Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06330 and MMP_RS06335 are separated by 94 nucleotides MMP_RS06335 and MMP_RS06340 are separated by 20 nucleotides MMP_RS06340 and MMP_RS06345 are separated by 52 nucleotides
MMP_RS06330: MMP_RS06330 - nucleotidyltransferase domain-containing protein, at 1,218,373 to 1,219,431
_RS06330
MMP_RS06335: MMP_RS06335 - HAD family hydrolase, at 1,219,526 to 1,219,909
_RS06335
MMP_RS06340: MMP_RS06340 - phosphoadenosine phosphosulfate reductase family protein, at 1,219,930 to 1,220,820
_RS06340
MMP_RS06345: MMP_RS06345 - formate dehydrogenase accessory sulfurtransferase FdhD, at 1,220,873 to 1,221,574
_RS06345
Position (kb)
1219
1220 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1218.536 kb on - strand at 1219.097 kb on - strand at 1219.123 kb on - strand at 1219.291 kb on - strand at 1219.411 kb on - strand at 1219.448 kb on - strand at 1219.460 kb on + strand at 1219.546 kb on + strand at 1219.589 kb on - strand, within MMP_RS06335 at 1219.606 kb on - strand, within MMP_RS06335 at 1219.718 kb on - strand, within MMP_RS06335 at 1219.719 kb on + strand, within MMP_RS06335 at 1219.987 kb on - strand at 1220.075 kb on + strand, within MMP_RS06340 at 1220.173 kb on - strand, within MMP_RS06340 at 1220.211 kb on - strand, within MMP_RS06340 at 1220.326 kb on + strand, within MMP_RS06340 at 1220.352 kb on + strand, within MMP_RS06340 at 1220.359 kb on - strand, within MMP_RS06340 at 1220.404 kb on - strand, within MMP_RS06340 at 1220.455 kb on + strand, within MMP_RS06340 at 1220.460 kb on - strand, within MMP_RS06340 at 1220.523 kb on - strand, within MMP_RS06340 at 1220.524 kb on + strand, within MMP_RS06340 at 1220.548 kb on + strand, within MMP_RS06340 at 1220.714 kb on + strand, within MMP_RS06340 at 1220.761 kb on - strand at 1220.822 kb on - strand at 1220.847 kb on + strand at 1220.857 kb on + strand at 1220.888 kb on - strand at 1220.898 kb on + strand at 1220.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,218,536 - -2.4 1,219,097 - -2.5 1,219,123 - -2.2 1,219,291 - -2.4 1,219,411 - +1.8 1,219,448 - -0.8 1,219,460 + +0.1 1,219,546 + +0.4 1,219,589 - MMP_RS06335 0.16 +0.4 1,219,606 - MMP_RS06335 0.21 -1.1 1,219,718 - MMP_RS06335 0.50 +0.2 1,219,719 + MMP_RS06335 0.50 -1.3 1,219,987 - +1.5 1,220,075 + MMP_RS06340 0.16 -0.8 1,220,173 - MMP_RS06340 0.27 +3.1 1,220,211 - MMP_RS06340 0.32 +1.4 1,220,326 + MMP_RS06340 0.44 +2.6 1,220,352 + MMP_RS06340 0.47 +2.1 1,220,359 - MMP_RS06340 0.48 +1.4 1,220,404 - MMP_RS06340 0.53 -0.2 1,220,455 + MMP_RS06340 0.59 -0.2 1,220,460 - MMP_RS06340 0.59 +1.1 1,220,523 - MMP_RS06340 0.67 +0.2 1,220,524 + MMP_RS06340 0.67 +2.1 1,220,548 + MMP_RS06340 0.69 +0.5 1,220,714 + MMP_RS06340 0.88 +1.4 1,220,761 - -0.1 1,220,822 - +0.7 1,220,847 + +0.7 1,220,857 + +1.6 1,220,888 - +2.9 1,220,898 + +7.2 1,220,907 - +6.5
Or see this region's nucleotide sequence