16485 0.18 +1.3 658,891 + HMPREF1058_RS16485 0.18 +0.8 658,891 + HMPREF1058_RS16485 0.18 +0.8 658,891 + HMPREF1058_RS16485 0.18 +1.4 658,892 - HMPREF1058_RS16485 0.18 -0.2 658,892 - HMPREF1058_RS16485 0.18 -2.3 658,892 - HMPREF1058_RS16485 0.18 +0.6 658,892 - HMPREF1058_RS16485 0.18 -1.4 658,893 + HMPREF1058_RS16485 0.19 +1.1 658,893 + HMPREF1058_RS16485 0.19 +1.1 658,894 - HMPREF1058_RS16485 0.19 -0.0 658,894 - HMPREF1058_RS16485 0.19 -1.1 658,894 - HMPREF1058_RS16485 0.19 -1.0 658,894 - HMPREF1058_RS16485 0.19 +1.8 658,894 - HMPREF1058_RS16485 0.19 +0.1 658,897 + HMPREF1058_RS16485 0.20 +0.8 658,898 - HMPREF1058_RS16485 0.21 -1.6 658,898 - HMPREF1058_RS16485 0.21 -0.7 658,898 - HMPREF1058_RS16485 0.21 -1.0 658,898 - HMPREF1058_RS16485 0.21 -2.2 658,908 + HMPREF1058_RS16485 0.25 +0.4 659,019 + HMPREF1058_RS16485 0.69 +0.6 659,110 - +0.4 659,117 + +0.9 659,117 + +1.6 659,118 - +1.4 659,167 - -0.0 659,170 + +0.7 659,170 + +0.8 659,170 + +1.4 659,170 + +1.3 659,171 - -0.3 659,330 + HMPREF1058_RS16480 0.18 -2.4 659,330 + HMPREF1058_RS16480 0.18 +0.2 659,332 + HMPREF1058_RS16480 0.19 -2.3 659,333 - HMPREF1058_RS16480 0.19 +0.6 659,334 + HMPREF1058_RS16480 0.19 -0.9 659,335 - HMPREF1058_RS16480 0.19 +0.3 659,335 - HMPREF1058_RS16480 0.19 -0.1 659,335 - HMPREF1058_RS16480 0.19 -0.6 659,335 - HMPREF1058_RS16480 0.19 -0.0 659,408 + HMPREF1058_RS16480 0.29 -0.4 659,528 + HMPREF1058_RS16480 0.45 -1.2 659,540 + HMPREF1058_RS16480 0.46 +0.0 659,541 - HMPREF1058_RS16480 0.46 -1.7 659,543 + HMPREF1058_RS16480 0.47 +0.2 659,544 - HMPREF1058_RS16480 0.47 +0.4 659,544 - HMPREF1058_RS16480 0.47 +2.8 659,546 + HMPREF1058_RS16480 0.47 -0.3 659,546 + HMPREF1058_RS16480 0.47 -0.8 659,547 - HMPREF1058_RS16480 0.47 +0.4 659,558 + HMPREF1058_RS16480 0.48 +0.2 659,558 + HMPREF1058_RS16480 0.48 +0.4 659,616 - HMPREF1058_RS16480 0.56 +1.4 659,622 + HMPREF1058_RS16480 0.57 -0.6 659,623 - HMPREF1058_RS16480 0.57 +1.0 659,623 - HMPREF1058_RS16480 0.57 -0.2
Or see this region's nucleotide sequence