Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08540

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08535 and MMP_RS08540 are separated by 52 nucleotidesMMP_RS08540 and MMP_RS08545 are separated by 159 nucleotides MMP_RS08535: MMP_RS08535 - bis-aminopropyl spermidine synthase family protein, at 1,601,691 to 1,602,863 _RS08535 MMP_RS08540: MMP_RS08540 - 30S ribosomal protein S8e, at 1,602,916 to 1,603,302 _RS08540 MMP_RS08545: MMP_RS08545 - aspartate carbamoyltransferase, at 1,603,462 to 1,604,370 _RS08545 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1602.002 kb on - strand, within MMP_RS08535at 1602.003 kb on + strand, within MMP_RS08535at 1602.009 kb on + strand, within MMP_RS08535at 1602.009 kb on + strand, within MMP_RS08535at 1602.303 kb on + strand, within MMP_RS08535at 1602.353 kb on - strand, within MMP_RS08535at 1602.354 kb on + strand, within MMP_RS08535at 1602.354 kb on + strand, within MMP_RS08535at 1602.436 kb on + strand, within MMP_RS08535at 1602.436 kb on + strand, within MMP_RS08535at 1602.437 kb on - strand, within MMP_RS08535at 1602.438 kb on + strand, within MMP_RS08535at 1602.438 kb on + strand, within MMP_RS08535at 1602.438 kb on + strand, within MMP_RS08535at 1602.504 kb on - strand, within MMP_RS08535at 1602.567 kb on + strand, within MMP_RS08535at 1602.582 kb on - strand, within MMP_RS08535at 1602.769 kb on - strandat 1602.903 kb on - strandat 1602.917 kb on - strandat 1602.918 kb on + strandat 1602.928 kb on - strandat 1602.929 kb on + strandat 1603.073 kb on + strandat 1603.230 kb on - strandat 1603.352 kb on - strandat 1603.355 kb on + strandat 1603.356 kb on - strandat 1603.356 kb on - strandat 1603.357 kb on + strandat 1603.386 kb on - strandat 1603.391 kb on - strandat 1603.392 kb on + strandat 1603.392 kb on + strandat 1603.408 kb on + strandat 1603.665 kb on + strandat 1603.902 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
remove
1,602,002 - MMP_RS08535 0.27 -0.0
1,602,003 + MMP_RS08535 0.27 +0.5
1,602,009 + MMP_RS08535 0.27 +1.4
1,602,009 + MMP_RS08535 0.27 +2.2
1,602,303 + MMP_RS08535 0.52 +0.4
1,602,353 - MMP_RS08535 0.56 +1.8
1,602,354 + MMP_RS08535 0.57 -0.1
1,602,354 + MMP_RS08535 0.57 +1.2
1,602,436 + MMP_RS08535 0.64 +1.8
1,602,436 + MMP_RS08535 0.64 -2.6
1,602,437 - MMP_RS08535 0.64 +1.3
1,602,438 + MMP_RS08535 0.64 -0.4
1,602,438 + MMP_RS08535 0.64 +3.0
1,602,438 + MMP_RS08535 0.64 -3.5
1,602,504 - MMP_RS08535 0.69 +1.2
1,602,567 + MMP_RS08535 0.75 -0.6
1,602,582 - MMP_RS08535 0.76 +1.1
1,602,769 - +0.6
1,602,903 - -0.5
1,602,917 - +0.5
1,602,918 + +0.5
1,602,928 - +4.1
1,602,929 + +3.3
1,603,073 + -0.2
1,603,230 - -0.6
1,603,352 - +0.8
1,603,355 + +1.7
1,603,356 - -0.6
1,603,356 - +2.4
1,603,357 + +1.2
1,603,386 - +1.1
1,603,391 - -0.6
1,603,392 + +0.1
1,603,392 + +0.8
1,603,408 + -0.6
1,603,665 + +2.4
1,603,902 - -0.6

Or see this region's nucleotide sequence