Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14415

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
3,205,581	+		LRK54_RS14405	0.48	-1.2
3,205,582	-		LRK54_RS14405	0.48	-0.6
3,205,582	-		LRK54_RS14405	0.48	-1.4
3,205,644	+		LRK54_RS14405	0.54	-0.3
3,205,645	-		LRK54_RS14405	0.54	-0.1
3,205,645	-		LRK54_RS14405	0.54	+1.1
3,205,645	-		LRK54_RS14405	0.54	-0.6
3,205,645	-		LRK54_RS14405	0.54	+0.6
3,205,785	+		LRK54_RS14405	0.66	+1.8
3,205,785	+		LRK54_RS14405	0.66	+2.7
3,205,785	+		LRK54_RS14405	0.66	+0.6
3,205,785	+		LRK54_RS14405	0.66	+0.6
3,205,785	+		LRK54_RS14405	0.66	-1.0
3,205,785	+		LRK54_RS14405	0.66	+1.3
3,205,785	+		LRK54_RS14405	0.66	-0.2
3,205,785	+		LRK54_RS14405	0.66	-0.7
3,205,785	+		LRK54_RS14405	0.66	+1.3
3,205,785	+		LRK54_RS14405	0.66	+0.6
3,205,786	-		LRK54_RS14405	0.66	+0.3
3,205,786	-		LRK54_RS14405	0.66	-1.2
3,205,786	-		LRK54_RS14405	0.66	-0.3
3,205,786	-		LRK54_RS14405	0.66	+0.3
3,205,786	-		LRK54_RS14405	0.66	-1.7
3,205,786	-		LRK54_RS14405	0.66	-0.4
3,205,836	+		LRK54_RS14405	0.71	-0.4
3,205,836	+		LRK54_RS14405	0.71	-0.2
3,205,836	+		LRK54_RS14405	0.71	-0.5
3,205,836	+		LRK54_RS14405	0.71	+0.6
3,205,836	+		LRK54_RS14405	0.71	-0.6
3,205,837	-		LRK54_RS14405	0.71	-0.9
3,205,837	-		LRK54_RS14405	0.71	-0.1
3,205,837	-		LRK54_RS14405	0.71	+0.3
3,205,837	-		LRK54_RS14405	0.71	-1.7
3,205,837	-		LRK54_RS14405	0.71	-1.7
3,206,007	+		LRK54_RS14405	0.86	-0.8
3,206,007	+		LRK54_RS14405	0.86	-0.1
3,206,007	+		LRK54_RS14405	0.86	-0.8
3,206,007	+		LRK54_RS14405	0.86	+0.8
3,206,007	+		LRK54_RS14405	0.86	-1.4
3,206,007	+		LRK54_RS14405	0.86	-0.2
3,206,007	+		LRK54_RS14405	0.86	-0.2
3,206,007	+		LRK54_RS14405	0.86	+1.1
3,206,007	+		LRK54_RS14405	0.86	-1.2
3,206,007	+		LRK54_RS14405	0.86	-1.2
3,206,007	+		LRK54_RS14405	0.86	-1.3
3,206,007	+		LRK54_RS14405	0.86	+1.9
3,206,007	+		LRK54_RS14405	0.86	+0.2
3,206,007	+		LRK54_RS14405	0.86	-0.5
3,206,007	+		LRK54_RS14405	0.86	+0.3
3,206,007	+		LRK54_RS14405	0.86	+0.2
3,206,007	+		LRK54_RS14405	0.86	+0.6
3,206,007	+		LRK54_RS14405	0.86	-1.7
3,206,007	+		LRK54_RS14405	0.86	+0.4
3,206,007	+		LRK54_RS14405	0.86	+0.8
3,206,007	+		LRK54_RS14405	0.86	+0.9
3,206,007	+		LRK54_RS14405	0.86	-2.5
3,206,008	-		LRK54_RS14405	0.86	-1.7
3,206,008	-		LRK54_RS14405	0.86	-0.3
3,206,008	-		LRK54_RS14405	0.86	-0.0
3,206,008	-		LRK54_RS14405	0.86	+1.8
