Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07330

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07325 and MMP_RS07330 are separated by 96 nucleotidesMMP_RS07330 and MMP_RS07335 are separated by 112 nucleotidesMMP_RS07335 and MMP_RS07340 are separated by 23 nucleotides MMP_RS07325: MMP_RS07325 - glycosyl transferase, at 1,394,610 to 1,395,509 _RS07325 MMP_RS07330: MMP_RS07330 - membrane protein, at 1,395,606 to 1,398,164 _RS07330 MMP_RS07335: MMP_RS07335 - tRNA (cytidine(56)-2'-O)-methyltransferase, at 1,398,277 to 1,398,816 _RS07335 MMP_RS07340: MMP_RS07340 - dCTP deaminase, at 1,398,840 to 1,399,460 _RS07340 Position (kb) 1395 1396 1397 1398 1399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1394.644 kb on + strandat 1394.692 kb on + strandat 1394.702 kb on + strandat 1394.799 kb on - strandat 1394.985 kb on - strandat 1394.986 kb on + strandat 1395.039 kb on + strandat 1395.421 kb on - strandat 1395.490 kb on + strandat 1395.523 kb on + strandat 1395.523 kb on + strandat 1395.523 kb on + strandat 1395.528 kb on + strandat 1395.554 kb on - strandat 1395.555 kb on + strandat 1395.558 kb on - strandat 1395.558 kb on - strandat 1395.559 kb on + strandat 1395.560 kb on - strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.563 kb on + strandat 1395.564 kb on - strandat 1395.564 kb on - strandat 1395.564 kb on - strandat 1395.565 kb on + strandat 1395.565 kb on + strandat 1395.565 kb on + strandat 1395.565 kb on + strandat 1395.758 kb on - strandat 1395.758 kb on - strandat 1395.787 kb on + strandat 1395.787 kb on + strandat 1395.960 kb on + strand, within MMP_RS07330at 1396.053 kb on + strand, within MMP_RS07330at 1396.106 kb on - strand, within MMP_RS07330at 1396.106 kb on - strand, within MMP_RS07330at 1396.107 kb on + strand, within MMP_RS07330at 1396.107 kb on + strand, within MMP_RS07330at 1396.157 kb on + strand, within MMP_RS07330at 1396.158 kb on - strand, within MMP_RS07330at 1396.158 kb on - strand, within MMP_RS07330at 1396.159 kb on + strand, within MMP_RS07330at 1396.159 kb on + strand, within MMP_RS07330at 1396.160 kb on - strand, within MMP_RS07330at 1396.201 kb on - strand, within MMP_RS07330at 1396.213 kb on - strand, within MMP_RS07330at 1396.222 kb on - strand, within MMP_RS07330at 1396.311 kb on - strand, within MMP_RS07330at 1396.370 kb on + strand, within MMP_RS07330at 1396.372 kb on - strand, within MMP_RS07330at 1396.372 kb on - strand, within MMP_RS07330at 1396.373 kb on + strand, within MMP_RS07330at 1396.374 kb on - strand, within MMP_RS07330at 1396.374 kb on - strand, within MMP_RS07330at 1396.383 kb on - strand, within MMP_RS07330at 1396.383 kb on - strand, within MMP_RS07330at 1396.384 kb on + strand, within MMP_RS07330at 1396.394 kb on + strand, within MMP_RS07330at 1396.394 kb on + strand, within MMP_RS07330at 1396.394 kb on + strand, within MMP_RS07330at 1396.439 kb on - strand, within MMP_RS07330at 1396.440 kb on + strand, within MMP_RS07330at 1396.440 kb on + strand, within MMP_RS07330at 1396.445 kb on + strand, within MMP_RS07330at 1396.445 kb on + strand, within MMP_RS07330at 1396.445 kb on + strand, within MMP_RS07330at 1396.445 kb on + strand, within MMP_RS07330at 1396.445 kb on + strand, within MMP_RS07330at 1396.494 kb on + strand, within MMP_RS07330at 