Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16485

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,616,671	+				-0.9
3,616,775	-		LRK54_RS16480	0.13	-0.1
3,616,845	+		LRK54_RS16480	0.21	+1.0
3,616,845	+		LRK54_RS16480	0.21	+0.5
3,616,846	-		LRK54_RS16480	0.21	-1.2
3,616,846	-		LRK54_RS16480	0.21	-1.0
3,616,846	-		LRK54_RS16480	0.21	+0.2
3,616,846	-		LRK54_RS16480	0.21	-1.6
3,616,846	-		LRK54_RS16480	0.21	-2.0
3,616,846	-		LRK54_RS16480	0.21	+1.5
3,616,846	-		LRK54_RS16480	0.21	-0.5
3,616,846	-		LRK54_RS16480	0.21	-1.2
3,616,846	-		LRK54_RS16480	0.21	+1.1
3,616,846	-		LRK54_RS16480	0.21	-2.5
3,616,846	-		LRK54_RS16480	0.21	-0.7
3,617,367	+		LRK54_RS16480	0.84	-0.7
3,617,367	+		LRK54_RS16480	0.84	+0.5
3,617,367	+		LRK54_RS16480	0.84	-0.2
3,617,367	+		LRK54_RS16480	0.84	+1.8
3,617,367	+		LRK54_RS16480	0.84	-0.5
3,617,367	+		LRK54_RS16480	0.84	+0.2
3,617,367	+		LRK54_RS16480	0.84	-1.2
3,617,368	-		LRK54_RS16480	0.84	-0.6
3,617,368	-		LRK54_RS16480	0.84	-1.0
3,617,368	-		LRK54_RS16480	0.84	+0.3
3,617,368	-		LRK54_RS16480	0.84	-0.7
3,617,368	-		LRK54_RS16480	0.84	-1.6
3,617,368	-		LRK54_RS16480	0.84	+0.4
3,617,368	-		LRK54_RS16480	0.84	+1.1
3,617,412	+		LRK54_RS16480	0.89	-1.0
3,617,413	-		LRK54_RS16480	0.89	+1.3
3,617,512	+				-0.6
3,617,512	+				-1.4
3,617,512	+				-1.6
3,617,513	-				+0.5
3,617,574	+				+0.1
3,617,574	+				-0.9
3,617,574	+				-0.9
3,617,574	+				-0.3
3,617,574	+				-3.0
3,617,574	+				+2.8
3,617,574	+				+0.3
3,617,574	+				-1.0
3,617,574	+				+0.7
3,617,574	+				+0.8
3,617,574	+				+1.8
3,617,574	+				+2.8
3,617,574	+				+0.3
3,617,574	+				+1.1
3,617,574	+				-0.8
3,617,574	+				-0.6
3,617,574	+				-0.6
3,617,574	+				+0.3
3,617,574	+				-1.1
3,617,574	+				+2.1
3,617,574	+				-0.9
3,617,574	+				-0.7
3,617,574	+				+0.7
3,617,574	+				-1.7
3,617,574	+				-0.1
3,617,575	-				-0.7
3,617,575	-				-2.4
3,617,575	-				-1.7
3,617,575	-				-1.5
3,617,575	-				-2.5
3,617,575	-				-1.0
3,617,575	-				-1.2
3,617,575	-				-1.8
3,617,575	-				-0.4
3,617,575	-				-2.0
3,617,575	-				-0.8
3,617,575	-				-0.2
3,617,575	-				-1.7
3,617,575	-				-0.5
3,617,575	-				+0.3
3,617,575	-				-0.3
3,617,575	-				-0.2
3,617,575	-				-1.6
3,617,596	+				+0.3
3,617,596	+				-0.5
3,617,596	+				-0.3
3,617,596	+				-0.8
3,617,596	+				+1.8
3,617,597	-				-0.9
3,617,796	+				-0.7
3,617,796	+				-1.6
3,617,796	+				+0.5
3,617,797	-				+1.3
3,617,797	-				-1.7
3,617,805	+		LRK54_RS16485	0.10	-0.1
3,617,805	+		LRK54_RS16485	0.10	+0.6
3,617,805	+		LRK54_RS16485	0.10	+2.8
3,617,806	-		LRK54_RS16485	0.10	-0.7
3,617,806	-		LRK54_RS16485	0.10	+4.8
3,617,806	-		LRK54_RS16485	0.10	+0.6
3,618,013	-		LRK54_RS16485	0.24	+1.8
3,618,013	-		LRK54_RS16485	0.24	-1.1