3,206,008	-		LRK54_RS14405	0.86	-0.3
3,206,008	-		LRK54_RS14405	0.86	+1.9
3,206,008	-		LRK54_RS14405	0.86	+1.1
3,206,008	-		LRK54_RS14405	0.86	+0.9
3,206,008	-		LRK54_RS14405	0.86	+1.5
3,206,008	-		LRK54_RS14405	0.86	+0.1
3,206,008	-		LRK54_RS14405	0.86	+0.3
3,206,008	-		LRK54_RS14405	0.86	-0.0
3,206,008	-		LRK54_RS14405	0.86	+0.4
3,206,052	+				+0.1
3,206,052	+				-0.2
3,206,053	-				+0.9
3,206,053	-				-0.5
3,206,053	-				+0.0
3,206,053	-				-0.6
3,206,053	-				-0.8
3,206,053	-				+0.6
3,206,053	-				+0.6
3,206,237	+		LRK54_RS14410	0.13	-1.9
3,206,237	+		LRK54_RS14410	0.13	-1.7
3,206,237	+		LRK54_RS14410	0.13	-0.8
3,206,237	+		LRK54_RS14410	0.13	-1.3
3,206,237	+		LRK54_RS14410	0.13	-1.3
3,206,237	+		LRK54_RS14410	0.13	-1.8
3,206,237	+		LRK54_RS14410	0.13	+1.9
3,206,237	+		LRK54_RS14410	0.13	+1.9
3,206,237	+		LRK54_RS14410	0.13	-0.9
3,206,237	+		LRK54_RS14410	0.13	-0.4
3,206,237	+		LRK54_RS14410	0.13	-0.4
3,206,237	+		LRK54_RS14410	0.13	+0.3
3,206,237	+		LRK54_RS14410	0.13	-0.2
3,206,237	+		LRK54_RS14410	0.13	+0.9
3,206,237	+		LRK54_RS14410	0.13	+0.3
3,206,237	+		LRK54_RS14410	0.13	+0.6
3,206,237	+		LRK54_RS14410	0.13	-2.8
3,206,237	+		LRK54_RS14410	0.13	+1.9
3,206,237	+		LRK54_RS14410	0.13	+1.3
3,206,237	+		LRK54_RS14410	0.13	+0.1
3,206,237	+		LRK54_RS14410	0.13	-2.5
3,206,238	-		LRK54_RS14410	0.13	+0.5
3,206,238	-		LRK54_RS14410	0.13	-1.2
3,206,238	-		LRK54_RS14410	0.13	-0.4
3,206,238	-		LRK54_RS14410	0.13	-0.3
3,206,238	-		LRK54_RS14410	0.13	-1.7
3,206,238	-		LRK54_RS14410	0.13	-0.2
3,206,238	-		LRK54_RS14410	0.13	+0.1
3,206,238	-		LRK54_RS14410	0.13	-0.4
3,206,238	-		LRK54_RS14410	0.13	-0.5
3,206,238	-		LRK54_RS14410	0.13	+0.5
3,206,238	-		LRK54_RS14410	0.13	-0.1
3,206,238	-		LRK54_RS14410	0.13	-0.5
3,206,238	-		LRK54_RS14410	0.13	+1.1
3,206,238	-		LRK54_RS14410	0.13	+0.9
3,206,238	-		LRK54_RS14410	0.13	-0.2
3,206,238	-		LRK54_RS14410	0.13	-0.2
3,206,238	-		LRK54_RS14410	0.13	+1.3
3,206,238	-		LRK54_RS14410	0.13	-0.3
3,206,238	-		LRK54_RS14410	0.13	+0.6
3,206,238	-		LRK54_RS14410	0.13	-1.9
3,206,263	+		LRK54_RS14410	0.20	-1.1
3,206,264	-		LRK54_RS14410	0.21	-1.8
3,206,489	+		LRK54_RS14410	0.87	+0.3
3,206,489	+		LRK54_RS14410	0.87	-0.2
3,206,489	+		LRK54_RS14410	0.87	-2.0
3,206,489	+		LRK54_RS14410	0.87	-0.7
3,206,489	+		LRK54_RS14410	0.87	+0.2
3,206,489	+		LRK54_RS14410	0.87	-1.9