1396.496 kb on - strand, within MMP_RS07330at 1396.567 kb on - strand, within MMP_RS07330at 1396.568 kb on + strand, within MMP_RS07330at 1396.568 kb on + strand, within MMP_RS07330at 1396.568 kb on + strand, within MMP_RS07330at 1396.569 kb on - strand, within MMP_RS07330at 1396.570 kb on + strand, within MMP_RS07330at 1396.571 kb on - strand, within MMP_RS07330at 1396.851 kb on + strand, within MMP_RS07330at 1396.882 kb on - strand, within MMP_RS07330at 1396.883 kb on + strand, within MMP_RS07330at 1396.883 kb on + strand, within MMP_RS07330at 1396.883 kb on + strand, within MMP_RS07330at 1396.885 kb on - strand, within MMP_RS07330at 1396.926 kb on + strand, within MMP_RS07330at 1396.951 kb on - strand, within MMP_RS07330at 1396.951 kb on - strand, within MMP_RS07330at 1396.968 kb on - strand, within MMP_RS07330at 1396.969 kb on + strand, within MMP_RS07330at 1396.986 kb on - strand, within MMP_RS07330at 1397.012 kb on + strand, within MMP_RS07330at 1397.023 kb on + strand, within MMP_RS07330at 1397.039 kb on + strand, within MMP_RS07330at 1397.375 kb on - strand, within MMP_RS07330at 1397.391 kb on - strand, within MMP_RS07330at 1397.391 kb on - strand, within MMP_RS07330at 1397.411 kb on + strand, within MMP_RS07330at 1397.439 kb on + strand, within MMP_RS07330at 1397.439 kb on + strand, within MMP_RS07330at 1397.444 kb on + strand, within MMP_RS07330at 1397.462 kb on + strand, within MMP_RS07330at 1397.493 kb on + strand, within MMP_RS07330at 1397.497 kb on - strand, within MMP_RS07330at 1397.589 kb on - strand, within MMP_RS07330at 1397.590 kb on + strand, within MMP_RS07330at 1397.590 kb on + strand, within MMP_RS07330at 1397.606 kb on - strand, within MMP_RS07330at 1397.646 kb on + strand, within MMP_RS07330at 1397.733 kb on + strand, within MMP_RS07330at 1397.742 kb on - strand, within MMP_RS07330at 1397.743 kb on + strand, within MMP_RS07330at 1397.747 kb on + strand, within MMP_RS07330at 1397.753 kb on + strand, within MMP_RS07330at 1397.769 kb on - strand, within MMP_RS07330at 1398.020 kb on - strandat 1398.021 kb on + strandat 1398.136 kb on - strandat 1398.163 kb on + strandat 1398.206 kb on + strandat 1398.291 kb on + strandat 1398.333 kb on - strand, within MMP_RS07335at 1398.348 kb on + strand, within MMP_RS07335at 1398.512 kb on - strand, within MMP_RS07335at 1398.513 kb on + strand, within MMP_RS07335at 1398.515 kb on - strand, within MMP_RS07335at 1398.516 kb on + strand, within MMP_RS07335at 1398.523 kb on + strand, within MMP_RS07335at 1398.652 kb on - strand, within MMP_RS07335at 1398.838 kb on + strandat 1398.838 kb on + strandat 1398.847 kb on - strandat 1398.871 kb on + strandat 1399.001 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,394,644 + -1.0
1,394,692 + +1.5
1,394,702 + +1.3
1,394,799 - -1.2
1,394,985 - -1.5
1,394,986 + -2.2
1,395,039 + -0.9
1,395,421 - -2.5
1,395,490 + +0.7
1,395,523 + -0.9
1,395,523 + -0.9
1,395,523 + +1.9
1,395,528 + +1.7
1,395,554 - -0.2
1,395,555 + +1.8
1,395,558 - -2.2
1,395,558 - +0.1
1,395,559 + -0.2
1,395,560 - -1.6
1,395,561 + -2.1
1,395,561 + -2.9
1,395,561 + +2.3
1,395,561 + -1.6
1,395,563 + -2.0
1,395,564 - -0.9
1,395,564 - -1.2
1,395,564 - -1.8
1,395,565 + -0.7
1,395,565 + +0.0
1,395,565 + -1.2
1,395,565 + -0.3
1,395,758 - -1.7
1,395,758 - +0.7
1,395,787 + -0.2