3,618,054	+		LRK54_RS16485	0.27	-1.2
3,618,054	+		LRK54_RS16485	0.27	-0.5
3,618,054	+		LRK54_RS16485	0.27	-1.7
3,618,055	-		LRK54_RS16485	0.27	-3.1
3,618,055	-		LRK54_RS16485	0.27	-1.3
3,618,087	+		LRK54_RS16485	0.29	+0.0
3,618,087	+		LRK54_RS16485	0.29	-0.1
3,618,087	+		LRK54_RS16485	0.29	-1.4
3,618,087	+		LRK54_RS16485	0.29	-0.1
3,618,087	+		LRK54_RS16485	0.29	-1.2
3,618,087	+		LRK54_RS16485	0.29	+1.8
3,618,088	-		LRK54_RS16485	0.29	+0.1
3,618,088	-		LRK54_RS16485	0.29	-2.0
3,618,088	-		LRK54_RS16485	0.29	+0.3
3,618,088	-		LRK54_RS16485	0.29	-2.7
3,618,088	-		LRK54_RS16485	0.29	-1.5
3,618,088	-		LRK54_RS16485	0.29	-1.3
3,618,088	-		LRK54_RS16485	0.29	+0.3
3,618,138	+		LRK54_RS16485	0.33	+0.3
3,618,138	+		LRK54_RS16485	0.33	+0.5
3,618,138	+		LRK54_RS16485	0.33	-0.1
3,618,138	+		LRK54_RS16485	0.33	+0.0
3,618,138	+		LRK54_RS16485	0.33	+0.0
3,618,138	+		LRK54_RS16485	0.33	-0.4
3,618,138	+		LRK54_RS16485	0.33	-0.6
3,618,139	-		LRK54_RS16485	0.33	-0.2
3,618,139	-		LRK54_RS16485	0.33	-0.8
3,618,139	-		LRK54_RS16485	0.33	+0.3
3,618,139	-		LRK54_RS16485	0.33	-1.3
3,618,139	-		LRK54_RS16485	0.33	-0.2
3,618,139	-		LRK54_RS16485	0.33	+0.7
3,618,139	-		LRK54_RS16485	0.33	+0.5
3,618,139	-		LRK54_RS16485	0.33	-1.1
3,618,140	+		LRK54_RS16485	0.33	+0.1
3,618,141	-		LRK54_RS16485	0.33	+0.8
3,618,141	-		LRK54_RS16485	0.33	+2.3
3,618,213	+		LRK54_RS16485	0.38	+0.3
3,618,213	+		LRK54_RS16485	0.38	+1.7
3,618,213	+		LRK54_RS16485	0.38	-0.4
3,618,213	+		LRK54_RS16485	0.38	-0.7
3,618,214	-		LRK54_RS16485	0.38	+1.2
3,618,214	-		LRK54_RS16485	0.38	-2.5
3,618,214	-		LRK54_RS16485	0.38	-0.2
3,618,214	-		LRK54_RS16485	0.38	-0.5
3,618,214	-		LRK54_RS16485	0.38	+1.0
3,618,292	-		LRK54_RS16485	0.43	+1.6
3,618,327	+		LRK54_RS16485	0.45	-1.6
3,618,327	+		LRK54_RS16485	0.45	-1.2
3,618,327	+		LRK54_RS16485	0.45	-1.9
3,618,327	+		LRK54_RS16485	0.45	-1.8
3,618,327	+		LRK54_RS16485	0.45	+0.3
3,618,327	+		LRK54_RS16485	0.45	+0.0
3,618,327	+		LRK54_RS16485	0.45	-0.5
3,618,327	+		LRK54_RS16485	0.45	-0.7
3,618,327	+		LRK54_RS16485	0.45	+0.4
3,618,327	+		LRK54_RS16485	0.45	-1.1
3,618,327	+		LRK54_RS16485	0.45	+0.3
3,618,327	+		LRK54_RS16485	0.45	+0.0
3,618,327	+		LRK54_RS16485	0.45	+2.6
3,618,327	+		LRK54_RS16485	0.45	-1.2
3,618,327	+		LRK54_RS16485	0.45	-1.5
3,618,327	+		LRK54_RS16485	0.45	-0.3
3,618,328	-		LRK54_RS16485	0.45	-1.0
3,618,328	-		LRK54_RS16485	0.45	+0.5
3,618,328	-		LRK54_RS16485	0.45	-0.1
3,618,328	-		LRK54_RS16485	0.45	-0.5
3,618,328	-		LRK54_RS16485	0.45	+0.6
3,618,328	-		LRK54_RS16485	0.45	+0.5
3,618,328	-		LRK54_RS16485	0.45	-0.2
3,618,328	-		LRK54_RS16485	0.45	-1.9
3,618,328	-		LRK54_RS16485	0.45	+1.3
3,618,328	-		LRK54_RS16485	0.45	-0.2
3,618,328	-		LRK54_RS16485	0.45	-1.1
