Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06725

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06715 and MMP_RS06720 are separated by 27 nucleotidesMMP_RS06720 and MMP_RS06725 are separated by 215 nucleotidesMMP_RS06725 and MMP_RS06730 are separated by 25 nucleotidesMMP_RS06730 and MMP_RS06735 are separated by 62 nucleotides MMP_RS06715: MMP_RS06715 - cache domain-containing protein, at 1,288,715 to 1,290,634 _RS06715 MMP_RS06720: MMP_RS06720 - response regulator transcription factor, at 1,290,662 to 1,291,021 _RS06720 MMP_RS06725: MMP_RS06725 - hypothetical protein, at 1,291,237 to 1,292,640 _RS06725 MMP_RS06730: MMP_RS06730 - phosphopantothenate/pantothenate synthetase, at 1,292,666 to 1,293,427 _RS06730 MMP_RS06735: MMP_RS06735 - class I SAM-dependent rRNA methyltransferase, at 1,293,490 to 1,294,632 _RS06735 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 1290.260 kb on - strand, within MMP_RS06715at 1290.260 kb on - strand, within MMP_RS06715at 1290.413 kb on + strand, within MMP_RS06715at 1290.416 kb on + strand, within MMP_RS06715at 1290.422 kb on + strand, within MMP_RS06715at 1290.422 kb on + strand, within MMP_RS06715at 1290.626 kb on + strandat 1290.679 kb on - strandat 1290.749 kb on + strand, within MMP_RS06720at 1290.945 kb on - strand, within MMP_RS06720at 1290.949 kb on - strand, within MMP_RS06720at 1290.980 kb on - strand, within MMP_RS06720at 1290.981 kb on + strand, within MMP_RS06720at 1290.981 kb on + strand, within MMP_RS06720at 1290.983 kb on - strand, within MMP_RS06720at 1290.985 kb on - strand, within MMP_RS06720at 1290.985 kb on - strand, within MMP_RS06720at 1290.986 kb on + strandat 1290.986 kb on + strandat 1291.044 kb on - strandat 1291.045 kb on + strandat 1291.052 kb on - strandat 1291.052 kb on - strandat 1291.125 kb on + strandat 1291.125 kb on + strandat 1291.126 kb on - strandat 1291.176 kb on + strandat 1291.176 kb on + strandat 1291.177 kb on - strandat 1291.178 kb on + strandat 1291.178 kb on + strandat 1291.212 kb on + strandat 1291.220 kb on - strandat 1291.264 kb on + strandat 1291.428 kb on - strand, within MMP_RS06725at 1291.440 kb on + strand, within MMP_RS06725at 1291.476 kb on - strand, within MMP_RS06725at 1291.637 kb on + strand, within MMP_RS06725at 1291.640 kb on - strand, within MMP_RS06725at 1291.641 kb on + strand, within MMP_RS06725at 1291.641 kb on + strand, within MMP_RS06725at 1291.641 kb on + strand, within MMP_RS06725at 1291.687 kb on + strand, within MMP_RS06725at 1291.756 kb on + strand, within MMP_RS06725at 1291.756 kb on + strand, within MMP_RS06725at 1291.756 kb on + strand, within MMP_RS06725at 1291.759 kb on - strand, within MMP_RS06725at 1291.759 kb on - strand, within MMP_RS06725at 1291.789 kb on + strand, within MMP_RS06725at 1291.789 kb on + strand, within MMP_RS06725at 1291.791 kb on - strand, within MMP_RS06725at 1291.792 kb on + strand, within MMP_RS06725at 1291.821 kb on + strand, within MMP_RS06725at 1291.837 kb on - strand, within MMP_RS06725at 1291.847 kb on + strand, within MMP_RS06725at 1291.852 kb on - strand, within MMP_RS06725at 1291.882 kb on + strand, within MMP_RS06725at 1291.938 kb on + strand, within MMP_RS06725at 1291.965 kb on - strand, within MMP_RS06725at 1291.965 kb on - strand, within MMP_RS06725at 1292.009 kb on - strand, within MMP_RS06725at 1292.031 kb on + strand, within MMP_RS06725at 1292.175 kb on - strand, within MMP_RS06725at 1292.233 kb on + strand, within MMP_RS06725at 1292.357 kb on + strand, within MMP_RS06725at 1292.390 kb on - strand, within MMP_RS06725at 1292.793 kb on + strand, within MMP_RS06730at 1293.000 kb on + strand, within MMP_RS06730at 1293.067 kb on - strand, within MMP_RS06730at 1293.118 kb on + strand, within MMP_RS06730at 1293.368 kb on - strandat 1293.399 kb on - strandat 1293.438 kb on - strandat 1293.492 kb on + strandat 1293.496 kb on - strandat 1293.525 kb on + strandat 1293.525 kb on + strandat 1293.553 kb on - strandat 1293.553 kb on - strandat 1293.554 kb on + strandat 1293.633 kb on - strand, within MMP_RS06735

