Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08400

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08390 and MMP_RS08395 are separated by 13 nucleotidesMMP_RS08395 and MMP_RS08400 are separated by 113 nucleotidesMMP_RS08400 and MMP_RS08405 are separated by 74 nucleotides MMP_RS08390: MMP_RS08390 - DUF5400 domain-containing protein, at 1,575,947 to 1,576,276 _RS08390 MMP_RS08395: MMP_RS08395 - DsrE family protein, at 1,576,290 to 1,577,105 _RS08395 MMP_RS08400: MMP_RS08400 - MJ0307 family thioredoxin, at 1,577,219 to 1,577,461 _RS08400 MMP_RS08405: MMP_RS08405 - MFS transporter, at 1,577,536 to 1,578,906 _RS08405 Position (kb) 1577 1578Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1576.247 kb on - strandat 1576.247 kb on - strandat 1576.254 kb on + strandat 1576.414 kb on + strand, within MMP_RS08395at 1576.635 kb on + strand, within MMP_RS08395at 1576.638 kb on - strand, within MMP_RS08395at 1576.639 kb on + strand, within MMP_RS08395at 1576.738 kb on + strand, within MMP_RS08395at 1576.899 kb on + strand, within MMP_RS08395at 1577.091 kb on - strandat 1577.357 kb on - strand, within MMP_RS08400at 1577.358 kb on + strand, within MMP_RS08400at 1577.358 kb on + strand, within MMP_RS08400at 1577.484 kb on - strandat 1577.485 kb on + strandat 1577.492 kb on - strandat 1577.503 kb on - strandat 1577.517 kb on - strandat 1577.517 kb on - strandat 1577.519 kb on - strandat 1577.520 kb on + strandat 1577.520 kb on + strandat 1577.843 kb on - strand, within MMP_RS08405at 1577.883 kb on - strand, within MMP_RS08405at 1577.957 kb on + strand, within MMP_RS08405at 1577.957 kb on + strand, within MMP_RS08405at 1577.968 kb on + strand, within MMP_RS08405at 1577.973 kb on + strand, within MMP_RS08405at 1578.021 kb on - strand, within MMP_RS08405at 1578.022 kb on + strand, within MMP_RS08405at 1578.042 kb on - strand, within MMP_RS08405at 1578.058 kb on - strand, within MMP_RS08405at 1578.059 kb on + strand, within MMP_RS08405at 1578.177 kb on - strand, within MMP_RS08405at 1578.300 kb on + strand, within MMP_RS08405

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,576,247 - -1.8
1,576,247 - -1.9
1,576,254 + -0.2
1,576,414 + MMP_RS08395 0.15 +1.0
1,576,635 + MMP_RS08395 0.42 +0.0
1,576,638 - MMP_RS08395 0.43 -1.4
1,576,639 + MMP_RS08395 0.43 -1.2
1,576,738 + MMP_RS08395 0.55 +1.1
1,576,899 + MMP_RS08395 0.75 -2.5
1,577,091 - +0.9
1,577,357 - MMP_RS08400 0.57 -0.3
1,577,358 + MMP_RS08400 0.57 -2.1
1,577,358 + MMP_RS08400 0.57 -1.9
1,577,484 - +0.7
1,577,485 + -1.6
1,577,492 - +0.7
1,577,503 - +0.6
1,577,517 - -0.1
1,577,517 - +0.3
1,577,519 - -3.9
1,577,520 + -0.9
1,577,520 + -2.7
1,577,843 - MMP_RS08405 0.22 -0.7
1,577,883 - MMP_RS08405 0.25 -0.4
1,577,957 + MMP_RS08405 0.31 -0.2
1,577,957 + MMP_RS08405 0.31 +1.3
1,577,968 + MMP_RS08405 0.32 -0.3
1,577,973 + MMP_RS08405 0.32 +1.2
1,578,021 - MMP_RS08405 0.35 -0.9
1,578,022 + MMP_RS08405 0.35 +1.0
1,578,042 - MMP_RS08405 0.37 -3.4
1,578,058 - MMP_RS08405 0.38 +1.1
1,578,059 + MMP_RS08405 0.38 -0.3
1,578,177 - MMP_RS08405 0.47 -1.7
1,578,300 + MMP_RS08405 0.56 -0.2

Or see this region's nucleotide sequence