Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06395

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06385 and MMP_RS06390 are separated by 10 nucleotidesMMP_RS06390 and MMP_RS06395 are separated by 52 nucleotidesMMP_RS06395 and MMP_RS06400 are separated by 203 nucleotidesMMP_RS06400 and MMP_RS06405 are separated by 23 nucleotides MMP_RS06385: MMP_RS06385 - hypothetical protein, at 1,226,815 to 1,227,174 _RS06385 MMP_RS06390: MMP_RS06390 - quinolinate synthase NadA, at 1,227,185 to 1,228,102 _RS06390 MMP_RS06395: MMP_RS06395 - ThiF family adenylyltransferase, at 1,228,155 to 1,228,769 _RS06395 MMP_RS06400: MMP_RS06400 - 4Fe-4S binding protein, at 1,228,973 to 1,229,419 _RS06400 MMP_RS06405: MMP_RS06405 - 4Fe-4S binding protein, at 1,229,443 to 1,230,501 _RS06405 Position (kb) 1228 1229Strain fitness (log2 ratio) -2 -1 0 1 2at 1227.173 kb on + strandat 1227.710 kb on + strandat 1227.766 kb on - strandat 1227.771 kb on + strandat 1227.779 kb on - strandat 1227.821 kb on + strandat 1228.036 kb on + strandat 1228.094 kb on - strandat 1228.094 kb on - strandat 1228.416 kb on - strand, within MMP_RS06395at 1228.509 kb on + strand, within MMP_RS06395at 1228.568 kb on + strand, within MMP_RS06395at 1228.603 kb on + strand, within MMP_RS06395at 1228.798 kb on + strandat 1228.837 kb on + strandat 1228.928 kb on - strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.929 kb on + strandat 1228.951 kb on + strandat 1228.985 kb on + strandat 1228.985 kb on + strandat 1228.985 kb on + strandat 1228.986 kb on - strandat 1228.986 kb on - strandat 1228.987 kb on + strandat 1228.987 kb on + strandat 1228.990 kb on + strandat 1229.234 kb on - strand, within MMP_RS06400at 1229.242 kb on + strand, within MMP_RS06400at 1229.251 kb on - strand, within MMP_RS06400at 1229.439 kb on - strandat 1229.440 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,227,173 + +1.0
1,227,710 + +0.7
1,227,766 - -0.3
1,227,771 + -0.5
1,227,779 - +0.0
1,227,821 + -1.8
1,228,036 + +0.3
1,228,094 - +1.3
1,228,094 - +0.5
1,228,416 - MMP_RS06395 0.42 -2.1
1,228,509 + MMP_RS06395 0.58 -1.0
1,228,568 + MMP_RS06395 0.67 -1.4
1,228,603 + MMP_RS06395 0.73 -1.9
1,228,798 + +1.0
1,228,837 + -0.8
1,228,928 - +0.3
1,228,929 + -0.5
1,228,929 + -0.3
1,228,929 + -2.5
1,228,929 + -1.1
1,228,951 + -1.0
1,228,985 + -1.1
1,228,985 + +1.3
1,228,985 + -2.7
1,228,986 - +0.7
1,228,986 - -2.0
1,228,987 + +0.1
1,228,987 + -1.3
1,228,990 + +0.7
1,229,234 - MMP_RS06400 0.58 +0.5
1,229,242 + MMP_RS06400 0.60 +0.0
1,229,251 - MMP_RS06400 0.62 -1.1
1,229,439 - +2.1
1,229,440 + -0.5

Or see this region's nucleotide sequence