Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06185

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06180 and MMP_RS06185 are separated by 250 nucleotidesMMP_RS06185 and MMP_RS06190 are separated by 9 nucleotidesMMP_RS06190 and MMP_RS06195 are separated by 7 nucleotides MMP_RS06180: MMP_RS06180 - diaminopimelate decarboxylase, at 1,186,534 to 1,187,844 _RS06180 MMP_RS06185: MMP_RS06185 - thermonuclease family protein, at 1,188,095 to 1,188,652 _RS06185 MMP_RS06190: MMP_RS06190 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 1,188,662 to 1,189,045 _RS06190 MMP_RS06195: MMP_RS06195 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 1,189,053 to 1,190,150 _RS06195 Position (kb) 1188 1189Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1187.302 kb on - strandat 1187.361 kb on + strandat 1187.537 kb on + strandat 1187.722 kb on - strandat 1187.782 kb on + strandat 1187.820 kb on - strandat 1187.848 kb on + strandat 1187.878 kb on - strandat 1187.884 kb on - strandat 1187.903 kb on - strandat 1187.908 kb on - strandat 1187.918 kb on + strandat 1187.956 kb on - strandat 1187.959 kb on - strandat 1187.960 kb on + strandat 1188.089 kb on + strandat 1188.094 kb on + strandat 1188.185 kb on + strand, within MMP_RS06185at 1188.373 kb on + strand, within MMP_RS06185at 1188.373 kb on + strand, within MMP_RS06185at 1188.403 kb on - strand, within MMP_RS06185at 1188.404 kb on + strand, within MMP_RS06185at 1188.557 kb on - strand, within MMP_RS06185at 1188.576 kb on - strand, within MMP_RS06185at 1188.580 kb on - strand, within MMP_RS06185at 1188.580 kb on - strand, within MMP_RS06185at 1188.598 kb on - strandat 1188.598 kb on - strandat 1188.599 kb on + strandat 1188.653 kb on + strandat 1188.655 kb on - strandat 1188.739 kb on + strand, within MMP_RS06190at 1188.739 kb on + strand, within MMP_RS06190at 1188.739 kb on + strand, within MMP_RS06190at 1188.740 kb on - strand, within MMP_RS06190at 1188.740 kb on - strand, within MMP_RS06190at 1188.741 kb on + strand, within MMP_RS06190at 1188.777 kb on - strand, within MMP_RS06190at 1188.786 kb on + strand, within MMP_RS06190at 1188.788 kb on + strand, within MMP_RS06190at 1189.071 kb on - strandat 1189.072 kb on + strandat 1189.074 kb on + strandat 1189.085 kb on - strandat 1189.090 kb on + strandat 1189.094 kb on - strandat 1189.095 kb on + strandat 1189.095 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
remove
1,187,302 - +1.1
1,187,361 + +1.9
1,187,537 + -1.1
1,187,722 - -0.6
1,187,782 + +3.8
1,187,820 - +0.5
1,187,848 + +1.2
1,187,878 - +0.7
1,187,884 - +0.1
1,187,903 - -0.6
1,187,908 - -1.3
1,187,918 + +1.6
1,187,956 - +0.5
1,187,959 - +0.2
1,187,960 + +1.1
1,188,089 + -0.2
1,188,094 + +2.9
1,188,185 + MMP_RS06185 0.16 +0.3
1,188,373 + MMP_RS06185 0.50 -1.2
1,188,373 + MMP_RS06185 0.50 -2.5
1,188,403 - MMP_RS06185 0.55 +0.8
1,188,404 + MMP_RS06185 0.55 -0.1
1,188,557 - MMP_RS06185 0.83 -0.7
1,188,576 - MMP_RS06185 0.86 -0.9
1,188,580 - MMP_RS06185 0.87 -0.7
1,188,580 - MMP_RS06185 0.87 +0.5
1,188,598 - -0.2
1,188,598 - +1.2
1,188,599 + -1.4
1,188,653 + +0.9
1,188,655 - -0.5
1,188,739 + MMP_RS06190 0.20 -1.0
1,188,739 + MMP_RS06190 0.20 -1.6
1,188,739 + MMP_RS06190 0.20 -1.3
1,188,740 - MMP_RS06190 0.20 +0.6
1,188,740 - MMP_RS06190 0.20 +1.5
1,188,741 + MMP_RS06190 0.21 -0.6
1,188,777 - MMP_RS06190 0.30 -1.9
1,188,786 + MMP_RS06190 0.32 +0.4
1,188,788 + MMP_RS06190 0.33 -0.9
1,189,071 - +0.6
1,189,072 + -0.7
1,189,074 + -1.4
1,189,085 - +0.2
1,189,090 + -0.6
1,189,094 - -1.5
1,189,095 + -2.0
1,189,095 + +0.9

Or see this region's nucleotide sequence