Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07115

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07110 and MMP_RS07115 are separated by 60 nucleotidesMMP_RS07115 and MMP_RS07120 are separated by 216 nucleotides MMP_RS07110: MMP_RS07110 - amidohydrolase family protein, at 1,359,806 to 1,360,924 _RS07110 MMP_RS07115: MMP_RS07115 - MBL fold metallo-hydrolase, at 1,360,985 to 1,362,253 _RS07115 MMP_RS07120: MMP_RS07120 - coenzyme F420 hydrogenase subunit alpha, at 1,362,470 to 1,363,714 _RS07120 Position (kb) 1360 1361 1362 1363Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1360.477 kb on + strandat 1360.623 kb on + strandat 1360.625 kb on + strandat 1360.749 kb on - strandat 1360.749 kb on - strandat 1360.805 kb on + strandat 1360.914 kb on - strandat 1360.945 kb on - strandat 1360.966 kb on + strandat 1361.180 kb on - strand, within MMP_RS07115at 1361.226 kb on - strand, within MMP_RS07115at 1361.238 kb on - strand, within MMP_RS07115at 1361.462 kb on + strand, within MMP_RS07115at 1361.508 kb on - strand, within MMP_RS07115at 1361.538 kb on - strand, within MMP_RS07115at 1361.542 kb on - strand, within MMP_RS07115at 1361.544 kb on - strand, within MMP_RS07115at 1361.545 kb on + strand, within MMP_RS07115at 1361.679 kb on + strand, within MMP_RS07115at 1361.867 kb on + strand, within MMP_RS07115at 1361.950 kb on - strand, within MMP_RS07115at 1361.953 kb on + strand, within MMP_RS07115at 1362.131 kb on + strandat 1362.224 kb on + strandat 1362.264 kb on - strandat 1362.447 kb on - strandat 1362.488 kb on + strandat 1362.570 kb on + strandat 1362.589 kb on + strandat 1362.661 kb on - strand, within MMP_RS07120at 1362.663 kb on - strand, within MMP_RS07120at 1362.664 kb on + strand, within MMP_RS07120at 1362.664 kb on + strand, within MMP_RS07120at 1362.760 kb on + strand, within MMP_RS07120at 1362.765 kb on - strand, within MMP_RS07120at 1362.793 kb on + strand, within MMP_RS07120at 1362.810 kb on - strand, within MMP_RS07120at 1362.853 kb on + strand, within MMP_RS07120at 1362.904 kb on + strand, within MMP_RS07120at 1363.039 kb on + strand, within MMP_RS07120at 1363.111 kb on + strand, within MMP_RS07120at 1363.111 kb on + strand, within MMP_RS07120at 1363.115 kb on - strand, within MMP_RS07120at 1363.116 kb on + strand, within MMP_RS07120at 1363.193 kb on - strand, within MMP_RS07120at 1363.247 kb on - strand, within MMP_RS07120at 1363.248 kb on + strand, within MMP_RS07120

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,360,477 + -1.3
1,360,623 + -0.3
1,360,625 + -1.2
1,360,749 - -0.8
1,360,749 - -1.6
1,360,805 + +0.3
1,360,914 - -1.8
1,360,945 - -2.0
1,360,966 + -0.4
1,361,180 - MMP_RS07115 0.15 -1.7
1,361,226 - MMP_RS07115 0.19 -2.4
1,361,238 - MMP_RS07115 0.20 -0.9
1,361,462 + MMP_RS07115 0.38 -2.7
1,361,508 - MMP_RS07115 0.41 -2.1
1,361,538 - MMP_RS07115 0.44 -1.6
1,361,542 - MMP_RS07115 0.44 -1.6
1,361,544 - MMP_RS07115 0.44 -1.9
1,361,545 + MMP_RS07115 0.44 -0.4
1,361,679 + MMP_RS07115 0.55 -2.9
1,361,867 + MMP_RS07115 0.70 -1.3
1,361,950 - MMP_RS07115 0.76 -0.7
1,361,953 + MMP_RS07115 0.76 -2.9
1,362,131 + -3.2
1,362,224 + -0.5
1,362,264 - +0.9
1,362,447 - +2.8
1,362,488 + +0.6
1,362,570 + +3.2
1,362,589 + +1.2
1,362,661 - MMP_RS07120 0.15 -1.4
1,362,663 - MMP_RS07120 0.16 +2.7
1,362,664 + MMP_RS07120 0.16 +3.3
1,362,664 + MMP_RS07120 0.16 -2.9
1,362,760 + MMP_RS07120 0.23 -2.1
1,362,765 - MMP_RS07120 0.24 -1.0
1,362,793 + MMP_RS07120 0.26 +0.4
1,362,810 - MMP_RS07120 0.27 -0.5
1,362,853 + MMP_RS07120 0.31 -0.4
1,362,904 + MMP_RS07120 0.35 -2.2
1,363,039 + MMP_RS07120 0.46 -2.3
1,363,111 + MMP_RS07120 0.51 +2.2
1,363,111 + MMP_RS07120 0.51 +2.4
1,363,115 - MMP_RS07120 0.52 +2.0
1,363,116 + MMP_RS07120 0.52 +1.2
1,363,193 - MMP_RS07120 0.58 -1.5
1,363,247 - MMP_RS07120 0.62 -0.0
1,363,248 + MMP_RS07120 0.62 +2.0

Or see this region's nucleotide sequence