Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08115 and MMP_RS08120 are separated by 135 nucleotides MMP_RS08120 and MMP_RS08125 are separated by 66 nucleotides MMP_RS08125 and MMP_RS08130 are separated by 119 nucleotides
MMP_RS08115: MMP_RS08115 - nicotinamide-nucleotide adenylyltransferase, at 1,528,035 to 1,528,550
_RS08115
MMP_RS08120: MMP_RS08120 - 30S ribosomal protein S15, at 1,528,686 to 1,529,141
_RS08120
MMP_RS08125: MMP_RS08125 - dihydropteroate synthase-like protein, at 1,529,208 to 1,530,779
_RS08125
MMP_RS08130: MMP_RS08130 - IGHMBP2 family helicase, at 1,530,899 to 1,532,800
_RS08130
Position (kb)
1529
1530
1531 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1528.229 kb on + strand at 1528.259 kb on + strand at 1528.390 kb on + strand at 1528.390 kb on + strand at 1528.522 kb on - strand at 1528.548 kb on - strand at 1528.562 kb on - strand at 1528.595 kb on - strand at 1528.598 kb on + strand at 1528.599 kb on - strand at 1528.601 kb on - strand at 1528.601 kb on - strand at 1528.681 kb on - strand at 1528.853 kb on - strand at 1528.857 kb on - strand at 1529.068 kb on + strand at 1529.193 kb on - strand at 1529.194 kb on + strand at 1529.205 kb on + strand at 1529.230 kb on - strand at 1529.387 kb on - strand at 1529.475 kb on - strand at 1529.514 kb on - strand at 1529.550 kb on + strand at 1529.565 kb on + strand at 1529.742 kb on + strand at 1530.003 kb on - strand at 1530.009 kb on + strand at 1530.351 kb on + strand at 1530.842 kb on - strand at 1530.861 kb on - strand at 1530.861 kb on - strand at 1530.861 kb on - strand at 1530.862 kb on + strand at 1530.862 kb on + strand at 1530.862 kb on + strand at 1530.862 kb on + strand at 1530.865 kb on - strand at 1530.865 kb on - strand at 1530.865 kb on - strand at 1530.865 kb on - strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.866 kb on + strand at 1530.867 kb on - strand at 1530.867 kb on - strand at 1530.868 kb on + strand at 1530.868 kb on + strand at 1530.880 kb on - strand at 1530.883 kb on - strand at 1530.883 kb on - strand at 1530.883 kb on - strand at 1531.032 kb on - strand at 1531.033 kb on + strand at 1531.038 kb on - strand at 1531.074 kb on + strand at 1531.074 kb on + strand at 1531.080 kb on - strand at 1531.143 kb on - strand, within MMP_RS08130 at 1531.148 kb on + strand, within MMP_RS08130 at 1531.341 kb on - strand, within MMP_RS08130 at 1531.341 kb on - strand, within MMP_RS08130 at 1531.341 kb on - strand, within MMP_RS08130 at 1531.342 kb on + strand, within MMP_RS08130 at 1531.342 kb on + strand, within MMP_RS08130 at 1531.345 kb on - strand, within MMP_RS08130 at 1531.464 kb on - strand, within MMP_RS08130 at 1531.586 kb on + strand, within MMP_RS08130 at 1531.593 kb on - strand, within MMP_RS08130 at 1531.594 kb on + strand, within MMP_RS08130 at 1531.673 kb on - strand, within MMP_RS08130 at 1531.723 kb on + strand, within MMP_RS08130
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,528,229 + -1.2 1,528,259 + -0.6 1,528,390 + -1.3 1,528,390 + +0.8 1,528,522 - +0.1 1,528,548 - -0.5 1,528,562 - +0.7 1,528,595 - -0.6 1,528,598 + +2.7 1,528,599 - +1.4 1,528,601 - +1.2 1,528,601 - +0.8 1,528,681 - +1.1 1,528,853 - +2.4 1,528,857 - +0.1 1,529,068 + +1.4 1,529,193 - -1.6 1,529,194 + -0.7 1,529,205 + -0.7 1,529,230 - -1.0 1,529,387 - +0.1 1,529,475 - +0.6 1,529,514 - +1.8 1,529,550 + -1.2 1,529,565 + -2.0 1,529,742 + +1.4 1,530,003 - -0.6 1,530,009 + -0.5 1,530,351 + +0.6 1,530,842 - -0.3 1,530,861 - -1.3 1,530,861 - -1.5 1,530,861 - +0.9 1,530,862 + -1.6 1,530,862 + -0.7 1,530,862 + -2.7 1,530,862 + -0.8 1,530,865 - +0.4 1,530,865 - +0.4 1,530,865 - -0.7 1,530,865 - +0.3 1,530,866 + +0.3 1,530,866 + +0.5 1,530,866 + -1.1 1,530,866 + -1.8 1,530,866 + +1.6 1,530,866 + -1.6 1,530,866 + +0.8 1,530,866 + -2.3 1,530,866 + -0.9 1,530,867 - -1.2 1,530,867 - +1.3 1,530,868 + -0.8 1,530,868 + -2.4 1,530,880 - +0.4 1,530,883 - -1.1 1,530,883 - +0.1 1,530,883 - -1.9 1,531,032 - -2.6 1,531,033 + +1.0 1,531,038 - +0.2 1,531,074 + +1.8 1,531,074 + -0.1 1,531,080 - +1.8 1,531,143 - MMP_RS08130 0.13 +1.0 1,531,148 + MMP_RS08130 0.13 +1.1 1,531,341 - MMP_RS08130 0.23 -0.2 1,531,341 - MMP_RS08130 0.23 -0.5 1,531,341 - MMP_RS08130 0.23 -1.8 1,531,342 + MMP_RS08130 0.23 +0.8 1,531,342 + MMP_RS08130 0.23 +0.4 1,531,345 - MMP_RS08130 0.23 -1.2 1,531,464 - MMP_RS08130 0.30 -3.2 1,531,586 + MMP_RS08130 0.36 -1.5 1,531,593 - MMP_RS08130 0.36 +1.0 1,531,594 + MMP_RS08130 0.37 +0.8 1,531,673 - MMP_RS08130 0.41 +0.3 1,531,723 + MMP_RS08130 0.43 -2.2
Or see this region's nucleotide sequence