Experiment: Galactan from Potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17570 and HMPREF1058_RS17565 are separated by 444 nucleotides HMPREF1058_RS17565 and HMPREF1058_RS0119335 are separated by 116 nucleotides
HMPREF1058_RS17570: HMPREF1058_RS17570 - RteC domain-containing protein, at 394,229 to 395,089
_RS17570
HMPREF1058_RS17565: HMPREF1058_RS17565 - tyrosine-type recombinase/integrase, at 395,534 to 395,881
_RS17565
HMPREF1058_RS0119335: HMPREF1058_RS0119335 - site-specific integrase, at 395,998 to 397,231
_RS0119335
Position (kb) 395
396 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.540 kb on + strand, within HMPREF1058_RS17570 at 394.579 kb on + strand at 394.623 kb on + strand, within HMPREF1058_RS17570 at 394.632 kb on - strand, within HMPREF1058_RS17570 at 394.682 kb on - strand, within HMPREF1058_RS17570 at 394.712 kb on + strand, within HMPREF1058_RS17570 at 394.745 kb on + strand, within HMPREF1058_RS17570 at 394.892 kb on + strand, within HMPREF1058_RS17570 at 394.893 kb on - strand, within HMPREF1058_RS17570 at 394.893 kb on - strand, within HMPREF1058_RS17570 at 394.929 kb on + strand, within HMPREF1058_RS17570 at 394.946 kb on + strand, within HMPREF1058_RS17570 at 394.947 kb on - strand, within HMPREF1058_RS17570 at 394.950 kb on + strand, within HMPREF1058_RS17570 at 394.951 kb on - strand, within HMPREF1058_RS17570 at 394.951 kb on - strand, within HMPREF1058_RS17570 at 394.968 kb on + strand, within HMPREF1058_RS17570 at 394.974 kb on + strand, within HMPREF1058_RS17570 at 394.983 kb on - strand, within HMPREF1058_RS17570 at 394.990 kb on + strand, within HMPREF1058_RS17570 at 394.991 kb on - strand, within HMPREF1058_RS17570 at 395.050 kb on - strand at 395.142 kb on + strand at 395.192 kb on + strand at 395.473 kb on + strand at 395.473 kb on + strand at 395.474 kb on - strand at 395.549 kb on + strand at 395.549 kb on + strand at 395.550 kb on - strand at 395.565 kb on - strand at 395.666 kb on + strand, within HMPREF1058_RS17565 at 395.716 kb on - strand, within HMPREF1058_RS17565 at 395.808 kb on - strand, within HMPREF1058_RS17565 at 396.406 kb on + strand, within HMPREF1058_RS0119335 at 396.407 kb on - strand, within HMPREF1058_RS0119335 at 396.600 kb on - strand, within HMPREF1058_RS0119335
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato 2.5 mg/ml (C) remove 394,540 + HMPREF1058_RS17570 0.36 +0.0 394,579 + +1.4 394,623 + HMPREF1058_RS17570 0.46 +0.2 394,632 - HMPREF1058_RS17570 0.47 -1.4 394,682 - HMPREF1058_RS17570 0.53 -1.7 394,712 + HMPREF1058_RS17570 0.56 +2.1 394,745 + HMPREF1058_RS17570 0.60 +1.6 394,892 + HMPREF1058_RS17570 0.77 -0.1 394,893 - HMPREF1058_RS17570 0.77 -2.1 394,893 - HMPREF1058_RS17570 0.77 -0.2 394,929 + HMPREF1058_RS17570 0.81 +0.4 394,946 + HMPREF1058_RS17570 0.83 -0.7 394,947 - HMPREF1058_RS17570 0.83 +0.2 394,950 + HMPREF1058_RS17570 0.84 +1.0 394,951 - HMPREF1058_RS17570 0.84 +0.9 394,951 - HMPREF1058_RS17570 0.84 +1.0 394,968 + HMPREF1058_RS17570 0.86 -0.6 394,974 + HMPREF1058_RS17570 0.87 -0.3 394,983 - HMPREF1058_RS17570 0.88 -0.6 394,990 + HMPREF1058_RS17570 0.88 +0.3 394,991 - HMPREF1058_RS17570 0.89 -0.1 395,050 - -0.1 395,142 + +0.5 395,192 + +0.7 395,473 + -2.5 395,473 + -2.0 395,474 - +0.2 395,549 + +0.1 395,549 + +2.5 395,550 - -1.1 395,565 - +1.2 395,666 + HMPREF1058_RS17565 0.38 -1.2 395,716 - HMPREF1058_RS17565 0.52 -1.4 395,808 - HMPREF1058_RS17565 0.79 -1.2 396,406 + HMPREF1058_RS0119335 0.33 -1.1 396,407 - HMPREF1058_RS0119335 0.33 +0.7 396,600 - HMPREF1058_RS0119335 0.49 -0.4
Or see this region's nucleotide sequence