1,395,787 + -0.1
1,395,960 + MMP_RS07330 0.14 -0.7
1,396,053 + MMP_RS07330 0.17 -1.0
1,396,106 - MMP_RS07330 0.20 -1.1
1,396,106 - MMP_RS07330 0.20 -1.4
1,396,107 + MMP_RS07330 0.20 -2.7
1,396,107 + MMP_RS07330 0.20 -3.0
1,396,157 + MMP_RS07330 0.22 -1.6
1,396,158 - MMP_RS07330 0.22 -1.7
1,396,158 - MMP_RS07330 0.22 -1.7
1,396,159 + MMP_RS07330 0.22 -3.0
1,396,159 + MMP_RS07330 0.22 -0.7
1,396,160 - MMP_RS07330 0.22 -2.5
1,396,201 - MMP_RS07330 0.23 -1.3
1,396,213 - MMP_RS07330 0.24 -2.5
1,396,222 - MMP_RS07330 0.24 -2.3
1,396,311 - MMP_RS07330 0.28 -1.9
1,396,370 + MMP_RS07330 0.30 -3.1
1,396,372 - MMP_RS07330 0.30 -2.6
1,396,372 - MMP_RS07330 0.30 +0.6
1,396,373 + MMP_RS07330 0.30 -1.2
1,396,374 - MMP_RS07330 0.30 +2.0
1,396,374 - MMP_RS07330 0.30 -0.2
1,396,383 - MMP_RS07330 0.30 -1.9
1,396,383 - MMP_RS07330 0.30 -0.7
1,396,384 + MMP_RS07330 0.30 -2.3
1,396,394 + MMP_RS07330 0.31 -0.1
1,396,394 + MMP_RS07330 0.31 -1.8
1,396,394 + MMP_RS07330 0.31 -0.8
1,396,439 - MMP_RS07330 0.33 -0.5
1,396,440 + MMP_RS07330 0.33 -3.3
1,396,440 + MMP_RS07330 0.33 -1.1
1,396,445 + MMP_RS07330 0.33 -2.6
1,396,445 + MMP_RS07330 0.33 -0.6
1,396,445 + MMP_RS07330 0.33 -1.2
1,396,445 + MMP_RS07330 0.33 -1.0
1,396,445 + MMP_RS07330 0.33 -0.2
1,396,494 + MMP_RS07330 0.35 -1.1
1,396,496 - MMP_RS07330 0.35 -0.8
1,396,567 - MMP_RS07330 0.38 -1.6
1,396,568 + MMP_RS07330 0.38 -1.6
1,396,568 + MMP_RS07330 0.38 -1.5
1,396,568 + MMP_RS07330 0.38 -2.5
1,396,569 - MMP_RS07330 0.38 -0.1
1,396,570 + MMP_RS07330 0.38 -2.2
1,396,571 - MMP_RS07330 0.38 -0.2
1,396,851 + MMP_RS07330 0.49 -0.7
1,396,882 - MMP_RS07330 0.50 -1.1
1,396,883 + MMP_RS07330 0.50 -2.4
1,396,883 + MMP_RS07330 0.50 -2.4
1,396,883 + MMP_RS07330 0.50 -1.7
1,396,885 - MMP_RS07330 0.50 -0.6
1,396,926 + MMP_RS07330 0.52 +0.0
1,396,951 - MMP_RS07330 0.53 +0.7
1,396,951 - MMP_RS07330 0.53 -0.8
1,396,968 - MMP_RS07330 0.53 -1.5
1,396,969 + MMP_RS07330 0.53 -1.9
1,396,986 - MMP_RS07330 0.54 +0.5
1,397,012 + MMP_RS07330 0.55 -1.9
1,397,023 + MMP_RS07330 0.55 -1.9
1,397,039 + MMP_RS07330 0.56 -1.2
1,397,375 - MMP_RS07330 0.69 -0.8
1,397,391 - MMP_RS07330 0.70 -1.9
1,397,391 - MMP_RS07330 0.70 -0.2
1,397,411 + MMP_RS07330 0.71 -4.0
1,397,439 + MMP_RS07330 0.72 -0.4
1,397,439 + MMP_RS07330 0.72 +0.6
1,397,444 + MMP_RS07330 0.72 +0.5
1,397,462 + MMP_RS07330 0.73 -0.8
1,397,493 + MMP_RS07330 0.74 -0.6
1,397,497 - MMP_RS07330 0.74 -1.7
1,397,589 - MMP_RS07330 0.77 -3.1
1,397,590 + MMP_RS07330 0.78 -3.0
1,397,590 + MMP_RS07330 0.78 -1.3
1,397,606 - MMP_RS07330 0.78 +0.2
1,397,646 + MMP_RS07330 0.80 -1.7
1,397,733 + MMP_RS07330 0.83 -1.4
1,397,742 - MMP_RS07330 0.83 -2.0
1,397,743 + MMP_RS07330 0.84 -3.4
1,397,747 + MMP_RS07330 0.84 -1.1
1,397,753 + MMP_RS07330 0.84 -2.7
1,397,769 - MMP_RS07330 0.85 -0.2
1,398,020 - -1.7
1,398,021 + -1.2
1,398,136 - -1.6
1,398,163 + +1.1
1,398,206 + +0.2
1,398,291 + +2.0
1,398,333 - MMP_RS07335 0.10 +1.3
1,398,348 + MMP_RS07335 0.13 -1.9
1,398,512 - MMP_RS07335 0.44 -1.5
1,398,513 + MMP_RS07335 0.44 +0.5
1,398,515 - MMP_RS07335 0.44 +0.5
1,398,516 + MMP_RS07335 0.44 +2.1
1,398,523 + MMP_RS07335 0.46 +0.6
1,398,652 - MMP_RS07335 0.69 -1.9
1,398,838 + -1.6
1,398,838 + +0.3
1,398,847 - -0.5
1,398,871 + -1.2
1,399,001 + -1.0

Or see this region's nucleotide sequence