Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08200

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08190 and MMP_RS08195 are separated by 11 nucleotidesMMP_RS08195 and MMP_RS08200 are separated by 86 nucleotidesMMP_RS08200 and MMP_RS08205 are separated by 79 nucleotidesMMP_RS08205 and MMP_RS08210 are separated by 19 nucleotides MMP_RS08190: MMP_RS08190 - DUF1743 domain-containing protein, at 1,542,305 to 1,543,210 _RS08190 MMP_RS08195: MMP_RS08195 - hypothetical protein, at 1,543,222 to 1,543,764 _RS08195 MMP_RS08200: MMP_RS08200 - archaeosine synthase subunit alpha, at 1,543,851 to 1,545,467 _RS08200 MMP_RS08205: MMP_RS08205 - stage II sporulation protein M, at 1,545,547 to 1,546,137 _RS08205 MMP_RS08210: MMP_RS08210 - phosphatidylglycerophosphatase A, at 1,546,157 to 1,546,645 _RS08210 Position (kb) 1543 1544 1545 1546Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 1542.963 kb on - strandat 1543.179 kb on + strandat 1543.196 kb on - strandat 1543.201 kb on + strandat 1543.223 kb on - strandat 1543.223 kb on - strandat 1543.224 kb on + strandat 1543.224 kb on + strandat 1543.224 kb on + strandat 1543.244 kb on - strandat 1543.244 kb on - strandat 1543.245 kb on + strandat 1543.277 kb on + strand, within MMP_RS08195at 1543.331 kb on - strand, within MMP_RS08195at 1543.332 kb on + strand, within MMP_RS08195at 1543.403 kb on - strand, within MMP_RS08195at 1543.403 kb on - strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.404 kb on + strand, within MMP_RS08195at 1543.405 kb on - strand, within MMP_RS08195at 1543.405 kb on - strand, within MMP_RS08195at 1543.406 kb on + strand, within MMP_RS08195at 1543.407 kb on - strand, within MMP_RS08195at 1543.407 kb on - strand, within MMP_RS08195at 1543.418 kb on + strand, within MMP_RS08195at 1543.425 kb on - strand, within MMP_RS08195at 1543.515 kb on - strand, within MMP_RS08195at 1543.550 kb on - strand, within MMP_RS08195at 1543.551 kb on + strand, within MMP_RS08195at 1543.595 kb on + strand, within MMP_RS08195at 1543.754 kb on - strandat 1543.947 kb on + strandat 1544.036 kb on - strand, within MMP_RS08200at 1544.178 kb on - strand, within MMP_RS08200at 1544.286 kb on - strand, within MMP_RS08200at 1544.287 kb on + strand, within MMP_RS08200at 1544.317 kb on + strand, within MMP_RS08200at 1544.390 kb on + strand, within MMP_RS08200at 1544.409 kb on - strand, within MMP_RS08200at 1544.409 kb on - strand, within MMP_RS08200at 1544.413 kb on + strand, within MMP_RS08200at 1544.418 kb on - strand, within MMP_RS08200at 1544.465 kb on + strand, within MMP_RS08200at 1544.475 kb on + strand, within MMP_RS08200at 1544.586 kb on - strand, within MMP_RS08200at 1544.606 kb on - strand, within MMP_RS08200at 1544.606 kb on - strand, within MMP_RS08200at 1544.670 kb on - strand, within MMP_RS08200at 1544.676 kb on - strand, within MMP_RS08200at 1544.677 kb on + strand, within MMP_RS08200at 1544.682 kb on - strand, within MMP_RS08200at 1544.682 