Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12650

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
2,823,247	+				+0.3
2,823,247	+				-0.0
2,823,247	+				-0.5
2,823,247	+				-1.3
2,823,247	+				-0.4
2,823,247	+				+0.6
2,823,247	+				+2.0
2,823,247	+				-0.8
2,823,247	+				-0.7
2,823,247	+				+0.1
2,823,247	+				-0.6
2,823,247	+				+1.3
2,823,247	+				+0.4
2,823,248	-				-0.6
2,823,248	-				-1.8
2,823,248	-				+0.5
2,823,248	-				+0.3
2,823,248	-				+3.0
2,823,248	-				-0.8
2,823,248	-				-3.0
2,823,248	-				-0.6
2,823,379	+				+0.2
2,823,379	+				+3.0
2,823,379	+				+1.0
2,823,379	+				-0.9
2,823,379	+				-1.4
2,823,379	+				-0.0
2,823,379	+				-2.5
2,823,379	+				+0.4
2,823,380	-				-0.2
2,823,380	-				-0.2
2,823,380	-				-0.1
2,823,380	-				-0.5
2,823,380	-				-2.3
2,823,380	-				-0.6
2,823,380	-				-0.2
2,823,537	-				-0.6
2,823,537	-				+0.5
2,823,537	-				+0.1
2,823,593	+				-1.6
2,823,593	+				+0.2
2,823,593	+				-1.8
2,823,593	+				-0.6
2,823,593	+				-1.5
2,823,593	+				-2.1
2,823,593	+				-2.1
2,823,593	+				-2.0
2,823,593	+				-0.9
2,823,593	+				+0.6
2,823,593	+				-0.7
2,823,593	+				-0.6
2,823,593	+				+1.1
2,823,593	+				+1.4
2,823,593	+				+0.6
2,823,593	+				+0.8
2,823,593	+				-0.3
2,823,593	+				+1.4
2,823,593	+				+1.0
2,823,593	+				-0.5
2,823,593	+				+0.9
2,823,593	+				+1.2
2,823,593	+				-0.2
2,823,593	+				-1.5
2,823,593	+				-1.3
2,823,593	+				-0.0
2,823,594	-				+0.7
2,823,594	-				+0.7
2,823,594	-				+1.1
2,823,594	-				-0.1
2,823,594	-				+1.0
2,823,594	-				+2.1
2,823,594	-				-0.4
2,823,594	-				+0.4
2,823,594	-				+1.1
2,823,594	-				-0.5
2,823,594	-				-1.5
2,823,594	-				-0.5
2,823,594	-				+0.9
2,823,594	-				+1.2
2,823,594	-				+0.3
2,823,594	-				+0.2
2,823,594	-				-0.9
2,823,594	-				+1.4
2,823,594	-				+0.6
2,823,594	-				-0.0
2,823,594	-				+2.4
2,823,594	-				-1.0
2,823,594	-				-2.0
2,823,594	-				-0.4
2,823,594	-				+0.2
2,823,594	-				+3.0
2,823,594	-				+1.0
2,823,622	-				+2.0
2,823,691	+		LRK54_RS12650	0.11	-0.6
2,823,691	+		LRK54_RS12650	0.11	-1.0
2,823,691	+		LRK54_RS12650	0.11	-0.0
2,823,691	+		LRK54_RS12650	0.11	-0.6
2,823,691	+		LRK54_RS12650	0.11	+1.5
2,823,692	-		LRK54_RS12650	0.11	-0.4
2,823,692	-		LRK54_RS12650	0.11	-0.7
2,823,692	-		LRK54_RS12650	0.11	+0.3
2,823,692	-		LRK54_RS12650	0.11	-0.1