3,206,489	+		LRK54_RS14410	0.87	-0.8
3,206,489	+		LRK54_RS14410	0.87	-1.9
3,206,489	+		LRK54_RS14410	0.87	-0.2
3,206,489	+		LRK54_RS14410	0.87	-0.0
3,206,489	+		LRK54_RS14410	0.87	-1.0
3,206,490	-		LRK54_RS14410	0.87	-0.0
3,206,490	-		LRK54_RS14410	0.87	+0.3
3,206,490	-		LRK54_RS14410	0.87	-1.2
3,206,490	-		LRK54_RS14410	0.87	+2.9
3,206,490	-		LRK54_RS14410	0.87	-0.4
3,206,490	-		LRK54_RS14410	0.87	+0.2
3,206,490	-		LRK54_RS14410	0.87	-0.1
3,206,490	-		LRK54_RS14410	0.87	-1.4
3,206,490	-		LRK54_RS14410	0.87	+0.9
3,206,642	+		LRK54_RS14415	0.25	+0.6
3,206,642	+		LRK54_RS14415	0.25	+0.3
3,206,642	+		LRK54_RS14415	0.25	+0.7
3,206,642	+		LRK54_RS14415	0.25	-0.2
3,206,642	+		LRK54_RS14415	0.25	+12.1
3,206,642	+		LRK54_RS14415	0.25	+1.5
3,206,642	+		LRK54_RS14415	0.25	+0.6
3,206,642	+		LRK54_RS14415	0.25	+1.3
3,206,642	+		LRK54_RS14415	0.25	-1.0
3,206,642	+		LRK54_RS14415	0.25	+1.9
3,206,642	+		LRK54_RS14415	0.25	+1.3
3,206,642	+		LRK54_RS14415	0.25	+0.3
3,206,642	+		LRK54_RS14415	0.25	-0.2
3,206,642	+		LRK54_RS14415	0.25	+2.5
3,206,642	+		LRK54_RS14415	0.25	-0.6
3,206,642	+		LRK54_RS14415	0.25	+0.1
3,206,642	+		LRK54_RS14415	0.25	-0.1
3,206,642	+		LRK54_RS14415	0.25	-1.3
3,206,642	+		LRK54_RS14415	0.25	-0.1
3,206,642	+		LRK54_RS14415	0.25	-0.2
3,206,642	+		LRK54_RS14415	0.25	-1.5
3,206,643	-		LRK54_RS14415	0.25	-1.2
3,206,643	-		LRK54_RS14415	0.25	+1.6
3,206,643	-		LRK54_RS14415	0.25	+1.3
3,206,643	-		LRK54_RS14415	0.25	+1.8
3,206,643	-		LRK54_RS14415	0.25	+2.9
3,206,643	-		LRK54_RS14415	0.25	+0.8
3,206,643	-		LRK54_RS14415	0.25	+0.5
3,206,643	-		LRK54_RS14415	0.25	-0.6
3,206,643	-		LRK54_RS14415	0.25	-0.9
3,206,643	-		LRK54_RS14415	0.25	-0.8
3,206,643	-		LRK54_RS14415	0.25	-3.4
3,206,643	-		LRK54_RS14415	0.25	-1.3
3,206,643	-		LRK54_RS14415	0.25	+2.3
3,206,643	-		LRK54_RS14415	0.25	-1.1
3,206,643	-		LRK54_RS14415	0.25	-0.8
3,206,643	-		LRK54_RS14415	0.25	+0.1
3,206,643	-		LRK54_RS14415	0.25	-0.5
3,206,643	-		LRK54_RS14415	0.25	-0.2
3,206,643	-		LRK54_RS14415	0.25	-1.8
3,206,643	-		LRK54_RS14415	0.25	-3.0
3,206,643	-		LRK54_RS14415	0.25	-0.7
3,206,643	-		LRK54_RS14415	0.25	-0.4
3,206,643	-		LRK54_RS14415	0.25	-0.3
3,207,108	+				+0.9
3,207,108	+				-0.2
3,207,108	+				-1.0
3,207,108	+				+1.3
3,207,108	+				+1.9
3,207,108	+				-0.5
3,207,108	+				+0.3
3,207,108	+				+1.0
3,207,146	+				-1.5
3,207,146	+				+2.9