3,618,328	-		LRK54_RS16485	0.45	-0.4
3,618,328	-		LRK54_RS16485	0.45	-1.7
3,618,328	-		LRK54_RS16485	0.45	-0.2
3,618,328	-		LRK54_RS16485	0.45	-0.6
3,618,711	+		LRK54_RS16485	0.71	+0.8
3,618,711	+		LRK54_RS16485	0.71	+1.3
3,618,711	+		LRK54_RS16485	0.71	-1.4
3,618,711	+		LRK54_RS16485	0.71	+0.6
3,618,711	+		LRK54_RS16485	0.71	-1.2
3,618,712	-		LRK54_RS16485	0.71	-0.6
3,619,092	+				-1.2
3,619,092	+				-0.5
3,619,144	-				-1.9
3,619,347	+		LRK54_RS16490	0.27	+0.5
3,619,347	+		LRK54_RS16490	0.27	+0.0
3,619,347	+		LRK54_RS16490	0.27	+1.1
3,619,347	+		LRK54_RS16490	0.27	+0.0
3,619,348	-		LRK54_RS16490	0.28	+0.8
3,619,515	+		LRK54_RS16490	0.52	+0.0
3,619,515	+		LRK54_RS16490	0.52	+0.2
3,619,515	+		LRK54_RS16490	0.52	+0.0
3,619,515	+		LRK54_RS16490	0.52	-0.9
3,619,515	+		LRK54_RS16490	0.52	+2.0
3,619,516	-		LRK54_RS16490	0.52	+0.3
3,619,516	-		LRK54_RS16490	0.52	+0.5
3,619,516	-		LRK54_RS16490	0.52	-1.9
3,619,516	-		LRK54_RS16490	0.52	-0.6
3,619,516	-		LRK54_RS16490	0.52	+0.0
3,619,516	-		LRK54_RS16490	0.52	-0.6
3,619,516	-		LRK54_RS16490	0.52	-0.4
3,619,524	+		LRK54_RS16490	0.54	-0.2
3,619,524	+		LRK54_RS16490	0.54	-0.7
3,619,524	+		LRK54_RS16490	0.54	+0.2
3,619,524	+		LRK54_RS16490	0.54	+1.3
3,619,525	-		LRK54_RS16490	0.54	+0.7
3,619,525	-		LRK54_RS16490	0.54	+0.6
3,619,525	-		LRK54_RS16490	0.54	+0.8
3,619,557	+		LRK54_RS16490	0.58	-1.1
3,619,557	+		LRK54_RS16490	0.58	-2.0
3,619,557	+		LRK54_RS16490	0.58	-0.2
3,619,557	+		LRK54_RS16490	0.58	+0.2
3,619,558	-		LRK54_RS16490	0.59	-0.4
3,619,558	-		LRK54_RS16490	0.59	+1.1
3,619,558	-		LRK54_RS16490	0.59	-0.5
3,619,569	+		LRK54_RS16490	0.60	+0.4
3,619,569	+		LRK54_RS16490	0.60	-0.7
3,619,569	+		LRK54_RS16490	0.60	+0.7
3,619,569	+		LRK54_RS16490	0.60	+0.2
3,619,569	+		LRK54_RS16490	0.60	+0.3
3,619,569	+		LRK54_RS16490	0.60	-0.7
3,619,570	-		LRK54_RS16490	0.60	+0.0
3,619,570	-		LRK54_RS16490	0.60	-0.2
3,619,570	-		LRK54_RS16490	0.60	-1.9
3,619,570	-		LRK54_RS16490	0.60	+0.3
3,619,570	-		LRK54_RS16490	0.60	+0.5
3,619,570	-		LRK54_RS16490	0.60	-0.6
3,619,570	-		LRK54_RS16490	0.60	+2.2
3,619,570	-		LRK54_RS16490	0.60	-0.7
3,619,674	+		LRK54_RS16490	0.76	-0.3
3,619,675	-		LRK54_RS16490	0.76	+1.3
3,619,776	+				+0.5
3,619,776	+				-1.6
3,619,776	+				-0.7
3,619,776	+				+4.4
3,619,776	+				-2.1
3,619,777	-				-0.5
3,619,777	-				-0.9
3,619,836	+				+0.1
3,619,836	+				-2.3
3,619,836	+				-0.2
3,619,836	+				+1.1
3,619,837	-				+0.5
3,619,837	-				+0.3
3,619,837	-				+0.3
3,619,837	-				+0.1
3,619,837	-				+2.8
3,619,837	-				-0.3
3,619,837	-				+1.8
3,619,837	-				-0.6
3,619,837	-				-2.3
3,619,837	-				-0.7
3,619,837	-				+0.2
3,619,837	-				+0.5
3,620,097	+		LRK54_RS16495	0.17	-2.0
3,620,098	-		LRK54_RS16495	0.17	-1.2