Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07345

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07335 and MMP_RS07340 are separated by 23 nucleotidesMMP_RS07340 and MMP_RS07345 are separated by 3 nucleotidesMMP_RS07345 and MMP_RS07350 are separated by 72 nucleotidesMMP_RS07350 and MMP_RS07355 are separated by 54 nucleotidesMMP_RS07355 and MMP_RS07360 are separated by 71 nucleotides MMP_RS07335: MMP_RS07335 - tRNA (cytidine(56)-2'-O)-methyltransferase, at 1,398,277 to 1,398,816 _RS07335 MMP_RS07340: MMP_RS07340 - dCTP deaminase, at 1,398,840 to 1,399,460 _RS07340 MMP_RS07345: MMP_RS07345 - glycine synthesis protein GlyXL (from data), at 1,399,464 to 1,400,840 _RS07345 MMP_RS07350: MMP_RS07350 - preprotein translocase subunit Sec61beta, at 1,400,913 to 1,401,074 _RS07350 MMP_RS07355: MMP_RS07355 - transcription factor S, at 1,401,129 to 1,401,446 _RS07355 MMP_RS07360: MMP_RS07360 - TrkH family potassium uptake protein, at 1,401,518 to 1,402,954 _RS07360 Position (kb) 1399 1400 1401Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1398.512 kb on - strand, within MMP_RS07335at 1398.513 kb on + strand, within MMP_RS07335at 1398.515 kb on - strand, within MMP_RS07335at 1398.516 kb on + strand, within MMP_RS07335at 1398.523 kb on + strand, within MMP_RS07335at 1398.652 kb on - strand, within MMP_RS07335at 1398.838 kb on + strandat 1398.838 kb on + strandat 1398.847 kb on - strandat 1398.871 kb on + strandat 1399.001 kb on + strandat 1399.525 kb on - strandat 1399.526 kb on + strandat 1399.526 kb on + strandat 1399.532 kb on - strandat 1399.533 kb on + strandat 1399.663 kb on + strand, within MMP_RS07345at 1399.679 kb on + strand, within MMP_RS07345at 1399.861 kb on + strand, within MMP_RS07345at 1399.861 kb on + strand, within MMP_RS07345at 1399.959 kb on + strand, within MMP_RS07345at 1399.965 kb on - strand, within MMP_RS07345at 1399.995 kb on + strand, within MMP_RS07345at 1400.292 kb on + strand, within MMP_RS07345at 1400.337 kb on + strand, within MMP_RS07345at 1400.451 kb on + strand, within MMP_RS07345at 1400.465 kb on - strand, within MMP_RS07345at 1400.466 kb on + strand, within MMP_RS07345at 1400.673 kb on + strand, within MMP_RS07345at 1400.889 kb on + strandat 1400.890 kb on - strandat 1400.891 kb on + strandat 1400.965 kb on + strand, within MMP_RS07350at 1400.965 kb on + strand, within MMP_RS07350at 1400.989 kb on - strand, within MMP_RS07350at 1401.112 kb on + strandat 1401.127 kb on + strandat 1401.131 kb on + strandat 1401.131 kb on + strandat 1401.137 kb on + strandat 1401.150 kb on + strandat 1401.255 kb on - strand, within MMP_RS07355at 1401.417 kb on + strandat 1401.479 kb on + strandat 1401.481 kb on + strandat 1401.481 kb on + strandat 1401.512 kb on - strandat 1401.574 kb on + strandat 1401.796 kb on + strandat 1401.811 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,398,512 - MMP_RS07335 0.44 -1.5
1,398,513 + MMP_RS07335 0.44 +0.5
1,398,515 - MMP_RS07335 0.44 +0.5
1,398,516 + MMP_RS07335 0.44 +2.1
1,398,523 + MMP_RS07335 0.46 +0.6
1,398,652 - MMP_RS07335 0.69 -1.9
1,398,838 + -1.6
1,398,838 + +0.3
1,398,847 - -0.5
1,398,871 + -1.2
1,399,001 + -1.0
1,399,525 - -2.7
1,399,526 + -2.9
1,399,526 + -0.2
1,399,532 - -0.9
1,399,533 + -1.4
1,399,663 + MMP_RS07345 0.14 -0.5
1,399,679 + MMP_RS07345 0.16 +0.3
1,399,861 + MMP_RS07345 0.29 -1.5
1,399,861 + MMP_RS07345 0.29 -1.8
1,399,959 + MMP_RS07345 0.36 -1.7
1,399,965 - MMP_RS07345 0.36 -1.8
1,399,995 + MMP_RS07345 0.39 -0.5
1,400,292 + MMP_RS07345 0.60 -3.0
1,400,337 + MMP_RS07345 0.63 -2.3
1,400,451 + MMP_RS07345 0.72 -4.8
1,400,465 - MMP_RS07345 0.73 -0.7
1,400,466 + MMP_RS07345 0.73 -1.0
1,400,673 + MMP_RS07345 0.88 +0.7
1,400,889 + +3.3
1,400,890 - +0.1
1,400,891 + -0.2
1,400,965 + MMP_RS07350 0.32 -0.8
1,400,965 + MMP_RS07350 0.32 -1.0
1,400,989 - MMP_RS07350 0.47 -1.0
1,401,112 + -1.7
1,401,127 + +1.3
1,401,131 + -2.5
1,401,131 + -1.6
1,401,137 + +1.0
1,401,150 + -0.9
1,401,255 - MMP_RS07355 0.40 +1.5
1,401,417 + -0.2
1,401,479 + -1.2
1,401,481 + +0.6
1,401,481 + -1.8
1,401,512 - -1.2
1,401,574 + +1.3
1,401,796 + +1.9
1,401,811 - +2.3

Or see this region's nucleotide sequence