Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07700

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07690 and MMP_RS07695 are separated by 24 nucleotidesMMP_RS07695 and MMP_RS07700 overlap by 4 nucleotidesMMP_RS07700 and MMP_RS07705 are separated by 17 nucleotidesMMP_RS07705 and MMP_RS07710 are separated by 48 nucleotides MMP_RS07690: MMP_RS07690 - phenylalanine--tRNA ligase subunit alpha, at 1,457,002 to 1,458,504 _RS07690 MMP_RS07695: MMP_RS07695 - DUF3236 domain-containing protein, at 1,458,529 to 1,459,008 _RS07695 MMP_RS07700: MMP_RS07700 - DUF1188 domain-containing protein, at 1,459,005 to 1,459,787 _RS07700 MMP_RS07705: MMP_RS07705 - transcriptional regulator, at 1,459,805 to 1,460,317 _RS07705 MMP_RS07710: MMP_RS07710 - cell division protein FtsZ, at 1,460,366 to 1,461,463 _RS07710 Position (kb) 1459 1460Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12 13at 1458.101 kb on - strandat 1458.439 kb on + strandat 1458.630 kb on + strand, within MMP_RS07695at 1458.654 kb on + strand, within MMP_RS07695at 1458.683 kb on - strand, within MMP_RS07695at 1458.789 kb on + strand, within MMP_RS07695at 1458.818 kb on - strand, within MMP_RS07695at 1458.824 kb on - strand, within MMP_RS07695at 1458.941 kb on - strand, within MMP_RS07695at 1458.942 kb on + strand, within MMP_RS07695at 1459.019 kb on - strandat 1459.108 kb on + strand, within MMP_RS07700at 1459.115 kb on + strand, within MMP_RS07700at 1459.131 kb on + strand, within MMP_RS07700at 1459.144 kb on - strand, within MMP_RS07700at 1459.170 kb on - strand, within MMP_RS07700at 1459.208 kb on - strand, within MMP_RS07700at 1459.234 kb on - strand, within MMP_RS07700at 1459.235 kb on + strand, within MMP_RS07700at 1459.297 kb on - strand, within MMP_RS07700at 1459.347 kb on + strand, within MMP_RS07700at 1459.370 kb on + strand, within MMP_RS07700at 1459.449 kb on + strand, within MMP_RS07700at 1459.452 kb on + strand, within MMP_RS07700at 1459.511 kb on - strand, within MMP_RS07700at 1459.555 kb on - strand, within MMP_RS07700at 1459.556 kb on + strand, within MMP_RS07700at 1459.556 kb on + strand, within MMP_RS07700at 1459.589 kb on + strand, within MMP_RS07700at 1459.699 kb on - strand, within MMP_RS07700at 1459.722 kb on - strandat 1459.722 kb on - strandat 1459.763 kb on + strandat 1459.763 kb on + strandat 1459.841 kb on + strandat 1459.861 kb on - strand, within MMP_RS07705at 1459.907 kb on - strand, within MMP_RS07705at 1459.908 kb on + strand, within MMP_RS07705at 1459.954 kb on + strand, within MMP_RS07705at 1459.956 kb on + strand, within MMP_RS07705at 1459.984 kb on - strand, within MMP_RS07705at 1459.985 kb on + strand, within MMP_RS07705at 1460.055 kb on + strand, within MMP_RS07705at 1460.122 kb on - strand, within MMP_RS07705at 1460.182 kb on + strand, within MMP_RS07705at 1460.188 kb on - strand, within MMP_RS07705at 1460.188 kb on - strand, within MMP_RS07705at 1460.189 kb on + strand, within MMP_RS07705at 1460.192 kb on + strand, within MMP_RS07705at 1460.192 kb on + strand, within MMP_RS07705at 1460.208 kb on + strand, within MMP_RS07705at 1460.208 kb on + strand, within MMP_RS07705at 1460.294 kb on - strandat 1460.294 kb on - strandat 1460.294 kb on - strandat 1460.317 kb on - strandat 1460.328 kb on - strandat 1460.359 kb on + strandat 1460.369 kb on - strandat 1460.374 kb on - strandat 1460.377 kb on + strandat 1460.467 kb on - strandat 1460.490 kb on + strand, within MMP_RS07710at 1460.536 kb on - strand, within MMP_RS07710at 1460.550 kb on + strand, within MMP_RS07710at 1460.566 kb on - strand, within MMP_RS07710at 1460.587 kb on - strand, within MMP_RS07710at 1460.664 kb on + strand, within MMP_RS07710at 1460.679 kb on + strand, within MMP_RS07710at 1460.683 kb on - strand, within MMP_RS07710at 1460.694 kb on + strand, within MMP_RS07710at 1460.717 kb on + strand, within MMP_RS07710