2,823,866	+		LRK54_RS12650	0.53	-0.5
2,823,866	+		LRK54_RS12650	0.53	+0.4
2,823,866	+		LRK54_RS12650	0.53	-0.5
2,823,866	+		LRK54_RS12650	0.53	-0.5
2,823,866	+		LRK54_RS12650	0.53	-0.0
2,823,866	+		LRK54_RS12650	0.53	+0.4
2,823,866	+		LRK54_RS12650	0.53	-0.9
2,823,866	+		LRK54_RS12650	0.53	-0.9
2,823,866	+		LRK54_RS12650	0.53	+0.4
2,823,866	+		LRK54_RS12650	0.53	-0.7
2,823,866	+		LRK54_RS12650	0.53	+0.2
2,823,866	+		LRK54_RS12650	0.53	-0.3
2,823,866	+		LRK54_RS12650	0.53	+1.4
2,823,866	+		LRK54_RS12650	0.53	+0.1
2,823,866	+		LRK54_RS12650	0.53	-0.1
2,823,866	+		LRK54_RS12650	0.53	-0.4
2,823,866	+		LRK54_RS12650	0.53	+0.7
2,823,866	+		LRK54_RS12650	0.53	-0.6
2,823,866	+		LRK54_RS12650	0.53	+0.1
2,823,866	+		LRK54_RS12650	0.53	-0.7
2,823,866	+		LRK54_RS12650	0.53	+0.2
2,823,866	+		LRK54_RS12650	0.53	-0.2
2,823,866	+		LRK54_RS12650	0.53	-1.4
2,823,866	+		LRK54_RS12650	0.53	+1.2
2,823,867	-		LRK54_RS12650	0.54	-0.0
2,823,867	-		LRK54_RS12650	0.54	+1.3
2,823,867	-		LRK54_RS12650	0.54	-1.3
2,823,867	-		LRK54_RS12650	0.54	-1.0
2,823,867	-		LRK54_RS12650	0.54	-0.0
2,823,867	-		LRK54_RS12650	0.54	+1.7
2,823,867	-		LRK54_RS12650	0.54	+3.0
2,823,867	-		LRK54_RS12650	0.54	-0.4
2,823,867	-		LRK54_RS12650	0.54	+0.5
2,823,867	-		LRK54_RS12650	0.54	-0.6
2,823,867	-		LRK54_RS12650	0.54	-0.2
2,823,867	-		LRK54_RS12650	0.54	+0.2
2,823,867	-		LRK54_RS12650	0.54	-1.2
2,823,867	-		LRK54_RS12650	0.54	-1.8
2,823,867	-		LRK54_RS12650	0.54	+0.6
2,823,867	-		LRK54_RS12650	0.54	-0.2
2,823,867	-		LRK54_RS12650	0.54	-0.5
2,823,952	+		LRK54_RS12650	0.74	-0.6
2,823,952	+		LRK54_RS12650	0.74	+0.2
2,823,952	+		LRK54_RS12650	0.74	-0.8
2,823,952	+		LRK54_RS12650	0.74	+1.0
2,823,952	+		LRK54_RS12650	0.74	-1.3
2,823,952	+		LRK54_RS12650	0.74	+0.2
2,823,952	+		LRK54_RS12650	0.74	+3.0
2,823,953	-		LRK54_RS12650	0.74	+1.0
2,823,953	-		LRK54_RS12650	0.74	-1.6
2,823,953	-		LRK54_RS12650	0.74	-1.9
2,823,953	-		LRK54_RS12650	0.74	-0.4
2,823,953	-		LRK54_RS12650	0.74	+0.2
2,823,953	-		LRK54_RS12650	0.74	-0.3
2,823,953	-		LRK54_RS12650	0.74	+1.0
2,824,055	+				-1.0
2,824,055	+				+1.0
2,824,055	+				-0.2
2,824,055	+				-1.1
2,824,056	-				+1.0
2,824,056	-				+0.6
2,824,056	-				-1.0
2,824,056	-				-0.6
2,824,056	-				-0.8
2,824,056	-				-0.9
2,824,162	+				-1.9
2,824,162	+				-1.3
2,824,162	+				+0.5
2,824,163	-				-0.2
