Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06335

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06330 and MMP_RS06335 are separated by 94 nucleotidesMMP_RS06335 and MMP_RS06340 are separated by 20 nucleotidesMMP_RS06340 and MMP_RS06345 are separated by 52 nucleotides MMP_RS06330: MMP_RS06330 - nucleotidyltransferase domain-containing protein, at 1,218,373 to 1,219,431 _RS06330 MMP_RS06335: MMP_RS06335 - HAD family hydrolase, at 1,219,526 to 1,219,909 _RS06335 MMP_RS06340: MMP_RS06340 - phosphoadenosine phosphosulfate reductase family protein, at 1,219,930 to 1,220,820 _RS06340 MMP_RS06345: MMP_RS06345 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,220,873 to 1,221,574 _RS06345 Position (kb) 1219 1220Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1218.536 kb on - strandat 1219.097 kb on - strandat 1219.123 kb on - strandat 1219.291 kb on - strandat 1219.411 kb on - strandat 1219.448 kb on - strandat 1219.460 kb on + strandat 1219.546 kb on + strandat 1219.589 kb on - strand, within MMP_RS06335at 1219.606 kb on - strand, within MMP_RS06335at 1219.718 kb on - strand, within MMP_RS06335at 1219.719 kb on + strand, within MMP_RS06335at 1219.987 kb on - strandat 1220.075 kb on + strand, within MMP_RS06340at 1220.173 kb on - strand, within MMP_RS06340at 1220.211 kb on - strand, within MMP_RS06340at 1220.326 kb on + strand, within MMP_RS06340at 1220.352 kb on + strand, within MMP_RS06340at 1220.359 kb on - strand, within MMP_RS06340at 1220.404 kb on - strand, within MMP_RS06340at 1220.455 kb on + strand, within MMP_RS06340at 1220.460 kb on - strand, within MMP_RS06340at 1220.523 kb on - strand, within MMP_RS06340at 1220.524 kb on + strand, within MMP_RS06340at 1220.548 kb on + strand, within MMP_RS06340at 1220.714 kb on + strand, within MMP_RS06340at 1220.761 kb on - strandat 1220.822 kb on - strandat 1220.847 kb on + strandat 1220.857 kb on + strandat 1220.888 kb on - strandat 1220.898 kb on + strandat 1220.907 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,218,536 - -2.4
1,219,097 - -2.5
1,219,123 - -2.2
1,219,291 - -2.4
1,219,411 - +1.8
1,219,448 - -0.8
1,219,460 + +0.1
1,219,546 + +0.4
1,219,589 - MMP_RS06335 0.16 +0.4
1,219,606 - MMP_RS06335 0.21 -1.1
1,219,718 - MMP_RS06335 0.50 +0.2
1,219,719 + MMP_RS06335 0.50 -1.3
1,219,987 - +1.5
1,220,075 + MMP_RS06340 0.16 -0.8
1,220,173 - MMP_RS06340 0.27 +3.1
1,220,211 - MMP_RS06340 0.32 +1.4
1,220,326 + MMP_RS06340 0.44 +2.6
1,220,352 + MMP_RS06340 0.47 +2.1
1,220,359 - MMP_RS06340 0.48 +1.4
1,220,404 - MMP_RS06340 0.53 -0.2
1,220,455 + MMP_RS06340 0.59 -0.2
1,220,460 - MMP_RS06340 0.59 +1.1
1,220,523 - MMP_RS06340 0.67 +0.2
1,220,524 + MMP_RS06340 0.67 +2.1
1,220,548 + MMP_RS06340 0.69 +0.5
1,220,714 + MMP_RS06340 0.88 +1.4
1,220,761 - -0.1
1,220,822 - +0.7
1,220,847 + +0.7
1,220,857 + +1.6
1,220,888 - +2.9
1,220,898 + +7.2
1,220,907 - +6.5

Or see this region's nucleotide sequence