3,207,146	+				+0.9
3,207,146	+				-3.1
3,207,146	+				+1.5
3,207,146	+				-1.6
3,207,146	+				-1.7
3,207,146	+				-0.9
3,207,146	+				-0.7
3,207,146	+				-1.4
3,207,146	+				-1.2
3,207,146	+				-0.5
3,207,146	+				-0.4
3,207,146	+				+2.9
3,207,146	+				+0.1
3,207,147	-				+1.8
3,207,147	-				+1.1
3,207,147	-				-0.7
3,207,147	-				-1.7
3,207,147	-				-0.1
3,207,147	-				-1.2
3,207,147	-				+0.9
3,207,147	-				+0.3
3,207,147	-				-2.2
3,207,147	-				-1.5
3,207,147	-				+0.2
3,207,147	-				+1.9
3,207,147	-				-0.3
3,207,147	-				-1.3
3,207,147	-				+1.6
3,207,148	+				+0.1
3,207,148	+				-0.2
3,207,148	+				-1.7
3,207,148	+				-0.9
3,207,148	+				-0.1
3,207,148	+				-0.8
3,207,148	+				-0.9
3,207,148	+				+0.6
3,207,148	+				-2.4
3,207,148	+				+0.9
3,207,148	+				-0.2
3,207,148	+				-0.9
3,207,148	+				-1.1
3,207,149	-				-0.6
3,207,149	-				+0.0
3,207,149	-				+1.4
3,207,149	-				-1.8
3,207,149	-				+1.7
3,207,149	-				+0.5
3,207,341	+		LRK54_RS14420	0.13	+1.6
3,207,341	+		LRK54_RS14420	0.13	+0.3
3,207,341	+		LRK54_RS14420	0.13	-1.1
3,207,341	+		LRK54_RS14420	0.13	-0.1
3,207,341	+		LRK54_RS14420	0.13	-1.4
3,207,341	+		LRK54_RS14420	0.13	-1.2
3,207,341	+		LRK54_RS14420	0.13	-0.4
3,207,341	+		LRK54_RS14420	0.13	+0.4
3,207,341	+		LRK54_RS14420	0.13	+0.2
3,207,341	+		LRK54_RS14420	0.13	-0.5
3,207,341	+		LRK54_RS14420	0.13	+0.3
3,207,342	-		LRK54_RS14420	0.13	-0.3
3,207,342	-		LRK54_RS14420	0.13	+0.3
3,207,342	-		LRK54_RS14420	0.13	+0.6
3,207,342	-		LRK54_RS14420	0.13	-0.2
3,207,342	-		LRK54_RS14420	0.13	-1.6
3,207,342	-		LRK54_RS14420	0.13	+2.9
3,207,353	+		LRK54_RS14420	0.14	-0.3
3,207,353	+		LRK54_RS14420	0.14	+0.1
3,207,353	+		LRK54_RS14420	0.14	+2.1
3,207,353	+		LRK54_RS14420	0.14	-1.3
3,207,353	+		LRK54_RS14420	0.14	+1.3
3,207,353	+		LRK54_RS14420	0.14	-0.8
3,207,353	+		LRK54_RS14420	0.14	-1.7
3,207,353	+		LRK54_RS14420	0.14	-0.2
3,207,353	+		LRK54_RS14420	0.14	-1.5
3,207,353	+		LRK54_RS14420	0.14	-0.1
3,207,354	-		LRK54_RS14420	0.14	-0.4
3,207,354	-		LRK54_RS14420	0.14	+0.0
3,207,354	-		LRK54_RS14420	0.14	-0.3
3,207,354	-		LRK54_RS14420	0.14	+0.6
3,207,354	-		LRK54_RS14420	0.14	+0.3
3,207,354	-		LRK54_RS14420	0.14	-1.7
3,207,354	-		LRK54_RS14420	0.14	-0.9
3,207,354	-		LRK54_RS14420	0.14	-0.4
3,207,354	-		LRK54_RS14420	0.14	+1.3
3,207,354	-		LRK54_RS14420	0.14	+0.1
3,207,354	-		LRK54_RS14420	0.14	-0.8
