Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08125

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08115 and MMP_RS08120 are separated by 135 nucleotidesMMP_RS08120 and MMP_RS08125 are separated by 66 nucleotidesMMP_RS08125 and MMP_RS08130 are separated by 119 nucleotides MMP_RS08115: MMP_RS08115 - nicotinamide-nucleotide adenylyltransferase, at 1,528,035 to 1,528,550 _RS08115 MMP_RS08120: MMP_RS08120 - 30S ribosomal protein S15, at 1,528,686 to 1,529,141 _RS08120 MMP_RS08125: MMP_RS08125 - dihydropteroate synthase-like protein, at 1,529,208 to 1,530,779 _RS08125 MMP_RS08130: MMP_RS08130 - IGHMBP2 family helicase, at 1,530,899 to 1,532,800 _RS08130 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1528.229 kb on + strandat 1528.259 kb on + strandat 1528.390 kb on + strandat 1528.390 kb on + strandat 1528.522 kb on - strandat 1528.548 kb on - strandat 1528.562 kb on - strandat 1528.595 kb on - strandat 1528.598 kb on + strandat 1528.599 kb on - strandat 1528.601 kb on - strandat 1528.601 kb on - strandat 1528.681 kb on - strandat 1528.853 kb on - strandat 1528.857 kb on - strandat 1529.068 kb on + strandat 1529.193 kb on - strandat 1529.194 kb on + strandat 1529.205 kb on + strandat 1529.230 kb on - strandat 1529.387 kb on - strandat 1529.475 kb on - strandat 1529.514 kb on - strandat 1529.550 kb on + strandat 1529.565 kb on + strandat 1529.742 kb on + strandat 1530.003 kb on - strandat 1530.009 kb on + strandat 1530.351 kb on + strandat 1530.842 kb on - strandat 1530.861 kb on - strandat 1530.861 kb on - strandat 1530.861 kb on - strandat 1530.862 kb on + strandat 1530.862 kb on + strandat 1530.862 kb on + strandat 1530.862 kb on + strandat 1530.865 kb on - strandat 1530.865 kb on - strandat 1530.865 kb on - strandat 1530.865 kb on - strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.866 kb on + strandat 1530.867 kb on - strandat 1530.867 kb on - strandat 1530.868 kb on + strandat 1530.868 kb on + strandat 1530.880 kb on - strandat 1530.883 kb on - strandat 1530.883 kb on - strandat 1530.883 kb on - strandat 1531.032 kb on - strandat 1531.033 kb on + strandat 1531.038 kb on - strandat 1531.074 kb on + strandat 1531.074 kb on + strandat 1531.080 kb on - strandat 1531.143 kb on - strand, within MMP_RS08130at 1531.148 kb on + strand, within MMP_RS08130at 1531.341 kb on - strand, within MMP_RS08130at 1531.341 kb on - strand, within MMP_RS08130at 1531.341 kb on - strand, within MMP_RS08130at 1531.342 kb on + strand, within MMP_RS08130at 1531.342 kb on + strand, within MMP_RS08130at 1531.345 kb on - strand, within MMP_RS08130at 1531.464 kb on - strand, within MMP_RS08130at 1531.586 kb on + strand, within MMP_RS08130at 1531.593 kb on - strand, within MMP_RS08130at 1531.594 kb on + strand, within MMP_RS08130at 1531.673 kb on - strand, within MMP_RS08130at 1531.723 kb on + strand, within MMP_RS08130

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,528,229 + -1.2
1,528,259 + -0.6
1,528,390 + -1.3
1,528,390 + +0.8
1,528,522 - +0.1
1,528,548 - -0.5
1,528,562 - +0.7
1,528,595 - -0.6
1,528,598 + +2.7
1,528,599 - +1.4
1,528,601 - +1.2
1,528,601 - +0.8
1,528,681 - +1.1
1,528,853 - +2.4
1,528,857 - +0.1
1,529,068 + +1.4
1,529,193 - -1.6
1,529,194 + -0.7
1,529,205 + -0.7
1,529,230 - -1.0
1,529,387 - +0.1
1,529,475 - +0.6
1,529,514 - +1.8
1,529,550 + -1.2
1,529,565 + -2.0
1,529,742 + +1.4
1,530,003 - -0.6
1,530,009 + -0.5
1,530,351 + +0.6
1,530,842 - -0.3
1,530,861 - -1.3
1,530,861 - -1.5
1,530,861 - +0.9
1,530,862 + -1.6
1,530,862 + -0.7
1,530,862 + -2.7
1,530,862 + -0.8
1,530,865 - +0.4
1,530,865 - +0.4
1,530,865 - -0.7
1,530,865 - +0.3
1,530,866 + +0.3
1,530,866 + +0.5
1,530,866 + -1.1
1,530,866 + -1.8
1,530,866 + +1.6
1,530,866 + -1.6
1,530,866 + +0.8
1,530,866 + -2.3
1,530,866 + -0.9
1,530,867 - -1.2
1,530,867 - +1.3
1,530,868 + -0.8
1,530,868 + -2.4
1,530,880 - +0.4
1,530,883 - -1.1
1,530,883 - +0.1
1,530,883 - -1.9
1,531,032 - -2.6
1,531,033 + +1.0
1,531,038 - +0.2
1,531,074 + +1.8
1,531,074 + -0.1
1,531,080 - +1.8
1,531,143 - MMP_RS08130 0.13 +1.0
1,531,148 + MMP_RS08130 0.13 +1.1
1,531,341 - MMP_RS08130 0.23 -0.2
1,531,341 - MMP_RS08130 0.23 -0.5
1,531,341 - MMP_RS08130 0.23 -1.8
1,531,342 + MMP_RS08130 0.23 +0.8
1,531,342 + MMP_RS08130 0.23 +0.4
1,531,345 - MMP_RS08130 0.23 -1.2
1,531,464 - MMP_RS08130 0.30 -3.2
1,531,586 + MMP_RS08130 0.36 -1.5
1,531,593 - MMP_RS08130 0.36 +1.0
1,531,594 + MMP_RS08130 0.37 +0.8
1,531,673 - MMP_RS08130 0.41 +0.3
1,531,723 + MMP_RS08130 0.43 -2.2

Or see this region's nucleotide sequence