2,824,163	-				-0.4
2,824,195	+				+0.2
2,824,195	+				-0.0
2,824,195	+				-1.3
2,824,195	+				-0.5
2,824,195	+				-0.0
2,824,195	+				-0.4
2,824,195	+				+1.0
2,824,195	+				-0.5
2,824,195	+				-0.7
2,824,195	+				-0.6
2,824,195	+				-1.0
2,824,196	-				-0.6
2,824,196	-				+1.7
2,824,196	-				+0.1
2,824,196	-				+0.8
2,824,196	-				+0.4
2,824,196	-				-2.9
2,824,231	+				-0.0
2,824,232	-				-0.5
2,824,349	-				+0.6
2,824,423	+		LRK54_RS12655	0.13	-1.1
2,824,423	+		LRK54_RS12655	0.13	-1.2
2,824,423	+		LRK54_RS12655	0.13	-0.8
2,824,423	+		LRK54_RS12655	0.13	-0.8
2,824,423	+		LRK54_RS12655	0.13	+2.0
2,824,423	+		LRK54_RS12655	0.13	+0.4
2,824,424	-		LRK54_RS12655	0.13	-1.2
2,824,432	+		LRK54_RS12655	0.13	-0.8
2,824,432	+		LRK54_RS12655	0.13	+1.5
2,824,432	+		LRK54_RS12655	0.13	+0.7
2,824,432	+		LRK54_RS12655	0.13	-1.3
2,824,432	+		LRK54_RS12655	0.13	+0.2
2,824,433	-		LRK54_RS12655	0.13	-1.2
2,824,433	-		LRK54_RS12655	0.13	+0.7
2,824,433	-		LRK54_RS12655	0.13	+0.2
2,824,516	+		LRK54_RS12655	0.17	+0.6
2,824,677	+		LRK54_RS12655	0.25	+0.6
2,824,678	+		LRK54_RS12655	0.25	+0.6
2,824,678	+		LRK54_RS12655	0.25	-1.4
2,824,678	+		LRK54_RS12655	0.25	+0.6
2,824,678	+		LRK54_RS12655	0.25	-3.0
2,824,678	+		LRK54_RS12655	0.25	-0.4
2,824,678	+		LRK54_RS12655	0.25	-0.9
2,824,678	+		LRK54_RS12655	0.25	-0.8
2,824,678	+		LRK54_RS12655	0.25	+1.0
2,824,679	-		LRK54_RS12655	0.25	-0.5
2,824,679	-		LRK54_RS12655	0.25	-0.0
2,824,679	-		LRK54_RS12655	0.25	-0.8
2,824,679	-		LRK54_RS12655	0.25	-0.6
2,824,679	-		LRK54_RS12655	0.25	-0.2
2,824,679	-		LRK54_RS12655	0.25	-1.4
2,824,679	-		LRK54_RS12655	0.25	-1.7
2,824,679	-		LRK54_RS12655	0.25	+1.1
2,824,679	-		LRK54_RS12655	0.25	-0.3
2,824,679	-		LRK54_RS12655	0.25	-0.3
2,824,679	-		LRK54_RS12655	0.25	-0.9
2,824,679	-		LRK54_RS12655	0.25	+0.2
2,824,679	-		LRK54_RS12655	0.25	+0.1
2,824,679	-		LRK54_RS12655	0.25	-0.4
2,824,679	-		LRK54_RS12655	0.25	+0.4
2,824,679	-		LRK54_RS12655	0.25	-0.6
2,824,679	-		LRK54_RS12655	0.25	-0.8
2,824,847	-		LRK54_RS12655	0.33	+0.1
2,824,913	-		LRK54_RS12655	0.37	-1.5
2,824,913	-		LRK54_RS12655	0.37	+1.3
2,824,925	+		LRK54_RS12655	0.37	+1.1
2,824,925	+		LRK54_RS12655	0.37	-0.8
2,824,925	+		LRK54_RS12655	0.37	+2.0
2,824,926	-		LRK54_RS12655	0.37	+2.0
2,824,933	+		LRK54_RS12655	0.38	-0.2
2,825,010	-		LRK54_RS12655	0.41	+0.3