Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08450 and MMP_RS08455 are separated by 9 nucleotides MMP_RS08455 and MMP_RS08460 are separated by 305 nucleotides MMP_RS08460 and MMP_RS08465 are separated by 54 nucleotides
MMP_RS08450: MMP_RS08450 - isopentenyl phosphate kinase family protein, at 1,585,939 to 1,586,712
_RS08450
MMP_RS08455: MMP_RS08455 - multiprotein bridging factor aMBF1, at 1,586,722 to 1,587,198
_RS08455
MMP_RS08460: MMP_RS08460 - proteasome-activating nucleotidase, at 1,587,504 to 1,588,727
_RS08460
MMP_RS08465: MMP_RS08465 - NAD(P)-binding protein, at 1,588,782 to 1,589,972
_RS08465
Position (kb)
1587
1588
1589 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1586.508 kb on + strand at 1586.569 kb on + strand at 1586.711 kb on + strand at 1586.711 kb on + strand at 1586.845 kb on - strand, within MMP_RS08455 at 1587.004 kb on + strand, within MMP_RS08455 at 1587.030 kb on - strand, within MMP_RS08455 at 1587.062 kb on + strand, within MMP_RS08455 at 1587.163 kb on + strand at 1587.203 kb on + strand at 1587.253 kb on - strand at 1587.258 kb on + strand at 1587.330 kb on + strand at 1587.330 kb on + strand at 1587.332 kb on + strand at 1587.333 kb on - strand at 1587.334 kb on + strand at 1587.336 kb on - strand at 1587.337 kb on + strand at 1587.351 kb on + strand at 1587.369 kb on + strand at 1587.376 kb on - strand at 1587.377 kb on + strand at 1587.379 kb on + strand at 1587.463 kb on + strand at 1587.465 kb on + strand at 1587.723 kb on + strand, within MMP_RS08460 at 1587.728 kb on + strand, within MMP_RS08460 at 1587.770 kb on - strand, within MMP_RS08460 at 1588.242 kb on + strand, within MMP_RS08460 at 1588.367 kb on + strand, within MMP_RS08460 at 1588.529 kb on + strand, within MMP_RS08460 at 1588.729 kb on - strand at 1589.275 kb on - strand at 1589.453 kb on - strand at 1589.456 kb on + strand at 1589.461 kb on - strand at 1589.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,586,508 + -1.1 1,586,569 + -0.9 1,586,711 + -1.3 1,586,711 + +1.8 1,586,845 - MMP_RS08455 0.26 -1.0 1,587,004 + MMP_RS08455 0.59 +1.6 1,587,030 - MMP_RS08455 0.65 +1.0 1,587,062 + MMP_RS08455 0.71 -0.7 1,587,163 + -0.1 1,587,203 + -0.6 1,587,253 - +0.2 1,587,258 + -0.7 1,587,330 + -0.5 1,587,330 + -0.1 1,587,332 + +1.9 1,587,333 - -0.9 1,587,334 + +0.5 1,587,336 - +0.1 1,587,337 + -0.4 1,587,351 + -0.3 1,587,369 + +0.2 1,587,376 - -0.1 1,587,377 + +0.5 1,587,379 + +1.3 1,587,463 + +2.1 1,587,465 + -0.9 1,587,723 + MMP_RS08460 0.18 -0.9 1,587,728 + MMP_RS08460 0.18 -0.9 1,587,770 - MMP_RS08460 0.22 -1.8 1,588,242 + MMP_RS08460 0.60 +0.3 1,588,367 + MMP_RS08460 0.71 -1.9 1,588,529 + MMP_RS08460 0.84 +0.4 1,588,729 - -2.6 1,589,275 - -2.2 1,589,453 - +2.0 1,589,456 + -1.1 1,589,461 - -0.5 1,589,726 + -0.9
Or see this region's nucleotide sequence