Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06105

Experiment: Pectin from apple; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pectin from apple; autoclaved 2.5 mg/ml (C)
656	+		HMPREF1058_RS21480	0.24	-0.6
772	-		HMPREF1058_RS21480	0.76	-2.1
922	-				+1.2
979	-				-0.6
983	+				-0.3
983	+				+2.4
1,005	+				-0.5
1,005	+				-0.0
1,006	-				-0.3
1,006	-				-0.3
1,020	+				-0.8
1,023	+				+0.1
1,024	-				+0.2
1,029	-				-0.3
1,043	+				-0.6
1,044	-				+0.3
1,093	+				-1.2
1,105	+				-0.6
1,105	+				+0.5
1,183	-				-0.0
1,231	+				+0.4
1,232	-				-1.2
1,308	+				-0.7
1,333	+				+1.4
1,334	-				-1.0
1,334	-				+0.2
1,356	+				-0.3
1,357	-				-2.5
1,375	+				-2.2
1,380	+				+0.7
1,380	+				+1.1
1,380	+				+0.5
1,608	+				-0.0
1,657	+				-0.9
1,658	-				-1.4
1,664	+				-1.4
1,696	+				+1.0
1,697	-				-0.3
1,708	+				-1.7
1,708	+				+1.7
1,709	-				+2.0
1,709	-				-0.5
1,719	+				-1.6
1,719	+				-0.9
1,747	-				-0.2
1,749	+		HMPREF1058_RS06105	0.10	-0.6
1,758	+		HMPREF1058_RS06105	0.11	-0.6
1,827	-		HMPREF1058_RS06105	0.17	-2.4
1,880	-		HMPREF1058_RS06105	0.21	-2.3
1,968	+		HMPREF1058_RS06105	0.28	-0.3
1,971	-		HMPREF1058_RS06105	0.29	+0.4
1,971	-		HMPREF1058_RS06105	0.29	-0.7
1,971	-		HMPREF1058_RS06105	0.29	-0.2
1,980	+		HMPREF1058_RS06105	0.29	-1.6
1,981	-		HMPREF1058_RS06105	0.29	-0.6
1,981	-		HMPREF1058_RS06105	0.29	-0.4
2,161	+		HMPREF1058_RS06105	0.45	-1.5
2,259	+		HMPREF1058_RS06105	0.53	+2.0
2,259	+		HMPREF1058_RS06105	0.53	-1.9
2,276	+				+0.2
2,280	+		HMPREF1058_RS06105	0.55	+3.0
2,282	+		HMPREF1058_RS06105	0.55	-0.3
2,282	+		HMPREF1058_RS06105	0.55	-1.7
2,293	-		HMPREF1058_RS06105	0.56	-0.6
2,296	+		HMPREF1058_RS06105	0.56	-1.2
2,332	+		HMPREF1058_RS06105	0.59	-1.5
2,333	-		HMPREF1058_RS06105	0.59	-1.7
2,454	-		HMPREF1058_RS06105	0.69	-1.7
2,454	-		HMPREF1058_RS06105	0.69	+1.7
2,462	+		HMPREF1058_RS06105	0.70	-1.1
2,463	-		HMPREF1058_RS06105	0.70	-2.6
2,464	+		HMPREF1058_RS06105	0.70	-1.5
2,464	+		HMPREF1058_RS06105	0.70	+0.1
2,693	+		HMPREF1058_RS06105	0.89	+0.0
2,693	+		HMPREF1058_RS06105	0.89	+0.5
2,693	+		HMPREF1058_RS06105	0.89	+0.9
2,694	-		HMPREF1058_RS06105	0.89	+0.4
2,694	-		HMPREF1058_RS06105	0.89	-1.9
2,694	-		HMPREF1058_RS06105	0.89	-1.3
2,699	+		HMPREF1058_RS06105	0.90	-2.4
2,699	+		HMPREF1058_RS06105	0.90	+1.4
2,700	-		HMPREF1058_RS06105	0.90	-0.6
2,700	-		HMPREF1058_RS06105	0.90	-0.5
2,703	+				-0.3
2,704	-				+0.8
2,704	-				-0.3
2,705	+				-0.1
2,746	+				-0.6
2,791	+				+0.7
2,797	+				+3.0
2,801	-				-0.5
2,802	+				-0.9
2,803	-				+0.1
2,803	-				-0.3
2,806	-				-0.3
2,911	+				-1.5
2,912	-				+1.1
2,913	+				-1.8
2,913	+				-1.0
2,913	+				+1.1
2,913	+				-0.7
2,914	-				-0.6
2,995	-		HMPREF1058_RS06100	0.16	+0.9
3,194	-		HMPREF1058_RS06100	0.33	-1.1
3,194	-		HMPREF1058_RS06100	0.33	-0.9
3,216	+		HMPREF1058_RS06100	0.35	-0.3
3,355	-		HMPREF1058_RS06100	0.47	-0.6
3,355	-		HMPREF1058_RS06100	0.47	+1.0
3,359	-		HMPREF1058_RS06100	0.47	-0.6
3,377	-		HMPREF1058_RS06100	0.49	-1.8
3,377	-		HMPREF1058_RS06100	0.49	-0.1
3,409	+		HMPREF1058_RS06100	0.52	+0.2
3,409	+		HMPREF1058_RS06100	0.52	-3.1
3,415	-		HMPREF1058_RS06100	0.52	-0.0
3,485	+		HMPREF1058_RS06100	0.58	-1.4
3,501	-		HMPREF1058_RS06100	0.59	+0.2
3,604	-		HMPREF1058_RS06100	0.68	+0.5
3,616	-		HMPREF1058_RS06100	0.69	+0.6
3,684	+		HMPREF1058_RS06100	0.75	+0.1
3,780	-		HMPREF1058_RS06100	0.83	-2.2
3,799	+		HMPREF1058_RS06100	0.85	-0.5
3,800	-		HMPREF1058_RS06100	0.85	-1.1