Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06175

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06165 and MMP_RS06170 are separated by 42 nucleotidesMMP_RS06170 and MMP_RS06175 are separated by 102 nucleotidesMMP_RS06175 and MMP_RS06180 are separated by 135 nucleotides MMP_RS06165: MMP_RS06165 - ABC transporter permease, at 1,183,873 to 1,184,634 _RS06165 MMP_RS06170: MMP_RS06170 - ABC transporter ATP-binding protein, at 1,184,677 to 1,185,441 _RS06170 MMP_RS06175: MMP_RS06175 - winged helix-turn-helix transcriptional regulator, at 1,185,544 to 1,186,398 _RS06175 MMP_RS06180: MMP_RS06180 - diaminopimelate decarboxylase, at 1,186,534 to 1,187,844 _RS06180 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1184.546 kb on - strand, within MMP_RS06165at 1184.551 kb on + strand, within MMP_RS06165at 1184.590 kb on - strandat 1184.590 kb on - strandat 1184.591 kb on + strandat 1184.593 kb on + strandat 1184.605 kb on - strandat 1184.632 kb on - strandat 1184.632 kb on - strandat 1184.783 kb on - strand, within MMP_RS06170at 1185.068 kb on + strand, within MMP_RS06170at 1185.195 kb on + strand, within MMP_RS06170at 1185.275 kb on + strand, within MMP_RS06170at 1185.330 kb on - strand, within MMP_RS06170at 1185.338 kb on - strand, within MMP_RS06170at 1185.339 kb on + strand, within MMP_RS06170at 1185.339 kb on + strand, within MMP_RS06170at 1185.339 kb on + strand, within MMP_RS06170at 1185.339 kb on + strand, within MMP_RS06170at 1185.339 kb on + strand, within MMP_RS06170at 1185.433 kb on - strandat 1185.454 kb on + strandat 1185.460 kb on + strandat 1185.469 kb on - strandat 1185.470 kb on + strandat 1185.470 kb on + strandat 1185.476 kb on + strandat 1185.501 kb on + strandat 1185.585 kb on - strandat 1185.746 kb on + strand, within MMP_RS06175at 1185.822 kb on + strand, within MMP_RS06175at 1185.857 kb on - strand, within MMP_RS06175at 1185.858 kb on + strand, within MMP_RS06175at 1185.876 kb on - strand, within MMP_RS06175at 1185.889 kb on - strand, within MMP_RS06175at 1185.918 kb on + strand, within MMP_RS06175at 1186.206 kb on - strand, within MMP_RS06175at 1186.305 kb on - strand, within MMP_RS06175at 1186.379 kb on + strandat 1186.401 kb on + strandat 1186.443 kb on + strandat 1186.446 kb on + strandat 1186.449 kb on - strandat 1186.461 kb on - strandat 1186.462 kb on + strandat 1186.462 kb on + strandat 1186.462 kb on + strandat 1186.462 kb on + strandat 1186.463 kb on - strandat 1186.464 kb on + strandat 1186.465 kb on - strandat 1186.465 kb on - strandat 1186.466 kb on + strandat 1186.466 kb on + strandat 1186.483 kb on - strandat 1186.483 kb on - strandat 1186.487 kb on - strandat 1186.498 kb on + strandat 1186.614 kb on - strandat 1187.302 kb on - strandat 1187.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,184,546 - MMP_RS06165 0.88 +0.8
1,184,551 + MMP_RS06165 0.89 -2.3
1,184,590 - -2.2
1,184,590 - -2.1
1,184,591 + -1.5
1,184,593 + -0.1
1,184,605 - -2.3
1,184,632 - +0.4
1,184,632 - +0.1
1,184,783 - MMP_RS06170 0.14 -1.0
1,185,068 + MMP_RS06170 0.51 -1.9
1,185,195 + MMP_RS06170 0.68 -1.2
1,185,275 + MMP_RS06170 0.78 -0.6
1,185,330 - MMP_RS06170 0.85 -3.5
1,185,338 - MMP_RS06170 0.86 -5.0
1,185,339 + MMP_RS06170 0.87 -2.7
1,185,339 + MMP_RS06170 0.87 -1.4
1,185,339 + MMP_RS06170 0.87 -1.4
1,185,339 + MMP_RS06170 0.87 -2.7
1,185,339 + MMP_RS06170 0.87 -2.8
1,185,433 - -1.3
1,185,454 + -2.2
1,185,460 + -0.4
1,185,469 - -1.4
1,185,470 + -1.8
1,185,470 + -1.0
1,185,476 + -3.0
1,185,501 + -1.8
1,185,585 - -3.0
1,185,746 + MMP_RS06175 0.24 -2.4
1,185,822 + MMP_RS06175 0.33 -1.7
1,185,857 - MMP_RS06175 0.37 -1.6
1,185,858 + MMP_RS06175 0.37 -2.3
1,185,876 - MMP_RS06175 0.39 -2.4
1,185,889 - MMP_RS06175 0.40 -1.6
1,185,918 + MMP_RS06175 0.44 -2.8
1,186,206 - MMP_RS06175 0.77 -1.0
1,186,305 - MMP_RS06175 0.89 -1.6
1,186,379 + +0.1
1,186,401 + +1.1
1,186,443 + +0.6
1,186,446 + +1.4
1,186,449 - +0.1
1,186,461 - -0.8
1,186,462 + -2.9
1,186,462 + -0.8
1,186,462 + +1.5
1,186,462 + -1.7
1,186,463 - -1.1
1,186,464 + -1.3
1,186,465 - +0.9
1,186,465 - +0.3
1,186,466 + -1.4
1,186,466 + -1.3
1,186,483 - -0.2
1,186,483 - +2.3
1,186,487 - -2.6
1,186,498 + +0.9
1,186,614 - +0.8
1,187,302 - +1.1
1,187,361 + +1.9

Or see this region's nucleotide sequence