Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08460

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08450 and MMP_RS08455 are separated by 9 nucleotidesMMP_RS08455 and MMP_RS08460 are separated by 305 nucleotidesMMP_RS08460 and MMP_RS08465 are separated by 54 nucleotides MMP_RS08450: MMP_RS08450 - isopentenyl phosphate kinase family protein, at 1,585,939 to 1,586,712 _RS08450 MMP_RS08455: MMP_RS08455 - multiprotein bridging factor aMBF1, at 1,586,722 to 1,587,198 _RS08455 MMP_RS08460: MMP_RS08460 - proteasome-activating nucleotidase, at 1,587,504 to 1,588,727 _RS08460 MMP_RS08465: MMP_RS08465 - NAD(P)-binding protein, at 1,588,782 to 1,589,972 _RS08465 Position (kb) 1587 1588 1589Strain fitness (log2 ratio) -2 -1 0 1 2at 1586.508 kb on + strandat 1586.569 kb on + strandat 1586.711 kb on + strandat 1586.711 kb on + strandat 1586.845 kb on - strand, within MMP_RS08455at 1587.004 kb on + strand, within MMP_RS08455at 1587.030 kb on - strand, within MMP_RS08455at 1587.062 kb on + strand, within MMP_RS08455at 1587.163 kb on + strandat 1587.203 kb on + strandat 1587.253 kb on - strandat 1587.258 kb on + strandat 1587.330 kb on + strandat 1587.330 kb on + strandat 1587.332 kb on + strandat 1587.333 kb on - strandat 1587.334 kb on + strandat 1587.336 kb on - strandat 1587.337 kb on + strandat 1587.351 kb on + strandat 1587.369 kb on + strandat 1587.376 kb on - strandat 1587.377 kb on + strandat 1587.379 kb on + strandat 1587.463 kb on + strandat 1587.465 kb on + strandat 1587.723 kb on + strand, within MMP_RS08460at 1587.728 kb on + strand, within MMP_RS08460at 1587.770 kb on - strand, within MMP_RS08460at 1588.242 kb on + strand, within MMP_RS08460at 1588.367 kb on + strand, within MMP_RS08460at 1588.529 kb on + strand, within MMP_RS08460at 1588.729 kb on - strandat 1589.275 kb on - strandat 1589.453 kb on - strandat 1589.456 kb on + strandat 1589.461 kb on - strandat 1589.726 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,586,508 + -1.1
1,586,569 + -0.9
1,586,711 + -1.3
1,586,711 + +1.8
1,586,845 - MMP_RS08455 0.26 -1.0
1,587,004 + MMP_RS08455 0.59 +1.6
1,587,030 - MMP_RS08455 0.65 +1.0
1,587,062 + MMP_RS08455 0.71 -0.7
1,587,163 + -0.1
1,587,203 + -0.6
1,587,253 - +0.2
1,587,258 + -0.7
1,587,330 + -0.5
1,587,330 + -0.1
1,587,332 + +1.9
1,587,333 - -0.9
1,587,334 + +0.5
1,587,336 - +0.1
1,587,337 + -0.4
1,587,351 + -0.3
1,587,369 + +0.2
1,587,376 - -0.1
1,587,377 + +0.5
1,587,379 + +1.3
1,587,463 + +2.1
1,587,465 + -0.9
1,587,723 + MMP_RS08460 0.18 -0.9
1,587,728 + MMP_RS08460 0.18 -0.9
1,587,770 - MMP_RS08460 0.22 -1.8
1,588,242 + MMP_RS08460 0.60 +0.3
1,588,367 + MMP_RS08460 0.71 -1.9
1,588,529 + MMP_RS08460 0.84 +0.4
1,588,729 - -2.6
1,589,275 - -2.2
1,589,453 - +2.0
1,589,456 + -1.1
1,589,461 - -0.5
1,589,726 + -0.9

Or see this region's nucleotide sequence