Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07365

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07360 and MMP_RS07365 are separated by 21 nucleotidesMMP_RS07365 and MMP_RS07370 are separated by 84 nucleotides MMP_RS07360: MMP_RS07360 - TrkH family potassium uptake protein, at 1,401,518 to 1,402,954 _RS07360 MMP_RS07365: MMP_RS07365 - 2-phosphoglycerate kinase, at 1,402,976 to 1,403,914 _RS07365 MMP_RS07370: MMP_RS07370 - adenylosuccinate synthetase, at 1,403,999 to 1,405,015 _RS07370 Position (kb) 1402 1403 1404Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1402.015 kb on - strandat 1402.032 kb on + strandat 1402.139 kb on - strandat 1402.234 kb on + strandat 1402.292 kb on - strandat 1402.293 kb on + strandat 1402.324 kb on - strandat 1402.361 kb on - strandat 1402.362 kb on + strandat 1402.393 kb on + strandat 1402.476 kb on - strandat 1402.681 kb on + strandat 1403.012 kb on - strandat 1403.032 kb on - strandat 1403.083 kb on - strand, within MMP_RS07365at 1403.119 kb on - strand, within MMP_RS07365at 1403.119 kb on - strand, within MMP_RS07365at 1403.120 kb on + strand, within MMP_RS07365at 1403.120 kb on + strand, within MMP_RS07365at 1403.121 kb on - strand, within MMP_RS07365at 1403.122 kb on + strand, within MMP_RS07365at 1403.122 kb on + strand, within MMP_RS07365at 1403.122 kb on + strand, within MMP_RS07365at 1403.138 kb on - strand, within MMP_RS07365at 1403.183 kb on - strand, within MMP_RS07365at 1403.201 kb on + strand, within MMP_RS07365at 1403.231 kb on - strand, within MMP_RS07365at 1403.285 kb on - strand, within MMP_RS07365at 1403.298 kb on + strand, within MMP_RS07365at 1403.298 kb on + strand, within MMP_RS07365at 1403.315 kb on - strand, within MMP_RS07365at 1403.344 kb on - strand, within MMP_RS07365at 1403.344 kb on - strand, within MMP_RS07365at 1403.345 kb on + strand, within MMP_RS07365at 1403.345 kb on + strand, within MMP_RS07365at 1403.349 kb on + strand, within MMP_RS07365at 1403.349 kb on + strand, within MMP_RS07365at 1403.351 kb on + strand, within MMP_RS07365at 1403.446 kb on - strand, within MMP_RS07365at 1403.464 kb on - strand, within MMP_RS07365at 1403.466 kb on - strand, within MMP_RS07365at 1403.492 kb on - strand, within MMP_RS07365at 1403.507 kb on + strand, within MMP_RS07365at 1403.626 kb on - strand, within MMP_RS07365at 1403.632 kb on - strand, within MMP_RS07365at 1403.633 kb on + strand, within MMP_RS07365at 1403.709 kb on - strand, within MMP_RS07365at 1403.751 kb on + strand, within MMP_RS07365at 1403.766 kb on + strand, within MMP_RS07365at 1403.918 kb on + strandat 1403.953 kb on + strandat 1403.955 kb on - strandat 1403.955 kb on - strandat 1403.955 kb on - strandat 1403.955 kb on - strandat 1403.956 kb on + strandat 1403.957 kb on - strandat 1403.957 kb on - strandat 1403.957 kb on - strandat 1403.957 kb on - strandat 1403.957 kb on - strandat 1403.958 kb on + strandat 1403.958 kb on + strandat 1403.958 kb on + strandat 1403.960 kb on + strandat 1403.962 kb on - strandat 1403.962 kb on - strandat 1403.963 kb on + strandat 1403.963 kb on + strandat 1403.981 kb on - strandat 1404.176 kb on - strandat 1404.177 kb on + strandat 1404.437 kb on + strandat 1404.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,402,015 - +0.1
1,402,032 + +0.7
1,402,139 - +0.7
1,402,234 + +0.5
1,402,292 - +2.3
1,402,293 + +2.3
1,402,324 - -0.3
1,402,361 - +0.6
1,402,362 + +2.3
1,402,393 + +1.0
1,402,476 - -0.0
1,402,681 + -1.5
1,403,012 - +0.1
1,403,032 - -0.9
1,403,083 - MMP_RS07365 0.11 -1.3
1,403,119 - MMP_RS07365 0.15 -1.4
1,403,119 - MMP_RS07365 0.15 -0.5
1,403,120 + MMP_RS07365 0.15 +2.1
1,403,120 + MMP_RS07365 0.15 -0.1
1,403,121 - MMP_RS07365 0.15 +0.6
1,403,122 + MMP_RS07365 0.16 +0.5
1,403,122 + MMP_RS07365 0.16 -1.6
1,403,122 + MMP_RS07365 0.16 -1.9
1,403,138 - MMP_RS07365 0.17 -2.6
1,403,183 - MMP_RS07365 0.22 -1.5
1,403,201 + MMP_RS07365 0.24 -1.4
1,403,231 - MMP_RS07365 0.27 -1.2
1,403,285 - MMP_RS07365 0.33 -0.7
1,403,298 + MMP_RS07365 0.34 -0.9
1,403,298 + MMP_RS07365 0.34 +0.6
1,403,315 - MMP_RS07365 0.36 -2.0
1,403,344 - MMP_RS07365 0.39 +0.7
1,403,344 - MMP_RS07365 0.39 -1.0
1,403,345 + MMP_RS07365 0.39 -0.6
1,403,345 + MMP_RS07365 0.39 -0.7
1,403,349 + MMP_RS07365 0.40 -0.1
1,403,349 + MMP_RS07365 0.40 -1.2
1,403,351 + MMP_RS07365 0.40 -1.0
1,403,446 - MMP_RS07365 0.50 -0.3
1,403,464 - MMP_RS07365 0.52 -0.8
1,403,466 - MMP_RS07365 0.52 -1.8
1,403,492 - MMP_RS07365 0.55 -1.6
1,403,507 + MMP_RS07365 0.57 -1.2
1,403,626 - MMP_RS07365 0.69 -0.5
1,403,632 - MMP_RS07365 0.70 +0.3
1,403,633 + MMP_RS07365 0.70 -2.8
1,403,709 - MMP_RS07365 0.78 -2.4
1,403,751 + MMP_RS07365 0.83 -1.1
1,403,766 + MMP_RS07365 0.84 +1.1
1,403,918 + -1.7
1,403,953 + -1.3
1,403,955 - -1.7
1,403,955 - -2.0
1,403,955 - +0.7
1,403,955 - -2.2
1,403,956 + -1.8
1,403,957 - -3.1
1,403,957 - -0.9
1,403,957 - -1.5
1,403,957 - +0.9
1,403,957 - -0.7
1,403,958 + +0.0
1,403,958 + -1.4
1,403,958 + -1.5
1,403,960 + -2.5
1,403,962 - -0.5
1,403,962 - -0.1
1,403,963 + -1.1
1,403,963 + -2.2
1,403,981 - -1.0
1,404,176 - +0.7
1,404,177 + +2.3
1,404,437 + +0.9
1,404,887 + -0.0

Or see this region's nucleotide sequence