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,290,260 - MMP_RS06715 0.80 +2.4
1,290,260 - MMP_RS06715 0.80 +5.5
1,290,413 + MMP_RS06715 0.88 +3.6
1,290,416 + MMP_RS06715 0.89 +5.5
1,290,422 + MMP_RS06715 0.89 +5.0
1,290,422 + MMP_RS06715 0.89 +4.2
1,290,626 + +1.1
1,290,679 - +4.5
1,290,749 + MMP_RS06720 0.24 +4.5
1,290,945 - MMP_RS06720 0.79 +2.1
1,290,949 - MMP_RS06720 0.80 +6.7
1,290,980 - MMP_RS06720 0.88 +5.1
1,290,981 + MMP_RS06720 0.89 +3.7
1,290,981 + MMP_RS06720 0.89 +6.5
1,290,983 - MMP_RS06720 0.89 +3.9
1,290,985 - MMP_RS06720 0.90 +5.9
1,290,985 - MMP_RS06720 0.90 +6.3
1,290,986 + +4.9
1,290,986 + +5.4
1,291,044 - +1.8
1,291,045 + +0.1
1,291,052 - +0.7
1,291,052 - -2.2
1,291,125 + -3.1
1,291,125 + +1.9
1,291,126 - -2.1
1,291,176 + -0.3
1,291,176 + -1.9
1,291,177 - -0.4
1,291,178 + -1.7
1,291,178 + -3.0
1,291,212 + -1.3
1,291,220 - -0.8
1,291,264 + -3.2
1,291,428 - MMP_RS06725 0.14 -0.8
1,291,440 + MMP_RS06725 0.14 +1.5
1,291,476 - MMP_RS06725 0.17 -0.7
1,291,637 + MMP_RS06725 0.28 -2.5
1,291,640 - MMP_RS06725 0.29 +0.2
1,291,641 + MMP_RS06725 0.29 -2.0
1,291,641 + MMP_RS06725 0.29 -0.1
1,291,641 + MMP_RS06725 0.29 -0.2
1,291,687 + MMP_RS06725 0.32 +0.3
1,291,756 + MMP_RS06725 0.37 -0.5
1,291,756 + MMP_RS06725 0.37 -4.1
1,291,756 + MMP_RS06725 0.37 -1.9
1,291,759 - MMP_RS06725 0.37 -0.0
1,291,759 - MMP_RS06725 0.37 -1.8
1,291,789 + MMP_RS06725 0.39 +0.3
1,291,789 + MMP_RS06725 0.39 -0.4
1,291,791 - MMP_RS06725 0.39 -2.8
1,291,792 + MMP_RS06725 0.40 -2.5
1,291,821 + MMP_RS06725 0.42 -3.1
1,291,837 - MMP_RS06725 0.43 -0.5
1,291,847 + MMP_RS06725 0.43 -1.7
1,291,852 - MMP_RS06725 0.44 -1.8
1,291,882 + MMP_RS06725 0.46 -0.8
1,291,938 + MMP_RS06725 0.50 -2.2
1,291,965 - MMP_RS06725 0.52 -3.1
1,291,965 - MMP_RS06725 0.52 -1.1
1,292,009 - MMP_RS06725 0.55 +0.9
1,292,031 + MMP_RS06725 0.57 -1.1
1,292,175 - MMP_RS06725 0.67 -1.1
1,292,233 + MMP_RS06725 0.71 -2.1
1,292,357 + MMP_RS06725 0.80 -2.2
1,292,390 - MMP_RS06725 0.82 -0.8
1,292,793 + MMP_RS06730 0.17 +0.5
1,293,000 + MMP_RS06730 0.44 -0.3
1,293,067 - MMP_RS06730 0.53 -1.3
1,293,118 + MMP_RS06730 0.59 +0.6
1,293,368 - -0.5
1,293,399 - -0.3
1,293,438 - +1.4
1,293,492 + -1.3
1,293,496 - +1.2
1,293,525 + -0.8
1,293,525 + -0.7
1,293,553 - +1.6
1,293,553 - +0.8
1,293,554 + -0.4
1,293,633 - MMP_RS06735 0.13 -1.6

Or see this region's nucleotide sequence