kb on - strand, within MMP_RS08200at 1544.683 kb on + strand, within MMP_RS08200at 1544.690 kb on + strand, within MMP_RS08200at 1544.690 kb on - strand, within MMP_RS08200at 1544.690 kb on - strand, within MMP_RS08200at 1544.690 kb on - strand, within MMP_RS08200at 1544.691 kb on + strand, within MMP_RS08200at 1544.691 kb on + strand, within MMP_RS08200at 1544.693 kb on + strand, within MMP_RS08200at 1544.693 kb on + strand, within MMP_RS08200at 1544.702 kb on + strand, within MMP_RS08200at 1544.721 kb on + strand, within MMP_RS08200at 1544.723 kb on + strand, within MMP_RS08200at 1544.723 kb on + strand, within MMP_RS08200at 1544.761 kb on + strand, within MMP_RS08200at 1544.766 kb on - strand, within MMP_RS08200at 1544.792 kb on - strand, within MMP_RS08200at 1544.792 kb on - strand, within MMP_RS08200at 1544.792 kb on - strand, within MMP_RS08200at 1544.793 kb on + strand, within MMP_RS08200at 1544.793 kb on + strand, within MMP_RS08200at 1544.793 kb on + strand, within MMP_RS08200at 1544.793 kb on + strand, within MMP_RS08200at 1544.832 kb on - strand, within MMP_RS08200at 1545.098 kb on + strand, within MMP_RS08200at 1545.100 kb on + strand, within MMP_RS08200at 1545.187 kb on + strand, within MMP_RS08200at 1545.448 kb on - strandat 1545.533 kb on + strandat 1545.541 kb on + strandat 1545.541 kb on + strandat 1545.545 kb on - strandat 1545.546 kb on + strandat 1545.546 kb on + strandat 1545.549 kb on + strandat 1545.578 kb on + strandat 1545.584 kb on + strandat 1545.654 kb on + strand, within MMP_RS08205at 1545.663 kb on + strand, within MMP_RS08205at 1545.809 kb on - strand, within MMP_RS08205at 1545.815 kb on + strand, within MMP_RS08205at 1545.842 kb on + strand, within MMP_RS08205at 1545.864 kb on - strand, within MMP_RS08205at 1545.865 kb on + strand, within MMP_RS08205at 1545.865 kb on + strand, within MMP_RS08205at 1545.866 kb on - strand, within MMP_RS08205at 1545.867 kb on + strand, within MMP_RS08205at 1545.867 kb on + strand, within MMP_RS08205at 1545.867 kb on + strand, within MMP_RS08205at 1545.867 kb on + strand, within MMP_RS08205at 1545.867 kb on + strand, within MMP_RS08205at 1545.870 kb on - strand, within MMP_RS08205at 1545.870 kb on - strand, within MMP_RS08205at 1546.025 kb on + strand, within MMP_RS08205at 1546.084 kb on + strandat 1546.258 kb on - strand, within MMP_RS08210at 1546.278 kb on + strand, within MMP_RS08210

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,542,963 - -1.8
1,543,179 + -1.5
1,543,196 - +0.3
1,543,201 + -0.4
1,543,223 - -0.6
1,543,223 - +1.0
1,543,224 + -0.3
1,543,224 + -0.7
1,543,224 + -0.6
1,543,244 - +7.8
1,543,244 - +6.6
1,543,245 + -0.5
1,543,277 + MMP_RS08195 0.10 -1.6
1,543,331 - MMP_RS08195 0.20 +0.7
1,543,332 + MMP_RS08195 0.20 -0.3
1,543,403 - MMP_RS08195 0.33 -0.7
1,543,403 - MMP_RS08195 0.33 +0.1
1,543,404 + MMP_RS08195 0.34 +0.2
1,543,404 + MMP_RS08195 0.34 -2.0
1,543,404 + MMP_RS08195 0.34 -0.4
1,543,404 + MMP_RS08195 0.34 -2.5