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,458,101 - -1.3
1,458,439 + -0.8
1,458,630 + MMP_RS07695 0.21 -1.7
1,458,654 + MMP_RS07695 0.26 -1.0
1,458,683 - MMP_RS07695 0.32 -1.4
1,458,789 + MMP_RS07695 0.54 -0.3
1,458,818 - MMP_RS07695 0.60 -1.1
1,458,824 - MMP_RS07695 0.61 -0.8
1,458,941 - MMP_RS07695 0.86 -0.9
1,458,942 + MMP_RS07695 0.86 -2.8
1,459,019 - -1.0
1,459,108 + MMP_RS07700 0.13 -1.0
1,459,115 + MMP_RS07700 0.14 -1.5
1,459,131 + MMP_RS07700 0.16 -1.9
1,459,144 - MMP_RS07700 0.18 -1.6
1,459,170 - MMP_RS07700 0.21 -2.2
1,459,208 - MMP_RS07700 0.26 -0.6
1,459,234 - MMP_RS07700 0.29 -0.5
1,459,235 + MMP_RS07700 0.29 -4.5
1,459,297 - MMP_RS07700 0.37 -2.4
1,459,347 + MMP_RS07700 0.44 -0.8
1,459,370 + MMP_RS07700 0.47 -1.6
1,459,449 + MMP_RS07700 0.57 -2.2
1,459,452 + MMP_RS07700 0.57 -1.5
1,459,511 - MMP_RS07700 0.65 -1.7
1,459,555 - MMP_RS07700 0.70 -1.7
1,459,556 + MMP_RS07700 0.70 -2.2
1,459,556 + MMP_RS07700 0.70 -1.5
1,459,589 + MMP_RS07700 0.75 -2.0
1,459,699 - MMP_RS07700 0.89 -1.5
1,459,722 - -2.5
1,459,722 - +0.4
1,459,763 + -0.7
1,459,763 + -3.4
1,459,841 + +9.0
1,459,861 - MMP_RS07705 0.11 +8.6
1,459,907 - MMP_RS07705 0.20 +8.3
1,459,908 + MMP_RS07705 0.20 +9.8
1,459,954 + MMP_RS07705 0.29 +10.1
1,459,956 + MMP_RS07705 0.29 +7.3
1,459,984 - MMP_RS07705 0.35 +9.7
1,459,985 + MMP_RS07705 0.35 +7.7
1,460,055 + MMP_RS07705 0.49 +8.9
1,460,122 - MMP_RS07705 0.62 +10.2
1,460,182 + MMP_RS07705 0.73 +8.2
1,460,188 - MMP_RS07705 0.75 +8.6
1,460,188 - MMP_RS07705 0.75 +9.0
1,460,189 + MMP_RS07705 0.75 +9.9
1,460,192 + MMP_RS07705 0.75 +10.9
1,460,192 + MMP_RS07705 0.75 +8.6
1,460,208 + MMP_RS07705 0.79 +9.2
1,460,208 + MMP_RS07705 0.79 +11.2
1,460,294 - +9.0
1,460,294 - +9.1
1,460,294 - +9.7
1,460,317 - +8.8
1,460,328 - +9.5
1,460,359 + +10.2
1,460,369 - +7.1
1,460,374 - +8.9
1,460,377 + +12.9
1,460,467 - +11.6
1,460,490 + MMP_RS07710 0.11 +10.3
1,460,536 - MMP_RS07710 0.15 +1.3
1,460,550 + MMP_RS07710 0.17 -0.9
1,460,566 - MMP_RS07710 0.18 +3.0
1,460,587 - MMP_RS07710 0.20 +5.6
1,460,664 + MMP_RS07710 0.27 +6.8
1,460,679 + MMP_RS07710 0.29 +9.8
1,460,683 - MMP_RS07710 0.29 +10.1
1,460,694 + MMP_RS07710 0.30 +3.8
1,460,717 + MMP_RS07710 0.32 +10.5

Or see this region's nucleotide sequence