Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08995

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03885 and MMP_RS03890 are separated by 9 nucleotidesMMP_RS03890 and MMP_RS08995 are separated by 2 nucleotidesMMP_RS08995 and MMP_RS09000 are separated by 12 nucleotidesMMP_RS09000 and MMP_RS03895 are separated by 332 nucleotidesMMP_RS03895 and MMP_RS03900 are separated by 10 nucleotides MMP_RS03885: MMP_RS03885 - tyrosine-type recombinase/integrase, at 737,294 to 738,268 _RS03885 MMP_RS03890: MMP_RS03890 - DUF2540 domain-containing protein, at 738,278 to 738,538 _RS03890 MMP_RS08995: MMP_RS08995 - hypothetical protein, at 738,541 to 738,699 _RS08995 MMP_RS09000: MMP_RS09000 - hypothetical protein, at 738,712 to 738,867 _RS09000 MMP_RS03895: MMP_RS03895 - hypothetical protein, at 739,200 to 739,430 _RS03895 MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447 _RS03900 Position (kb) 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 737.626 kb on + strand, within MMP_RS03885at 737.690 kb on + strand, within MMP_RS03885at 737.734 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.878 kb on + strand, within MMP_RS03885at 738.065 kb on - strand, within MMP_RS03885at 738.192 kb on - strandat 738.193 kb on + strandat 738.273 kb on + strandat 738.290 kb on - strandat 738.330 kb on + strand, within MMP_RS03890at 738.435 kb on + strand, within MMP_RS03890at 738.457 kb on - strand, within MMP_RS03890at 738.464 kb on - strand, within MMP_RS03890at 738.470 kb on + strand, within MMP_RS03890at 738.473 kb on - strand, within MMP_RS03890at 738.474 kb on + strand, within MMP_RS03890at 738.524 kb on - strandat 738.539 kb on + strandat 738.543 kb on + strandat 738.595 kb on + strand, within MMP_RS08995at 739.090 kb on - strandat 739.211 kb on - strandat 739.213 kb on - strandat 739.257 kb on + strand, within MMP_RS03895at 739.308 kb on - strand, within MMP_RS03895

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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737,626 + MMP_RS03885 0.34 -1.2
737,690 + MMP_RS03885 0.41 +0.4
737,734 + MMP_RS03885 0.45 +0.2
737,852 + MMP_RS03885 0.57 -1.2
737,852 + MMP_RS03885 0.57 -2.6
737,852 + MMP_RS03885 0.57 +1.1
737,853 - MMP_RS03885 0.57 -0.4
737,853 - MMP_RS03885 0.57 +0.3
737,853 - MMP_RS03885 0.57 -0.3
737,854 + MMP_RS03885 0.57 -3.7
737,854 + MMP_RS03885 0.57 +1.3
737,854 + MMP_RS03885 0.57 +1.0
737,878 + MMP_RS03885 0.60 -0.3
738,065 - MMP_RS03885 0.79 +2.1
738,192 - -1.1
738,193 + +1.3
738,273 + +0.3
738,290 - -0.4
738,330 + MMP_RS03890 0.20 +0.3
738,435 + MMP_RS03890 0.60 -0.5
738,457 - MMP_RS03890 0.69 -0.3
738,464 - MMP_RS03890 0.71 -0.4
738,470 + MMP_RS03890 0.74 +0.2
738,473 - MMP_RS03890 0.75 -1.3
738,474 + MMP_RS03890 0.75 -0.0
738,524 - -1.8
738,539 + -0.2
738,543 + -0.5
738,595 + MMP_RS08995 0.34 -1.4
739,090 - +1.0
739,211 - -1.8
739,213 - -1.3
739,257 + MMP_RS03895 0.25 +0.2
739,308 - MMP_RS03895 0.47 -1.2

Or see this region's nucleotide sequence