Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03885 and MMP_RS03890 are separated by 9 nucleotides MMP_RS03890 and MMP_RS08995 are separated by 2 nucleotides MMP_RS08995 and MMP_RS09000 are separated by 12 nucleotides MMP_RS09000 and MMP_RS03895 are separated by 332 nucleotides MMP_RS03895 and MMP_RS03900 are separated by 10 nucleotides
MMP_RS03885: MMP_RS03885 - tyrosine-type recombinase/integrase, at 737,294 to 738,268
_RS03885
MMP_RS03890: MMP_RS03890 - DUF2540 domain-containing protein, at 738,278 to 738,538
_RS03890
MMP_RS08995: MMP_RS08995 - hypothetical protein, at 738,541 to 738,699
_RS08995
MMP_RS09000: MMP_RS09000 - hypothetical protein, at 738,712 to 738,867
_RS09000
MMP_RS03895: MMP_RS03895 - hypothetical protein, at 739,200 to 739,430
_RS03895
MMP_RS03900: MMP_RS03900 - minichromosome maintenance protein MCM, at 739,441 to 741,447
_RS03900
Position (kb) 738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 737.626 kb on + strand, within MMP_RS03885 at 737.690 kb on + strand, within MMP_RS03885 at 737.734 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.852 kb on + strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.853 kb on - strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.854 kb on + strand, within MMP_RS03885 at 737.878 kb on + strand, within MMP_RS03885 at 738.065 kb on - strand, within MMP_RS03885 at 738.192 kb on - strand at 738.193 kb on + strand at 738.273 kb on + strand at 738.290 kb on - strand at 738.330 kb on + strand, within MMP_RS03890 at 738.435 kb on + strand, within MMP_RS03890 at 738.457 kb on - strand, within MMP_RS03890 at 738.464 kb on - strand, within MMP_RS03890 at 738.470 kb on + strand, within MMP_RS03890 at 738.473 kb on - strand, within MMP_RS03890 at 738.474 kb on + strand, within MMP_RS03890 at 738.524 kb on - strand at 738.539 kb on + strand at 738.543 kb on + strand at 738.595 kb on + strand, within MMP_RS08995 at 739.090 kb on - strand at 739.211 kb on - strand at 739.213 kb on - strand at 739.257 kb on + strand, within MMP_RS03895 at 739.308 kb on - strand, within MMP_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 737,626 + MMP_RS03885 0.34 -1.2 737,690 + MMP_RS03885 0.41 +0.4 737,734 + MMP_RS03885 0.45 +0.2 737,852 + MMP_RS03885 0.57 -1.2 737,852 + MMP_RS03885 0.57 -2.6 737,852 + MMP_RS03885 0.57 +1.1 737,853 - MMP_RS03885 0.57 -0.4 737,853 - MMP_RS03885 0.57 +0.3 737,853 - MMP_RS03885 0.57 -0.3 737,854 + MMP_RS03885 0.57 -3.7 737,854 + MMP_RS03885 0.57 +1.3 737,854 + MMP_RS03885 0.57 +1.0 737,878 + MMP_RS03885 0.60 -0.3 738,065 - MMP_RS03885 0.79 +2.1 738,192 - -1.1 738,193 + +1.3 738,273 + +0.3 738,290 - -0.4 738,330 + MMP_RS03890 0.20 +0.3 738,435 + MMP_RS03890 0.60 -0.5 738,457 - MMP_RS03890 0.69 -0.3 738,464 - MMP_RS03890 0.71 -0.4 738,470 + MMP_RS03890 0.74 +0.2 738,473 - MMP_RS03890 0.75 -1.3 738,474 + MMP_RS03890 0.75 -0.0 738,524 - -1.8 738,539 + -0.2 738,543 + -0.5 738,595 + MMP_RS08995 0.34 -1.4 739,090 - +1.0 739,211 - -1.8 739,213 - -1.3 739,257 + MMP_RS03895 0.25 +0.2 739,308 - MMP_RS03895 0.47 -1.2
Or see this region's nucleotide sequence