Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14445

Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; autoclaved 2.5 mg/ml (C)
1,199,124	-		HMPREF1058_RS14450	0.53	+0.5
1,199,124	-		HMPREF1058_RS14450	0.53	-1.4
1,199,139	+		HMPREF1058_RS14450	0.54	+0.9
1,199,139	+		HMPREF1058_RS14450	0.54	-0.4
1,199,140	-		HMPREF1058_RS14450	0.54	+0.3
1,199,232	-		HMPREF1058_RS14450	0.59	+0.9
1,199,232	-		HMPREF1058_RS14450	0.59	-1.7
1,199,248	-		HMPREF1058_RS14450	0.60	-0.5
1,199,287	-		HMPREF1058_RS14450	0.63	+0.3
1,199,287	-		HMPREF1058_RS14450	0.63	+0.9
1,199,339	-		HMPREF1058_RS14450	0.66	+0.8
1,199,363	+		HMPREF1058_RS14450	0.67	-1.3
1,199,363	+		HMPREF1058_RS14450	0.67	+0.3
1,199,372	-		HMPREF1058_RS14450	0.68	+1.9
1,199,372	-		HMPREF1058_RS14450	0.68	-1.4
1,199,405	+		HMPREF1058_RS14450	0.70	+1.3
1,199,473	-		HMPREF1058_RS14450	0.74	+1.0
1,199,537	-		HMPREF1058_RS14450	0.78	+2.5
1,199,546	+		HMPREF1058_RS14450	0.78	+1.6
1,199,832	+				-0.7
1,199,833	-				+0.2
1,199,859	-				+0.3
1,199,927	-				-1.8
1,200,037	+				+1.0
1,200,038	-				-1.3
1,200,038	-				+0.3
1,200,066	+				+0.2
1,200,110	+		HMPREF1058_RS14445	0.17	+0.4
1,200,110	+		HMPREF1058_RS14445	0.17	+2.3
1,200,111	-		HMPREF1058_RS14445	0.17	-0.4
1,200,111	-		HMPREF1058_RS14445	0.17	+0.3
1,200,111	-		HMPREF1058_RS14445	0.17	-0.3
1,200,116	-		HMPREF1058_RS14445	0.18	-1.2
1,200,119	+		HMPREF1058_RS14445	0.18	+1.2
1,200,133	-		HMPREF1058_RS14445	0.21	+0.4
1,200,141	-		HMPREF1058_RS14445	0.22	+0.5
1,200,147	+		HMPREF1058_RS14445	0.23	-1.4
1,200,295	-		HMPREF1058_RS14445	0.49	+0.4
1,200,363	-		HMPREF1058_RS14445	0.60	-1.9
1,200,399	+		HMPREF1058_RS14445	0.66	+0.2
1,200,435	-		HMPREF1058_RS14445	0.72	-1.4
1,200,508	-		HMPREF1058_RS14445	0.85	+0.0
1,200,637	-				-0.2
1,200,674	-				+2.1
1,200,738	+				+0.0
1,200,790	-		HMPREF1058_RS14440	0.11	-0.4
1,200,790	-		HMPREF1058_RS14440	0.11	-0.2
1,200,807	+		HMPREF1058_RS14440	0.12	-0.7
1,200,826	-		HMPREF1058_RS14440	0.14	+1.1
1,200,842	-		HMPREF1058_RS14440	0.16	+1.5
1,200,893	-		HMPREF1058_RS14440	0.20	-0.7
1,200,893	-		HMPREF1058_RS14440	0.20	+0.5
1,200,914	+		HMPREF1058_RS14440	0.22	+4.7
1,200,945	+		HMPREF1058_RS14440	0.24	+1.9
1,200,984	+		HMPREF1058_RS14440	0.28	+1.1
1,201,097	-		HMPREF1058_RS14440	0.37	-1.4
1,201,242	+		HMPREF1058_RS14440	0.50	-1.8
1,201,327	+		HMPREF1058_RS14440	0.57	-0.3
1,201,386	+		HMPREF1058_RS14440	0.62	-1.5
1,201,387	-		HMPREF1058_RS14440	0.62	+1.9
1,201,403	-		HMPREF1058_RS14440	0.64	+0.1
1,201,405	+		HMPREF1058_RS14440	0.64	-1.3
1,201,405	+		HMPREF1058_RS14440	0.64	+1.1
1,201,409	+		HMPREF1058_RS14440	0.64	+1.7
1,201,409	+		HMPREF1058_RS14440	0.64	-2.3
1,201,410	-		HMPREF1058_RS14440	0.64	+1.4
1,201,410	-		HMPREF1058_RS14440	0.64	-1.2
1,201,515	-		HMPREF1058_RS14440	0.73	-0.8
1,201,518	+		HMPREF1058_RS14440	0.74	+0.5