Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06740

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06735 and MMP_RS06740 are separated by 51 nucleotidesMMP_RS06740 and MMP_RS06745 are separated by 75 nucleotidesMMP_RS06745 and MMP_RS06750 are separated by 35 nucleotides MMP_RS06735: MMP_RS06735 - class I SAM-dependent rRNA methyltransferase, at 1,293,490 to 1,294,632 _RS06735 MMP_RS06740: MMP_RS06740 - fructose-6-phosphate aldolase, at 1,294,684 to 1,295,331 _RS06740 MMP_RS06745: MMP_RS06745 - DUF2119 domain-containing protein, at 1,295,407 to 1,296,018 _RS06745 MMP_RS06750: MMP_RS06750 - IMP cyclohydrolase, at 1,296,054 to 1,296,659 _RS06750 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -1 0 1 2at 1293.856 kb on + strand, within MMP_RS06735at 1294.295 kb on - strand, within MMP_RS06735at 1294.300 kb on + strand, within MMP_RS06735at 1294.308 kb on - strand, within MMP_RS06735at 1294.508 kb on - strand, within MMP_RS06735at 1294.509 kb on + strand, within MMP_RS06735at 1294.552 kb on + strandat 1294.604 kb on - strandat 1294.685 kb on - strandat 1295.089 kb on - strandat 1295.171 kb on + strandat 1295.240 kb on + strandat 1295.370 kb on + strandat 1295.385 kb on - strandat 1295.389 kb on - strandat 1295.390 kb on + strandat 1295.395 kb on + strandat 1295.395 kb on + strandat 1295.468 kb on - strandat 1295.472 kb on - strand, within MMP_RS06745at 1295.539 kb on - strand, within MMP_RS06745at 1295.659 kb on - strand, within MMP_RS06745at 1295.660 kb on + strand, within MMP_RS06745at 1295.940 kb on + strand, within MMP_RS06745at 1296.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,293,856 + MMP_RS06735 0.32 -1.5
1,294,295 - MMP_RS06735 0.70 -0.5
1,294,300 + MMP_RS06735 0.71 -0.5
1,294,308 - MMP_RS06735 0.72 +0.4
1,294,508 - MMP_RS06735 0.89 -0.9
1,294,509 + MMP_RS06735 0.89 -1.2
1,294,552 + +0.5
1,294,604 - -0.4
1,294,685 - -1.1
1,295,089 - -0.2
1,295,171 + +1.0
1,295,240 + -1.0
1,295,370 + +0.9
1,295,385 - -1.3
1,295,389 - +0.4
1,295,390 + +1.1
1,295,395 + -0.3
1,295,395 + -1.7
1,295,468 - +2.5
1,295,472 - MMP_RS06745 0.11 +2.2
1,295,539 - MMP_RS06745 0.22 -0.8
1,295,659 - MMP_RS06745 0.41 +1.3
1,295,660 + MMP_RS06745 0.41 -1.2
1,295,940 + MMP_RS06745 0.87 +2.0
1,296,147 - -1.1

Or see this region's nucleotide sequence