3,207,354	-		LRK54_RS14420	0.14	-0.3
3,207,354	-		LRK54_RS14420	0.14	-1.7
3,207,354	-		LRK54_RS14420	0.14	-1.1
3,207,354	-		LRK54_RS14420	0.14	-0.7
3,207,354	-		LRK54_RS14420	0.14	-1.1
3,207,354	-		LRK54_RS14420	0.14	-1.1
3,207,354	-		LRK54_RS14420	0.14	-1.8
3,207,434	+		LRK54_RS14420	0.20	-0.4
3,207,434	+		LRK54_RS14420	0.20	-0.9
3,207,434	+		LRK54_RS14420	0.20	+0.3
3,207,434	+		LRK54_RS14420	0.20	+0.1
3,207,434	+		LRK54_RS14420	0.20	-1.5
3,207,434	+		LRK54_RS14420	0.20	+0.1
3,207,434	+		LRK54_RS14420	0.20	+0.5
3,207,434	+		LRK54_RS14420	0.20	-0.9
3,207,434	+		LRK54_RS14420	0.20	+0.1
3,207,434	+		LRK54_RS14420	0.20	+0.7
3,207,435	-		LRK54_RS14420	0.20	-0.2
3,207,435	-		LRK54_RS14420	0.20	+1.0
3,207,435	-		LRK54_RS14420	0.20	+0.3
3,207,435	-		LRK54_RS14420	0.20	-0.7
3,207,435	-		LRK54_RS14420	0.20	+0.2
3,207,435	-		LRK54_RS14420	0.20	-0.7
3,207,435	-		LRK54_RS14420	0.20	-0.2
3,207,435	-		LRK54_RS14420	0.20	-0.9
3,207,435	-		LRK54_RS14420	0.20	-1.3
3,207,435	-		LRK54_RS14420	0.20	-0.2
3,207,435	-		LRK54_RS14420	0.20	+0.5
3,207,797	+		LRK54_RS14420	0.49	-0.7
3,207,875	+		LRK54_RS14420	0.55	-1.9
3,207,875	+		LRK54_RS14420	0.55	-0.1
3,207,875	+		LRK54_RS14420	0.55	-1.1
3,207,875	+		LRK54_RS14420	0.55	+0.5
3,207,875	+		LRK54_RS14420	0.55	+0.6
3,207,875	+		LRK54_RS14420	0.55	-0.5
3,207,875	+		LRK54_RS14420	0.55	-2.8
3,207,875	+		LRK54_RS14420	0.55	+1.2
3,207,875	+		LRK54_RS14420	0.55	-0.2
3,207,875	+		LRK54_RS14420	0.55	+0.6
3,207,875	+		LRK54_RS14420	0.55	+1.3
3,207,875	+		LRK54_RS14420	0.55	-1.4
3,207,875	+		LRK54_RS14420	0.55	+0.0
3,207,875	+		LRK54_RS14420	0.55	-0.8
3,207,875	+		LRK54_RS14420	0.55	+1.9
3,207,876	-		LRK54_RS14420	0.55	-0.4
3,207,876	-		LRK54_RS14420	0.55	-0.2
3,207,876	-		LRK54_RS14420	0.55	-1.6
3,207,876	-		LRK54_RS14420	0.55	+0.6
3,207,876	-		LRK54_RS14420	0.55	+0.9
3,207,876	-		LRK54_RS14420	0.55	+0.7
3,207,876	-		LRK54_RS14420	0.55	+0.6
3,207,876	-		LRK54_RS14420	0.55	-1.7
3,207,876	-		LRK54_RS14420	0.55	+0.1
3,207,876	-		LRK54_RS14420	0.55	+0.8
3,207,876	-		LRK54_RS14420	0.55	-0.7
3,207,876	-		LRK54_RS14420	0.55	-0.2
3,207,876	-		LRK54_RS14420	0.55	-1.2
3,207,876	-		LRK54_RS14420	0.55	-1.9
3,207,876	-		LRK54_RS14420	0.55	-0.0
3,207,876	-		LRK54_RS14420	0.55	+1.3
3,207,876	-		LRK54_RS14420	0.55	-0.8
3,207,876	-		LRK54_RS14420	0.55	+1.3
3,207,876	-		LRK54_RS14420	0.55	+1.5