Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07110 and MMP_RS07115 are separated by 60 nucleotides MMP_RS07115 and MMP_RS07120 are separated by 216 nucleotides
MMP_RS07110: MMP_RS07110 - amidohydrolase family protein, at 1,359,806 to 1,360,924
_RS07110
MMP_RS07115: MMP_RS07115 - MBL fold metallo-hydrolase, at 1,360,985 to 1,362,253
_RS07115
MMP_RS07120: MMP_RS07120 - coenzyme F420 hydrogenase subunit alpha, at 1,362,470 to 1,363,714
_RS07120
Position (kb)
1360
1361
1362
1363 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1360.477 kb on + strand at 1360.623 kb on + strand at 1360.625 kb on + strand at 1360.749 kb on - strand at 1360.749 kb on - strand at 1360.805 kb on + strand at 1360.914 kb on - strand at 1360.945 kb on - strand at 1360.966 kb on + strand at 1361.180 kb on - strand, within MMP_RS07115 at 1361.226 kb on - strand, within MMP_RS07115 at 1361.238 kb on - strand, within MMP_RS07115 at 1361.462 kb on + strand, within MMP_RS07115 at 1361.508 kb on - strand, within MMP_RS07115 at 1361.538 kb on - strand, within MMP_RS07115 at 1361.542 kb on - strand, within MMP_RS07115 at 1361.544 kb on - strand, within MMP_RS07115 at 1361.545 kb on + strand, within MMP_RS07115 at 1361.679 kb on + strand, within MMP_RS07115 at 1361.867 kb on + strand, within MMP_RS07115 at 1361.950 kb on - strand, within MMP_RS07115 at 1361.953 kb on + strand, within MMP_RS07115 at 1362.131 kb on + strand at 1362.224 kb on + strand at 1362.264 kb on - strand at 1362.447 kb on - strand at 1362.488 kb on + strand at 1362.570 kb on + strand at 1362.589 kb on + strand at 1362.661 kb on - strand, within MMP_RS07120 at 1362.663 kb on - strand, within MMP_RS07120 at 1362.664 kb on + strand, within MMP_RS07120 at 1362.664 kb on + strand, within MMP_RS07120 at 1362.760 kb on + strand, within MMP_RS07120 at 1362.765 kb on - strand, within MMP_RS07120 at 1362.793 kb on + strand, within MMP_RS07120 at 1362.810 kb on - strand, within MMP_RS07120 at 1362.853 kb on + strand, within MMP_RS07120 at 1362.904 kb on + strand, within MMP_RS07120 at 1363.039 kb on + strand, within MMP_RS07120 at 1363.111 kb on + strand, within MMP_RS07120 at 1363.111 kb on + strand, within MMP_RS07120 at 1363.115 kb on - strand, within MMP_RS07120 at 1363.116 kb on + strand, within MMP_RS07120 at 1363.193 kb on - strand, within MMP_RS07120 at 1363.247 kb on - strand, within MMP_RS07120 at 1363.248 kb on + strand, within MMP_RS07120
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,360,477 + -1.3 1,360,623 + -0.3 1,360,625 + -1.2 1,360,749 - -0.8 1,360,749 - -1.6 1,360,805 + +0.3 1,360,914 - -1.8 1,360,945 - -2.0 1,360,966 + -0.4 1,361,180 - MMP_RS07115 0.15 -1.7 1,361,226 - MMP_RS07115 0.19 -2.4 1,361,238 - MMP_RS07115 0.20 -0.9 1,361,462 + MMP_RS07115 0.38 -2.7 1,361,508 - MMP_RS07115 0.41 -2.1 1,361,538 - MMP_RS07115 0.44 -1.6 1,361,542 - MMP_RS07115 0.44 -1.6 1,361,544 - MMP_RS07115 0.44 -1.9 1,361,545 + MMP_RS07115 0.44 -0.4 1,361,679 + MMP_RS07115 0.55 -2.9 1,361,867 + MMP_RS07115 0.70 -1.3 1,361,950 - MMP_RS07115 0.76 -0.7 1,361,953 + MMP_RS07115 0.76 -2.9 1,362,131 + -3.2 1,362,224 + -0.5 1,362,264 - +0.9 1,362,447 - +2.8 1,362,488 + +0.6 1,362,570 + +3.2 1,362,589 + +1.2 1,362,661 - MMP_RS07120 0.15 -1.4 1,362,663 - MMP_RS07120 0.16 +2.7 1,362,664 + MMP_RS07120 0.16 +3.3 1,362,664 + MMP_RS07120 0.16 -2.9 1,362,760 + MMP_RS07120 0.23 -2.1 1,362,765 - MMP_RS07120 0.24 -1.0 1,362,793 + MMP_RS07120 0.26 +0.4 1,362,810 - MMP_RS07120 0.27 -0.5 1,362,853 + MMP_RS07120 0.31 -0.4 1,362,904 + MMP_RS07120 0.35 -2.2 1,363,039 + MMP_RS07120 0.46 -2.3 1,363,111 + MMP_RS07120 0.51 +2.2 1,363,111 + MMP_RS07120 0.51 +2.4 1,363,115 - MMP_RS07120 0.52 +2.0 1,363,116 + MMP_RS07120 0.52 +1.2 1,363,193 - MMP_RS07120 0.58 -1.5 1,363,247 - MMP_RS07120 0.62 -0.0 1,363,248 + MMP_RS07120 0.62 +2.0
Or see this region's nucleotide sequence