Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06180 and MMP_RS06185 are separated by 250 nucleotides MMP_RS06185 and MMP_RS06190 are separated by 9 nucleotides MMP_RS06190 and MMP_RS06195 are separated by 7 nucleotides
MMP_RS06180: MMP_RS06180 - diaminopimelate decarboxylase, at 1,186,534 to 1,187,844
_RS06180
MMP_RS06185: MMP_RS06185 - thermonuclease family protein, at 1,188,095 to 1,188,652
_RS06185
MMP_RS06190: MMP_RS06190 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 1,188,662 to 1,189,045
_RS06190
MMP_RS06195: MMP_RS06195 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 1,189,053 to 1,190,150
_RS06195
Position (kb)
1188
1189 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1187.302 kb on - strand at 1187.361 kb on + strand at 1187.537 kb on + strand at 1187.722 kb on - strand at 1187.782 kb on + strand at 1187.820 kb on - strand at 1187.848 kb on + strand at 1187.878 kb on - strand at 1187.884 kb on - strand at 1187.903 kb on - strand at 1187.908 kb on - strand at 1187.918 kb on + strand at 1187.956 kb on - strand at 1187.959 kb on - strand at 1187.960 kb on + strand at 1188.089 kb on + strand at 1188.094 kb on + strand at 1188.185 kb on + strand, within MMP_RS06185 at 1188.373 kb on + strand, within MMP_RS06185 at 1188.373 kb on + strand, within MMP_RS06185 at 1188.403 kb on - strand, within MMP_RS06185 at 1188.404 kb on + strand, within MMP_RS06185 at 1188.557 kb on - strand, within MMP_RS06185 at 1188.576 kb on - strand, within MMP_RS06185 at 1188.580 kb on - strand, within MMP_RS06185 at 1188.580 kb on - strand, within MMP_RS06185 at 1188.598 kb on - strand at 1188.598 kb on - strand at 1188.599 kb on + strand at 1188.653 kb on + strand at 1188.655 kb on - strand at 1188.739 kb on + strand, within MMP_RS06190 at 1188.739 kb on + strand, within MMP_RS06190 at 1188.739 kb on + strand, within MMP_RS06190 at 1188.740 kb on - strand, within MMP_RS06190 at 1188.740 kb on - strand, within MMP_RS06190 at 1188.741 kb on + strand, within MMP_RS06190 at 1188.777 kb on - strand, within MMP_RS06190 at 1188.786 kb on + strand, within MMP_RS06190 at 1188.788 kb on + strand, within MMP_RS06190 at 1189.071 kb on - strand at 1189.072 kb on + strand at 1189.074 kb on + strand at 1189.085 kb on - strand at 1189.090 kb on + strand at 1189.094 kb on - strand at 1189.095 kb on + strand at 1189.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,187,302 - +1.1 1,187,361 + +1.9 1,187,537 + -1.1 1,187,722 - -0.6 1,187,782 + +3.8 1,187,820 - +0.5 1,187,848 + +1.2 1,187,878 - +0.7 1,187,884 - +0.1 1,187,903 - -0.6 1,187,908 - -1.3 1,187,918 + +1.6 1,187,956 - +0.5 1,187,959 - +0.2 1,187,960 + +1.1 1,188,089 + -0.2 1,188,094 + +2.9 1,188,185 + MMP_RS06185 0.16 +0.3 1,188,373 + MMP_RS06185 0.50 -1.2 1,188,373 + MMP_RS06185 0.50 -2.5 1,188,403 - MMP_RS06185 0.55 +0.8 1,188,404 + MMP_RS06185 0.55 -0.1 1,188,557 - MMP_RS06185 0.83 -0.7 1,188,576 - MMP_RS06185 0.86 -0.9 1,188,580 - MMP_RS06185 0.87 -0.7 1,188,580 - MMP_RS06185 0.87 +0.5 1,188,598 - -0.2 1,188,598 - +1.2 1,188,599 + -1.4 1,188,653 + +0.9 1,188,655 - -0.5 1,188,739 + MMP_RS06190 0.20 -1.0 1,188,739 + MMP_RS06190 0.20 -1.6 1,188,739 + MMP_RS06190 0.20 -1.3 1,188,740 - MMP_RS06190 0.20 +0.6 1,188,740 - MMP_RS06190 0.20 +1.5 1,188,741 + MMP_RS06190 0.21 -0.6 1,188,777 - MMP_RS06190 0.30 -1.9 1,188,786 + MMP_RS06190 0.32 +0.4 1,188,788 + MMP_RS06190 0.33 -0.9 1,189,071 - +0.6 1,189,072 + -0.7 1,189,074 + -1.4 1,189,085 - +0.2 1,189,090 + -0.6 1,189,094 - -1.5 1,189,095 + -2.0 1,189,095 + +0.9
Or see this region's nucleotide sequence