1,543,404 + MMP_RS08195 0.34 -1.7
1,543,404 + MMP_RS08195 0.34 -0.5
1,543,404 + MMP_RS08195 0.34 -0.8
1,543,405 - MMP_RS08195 0.34 -0.4
1,543,405 - MMP_RS08195 0.34 -2.5
1,543,406 + MMP_RS08195 0.34 +0.1
1,543,407 - MMP_RS08195 0.34 -0.7
1,543,407 - MMP_RS08195 0.34 -1.4
1,543,418 + MMP_RS08195 0.36 -0.7
1,543,425 - MMP_RS08195 0.37 -1.3
1,543,515 - MMP_RS08195 0.54 -1.1
1,543,550 - MMP_RS08195 0.60 -1.1
1,543,551 + MMP_RS08195 0.61 -2.1
1,543,595 + MMP_RS08195 0.69 -2.0
1,543,754 - -0.7
1,543,947 + -2.1
1,544,036 - MMP_RS08200 0.11 -0.1
1,544,178 - MMP_RS08200 0.20 +0.5
1,544,286 - MMP_RS08200 0.27 +1.3
1,544,287 + MMP_RS08200 0.27 -1.4
1,544,317 + MMP_RS08200 0.29 -2.1
1,544,390 + MMP_RS08200 0.33 -1.3
1,544,409 - MMP_RS08200 0.35 -2.2
1,544,409 - MMP_RS08200 0.35 -0.9
1,544,413 + MMP_RS08200 0.35 -2.0
1,544,418 - MMP_RS08200 0.35 +0.2
1,544,465 + MMP_RS08200 0.38 -0.4
1,544,475 + MMP_RS08200 0.39 +0.7
1,544,586 - MMP_RS08200 0.45 -0.1
1,544,606 - MMP_RS08200 0.47 -1.7
1,544,606 - MMP_RS08200 0.47 -0.1
1,544,670 - MMP_RS08200 0.51 +0.8
1,544,676 - MMP_RS08200 0.51 +0.3
1,544,677 + MMP_RS08200 0.51 -2.1
1,544,682 - MMP_RS08200 0.51 +0.3
1,544,682 - MMP_RS08200 0.51 -1.6
1,544,683 + MMP_RS08200 0.51 -0.2
1,544,690 + MMP_RS08200 0.52 -0.2
1,544,690 - MMP_RS08200 0.52 +0.2
1,544,690 - MMP_RS08200 0.52 -0.3
1,544,690 - MMP_RS08200 0.52 -2.2
1,544,691 + MMP_RS08200 0.52 -0.1
1,544,691 + MMP_RS08200 0.52 -0.9
1,544,693 + MMP_RS08200 0.52 +0.4
1,544,693 + MMP_RS08200 0.52 -0.5
1,544,702 + MMP_RS08200 0.53 +0.0
1,544,721 + MMP_RS08200 0.54 -0.9
1,544,723 + MMP_RS08200 0.54 -1.2
1,544,723 + MMP_RS08200 0.54 -1.7
1,544,761 + MMP_RS08200 0.56 -0.8
1,544,766 - MMP_RS08200 0.57 -2.0
1,544,792 - MMP_RS08200 0.58 -1.4
1,544,792 - MMP_RS08200 0.58 +0.6
1,544,792 - MMP_RS08200 0.58 -1.8
1,544,793 + MMP_RS08200 0.58 -0.9
1,544,793 + MMP_RS08200 0.58 -2.1
1,544,793 + MMP_RS08200 0.58 -1.0
1,544,793 + MMP_RS08200 0.58 -1.7
1,544,832 - MMP_RS08200 0.61 -0.6
1,545,098 + MMP_RS08200 0.77 -1.8
1,545,100 + MMP_RS08200 0.77 +0.8
1,545,187 + MMP_RS08200 0.83 +2.1
1,545,448 - -0.2
1,545,533 + -1.2
1,545,541 + -2.0
1,545,541 + -1.4
1,545,545 - +1.6
1,545,546 + +0.2
1,545,546 + -0.4
1,545,549 + +0.7
1,545,578 + -2.0
1,545,584 + -0.4
1,545,654 + MMP_RS08205 0.18 +0.1
1,545,663 + MMP_RS08205 0.20 +0.1
1,545,809 - MMP_RS08205 0.44 -1.5
1,545,815 + MMP_RS08205 0.45 +0.2
1,545,842 + MMP_RS08205 0.50 +0.1
1,545,864 - MMP_RS08205 0.54 -0.4
1,545,865 + MMP_RS08205 0.54 +0.9
1,545,865 + MMP_RS08205 0.54 +1.6
1,545,866 - MMP_RS08205 0.54 +0.8
1,545,867 + MMP_RS08205 0.54 -0.2
1,545,867 + MMP_RS08205 0.54 +0.3
1,545,867 + MMP_RS08205 0.54 +0.6
1,545,867 + MMP_RS08205 0.54 -1.0
1,545,867 + MMP_RS08205 0.54 +0.8
1,545,870 - MMP_RS08205 0.55 -1.2
1,545,870 - MMP_RS08205 0.55 +0.2
1,546,025 + MMP_RS08205 0.81 +0.3
1,546,084 + +1.9
1,546,258 - MMP_RS08210 0.21 +0.1
1,546,278 + MMP_RS08210 0.25 +1.2

Or see this region's nucleotide sequence