Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06165 and MMP_RS06170 are separated by 42 nucleotides MMP_RS06170 and MMP_RS06175 are separated by 102 nucleotides MMP_RS06175 and MMP_RS06180 are separated by 135 nucleotides
MMP_RS06165: MMP_RS06165 - ABC transporter permease, at 1,183,873 to 1,184,634
_RS06165
MMP_RS06170: MMP_RS06170 - ABC transporter ATP-binding protein, at 1,184,677 to 1,185,441
_RS06170
MMP_RS06175: MMP_RS06175 - winged helix-turn-helix transcriptional regulator, at 1,185,544 to 1,186,398
_RS06175
MMP_RS06180: MMP_RS06180 - diaminopimelate decarboxylase, at 1,186,534 to 1,187,844
_RS06180
Position (kb)
1185
1186
1187 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1184.546 kb on - strand, within MMP_RS06165 at 1184.551 kb on + strand, within MMP_RS06165 at 1184.590 kb on - strand at 1184.590 kb on - strand at 1184.591 kb on + strand at 1184.593 kb on + strand at 1184.605 kb on - strand at 1184.632 kb on - strand at 1184.632 kb on - strand at 1184.783 kb on - strand, within MMP_RS06170 at 1185.068 kb on + strand, within MMP_RS06170 at 1185.195 kb on + strand, within MMP_RS06170 at 1185.275 kb on + strand, within MMP_RS06170 at 1185.330 kb on - strand, within MMP_RS06170 at 1185.338 kb on - strand, within MMP_RS06170 at 1185.339 kb on + strand, within MMP_RS06170 at 1185.339 kb on + strand, within MMP_RS06170 at 1185.339 kb on + strand, within MMP_RS06170 at 1185.339 kb on + strand, within MMP_RS06170 at 1185.339 kb on + strand, within MMP_RS06170 at 1185.433 kb on - strand at 1185.454 kb on + strand at 1185.460 kb on + strand at 1185.469 kb on - strand at 1185.470 kb on + strand at 1185.470 kb on + strand at 1185.476 kb on + strand at 1185.501 kb on + strand at 1185.585 kb on - strand at 1185.746 kb on + strand, within MMP_RS06175 at 1185.822 kb on + strand, within MMP_RS06175 at 1185.857 kb on - strand, within MMP_RS06175 at 1185.858 kb on + strand, within MMP_RS06175 at 1185.876 kb on - strand, within MMP_RS06175 at 1185.889 kb on - strand, within MMP_RS06175 at 1185.918 kb on + strand, within MMP_RS06175 at 1186.206 kb on - strand, within MMP_RS06175 at 1186.305 kb on - strand, within MMP_RS06175 at 1186.379 kb on + strand at 1186.401 kb on + strand at 1186.443 kb on + strand at 1186.446 kb on + strand at 1186.449 kb on - strand at 1186.461 kb on - strand at 1186.462 kb on + strand at 1186.462 kb on + strand at 1186.462 kb on + strand at 1186.462 kb on + strand at 1186.463 kb on - strand at 1186.464 kb on + strand at 1186.465 kb on - strand at 1186.465 kb on - strand at 1186.466 kb on + strand at 1186.466 kb on + strand at 1186.483 kb on - strand at 1186.483 kb on - strand at 1186.487 kb on - strand at 1186.498 kb on + strand at 1186.614 kb on - strand at 1187.302 kb on - strand at 1187.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,184,546 - MMP_RS06165 0.88 +0.8 1,184,551 + MMP_RS06165 0.89 -2.3 1,184,590 - -2.2 1,184,590 - -2.1 1,184,591 + -1.5 1,184,593 + -0.1 1,184,605 - -2.3 1,184,632 - +0.4 1,184,632 - +0.1 1,184,783 - MMP_RS06170 0.14 -1.0 1,185,068 + MMP_RS06170 0.51 -1.9 1,185,195 + MMP_RS06170 0.68 -1.2 1,185,275 + MMP_RS06170 0.78 -0.6 1,185,330 - MMP_RS06170 0.85 -3.5 1,185,338 - MMP_RS06170 0.86 -5.0 1,185,339 + MMP_RS06170 0.87 -2.7 1,185,339 + MMP_RS06170 0.87 -1.4 1,185,339 + MMP_RS06170 0.87 -1.4 1,185,339 + MMP_RS06170 0.87 -2.7 1,185,339 + MMP_RS06170 0.87 -2.8 1,185,433 - -1.3 1,185,454 + -2.2 1,185,460 + -0.4 1,185,469 - -1.4 1,185,470 + -1.8 1,185,470 + -1.0 1,185,476 + -3.0 1,185,501 + -1.8 1,185,585 - -3.0 1,185,746 + MMP_RS06175 0.24 -2.4 1,185,822 + MMP_RS06175 0.33 -1.7 1,185,857 - MMP_RS06175 0.37 -1.6 1,185,858 + MMP_RS06175 0.37 -2.3 1,185,876 - MMP_RS06175 0.39 -2.4 1,185,889 - MMP_RS06175 0.40 -1.6 1,185,918 + MMP_RS06175 0.44 -2.8 1,186,206 - MMP_RS06175 0.77 -1.0 1,186,305 - MMP_RS06175 0.89 -1.6 1,186,379 + +0.1 1,186,401 + +1.1 1,186,443 + +0.6 1,186,446 + +1.4 1,186,449 - +0.1 1,186,461 - -0.8 1,186,462 + -2.9 1,186,462 + -0.8 1,186,462 + +1.5 1,186,462 + -1.7 1,186,463 - -1.1 1,186,464 + -1.3 1,186,465 - +0.9 1,186,465 - +0.3 1,186,466 + -1.4 1,186,466 + -1.3 1,186,483 - -0.2 1,186,483 - +2.3 1,186,487 - -2.6 1,186,498 + +0.9 1,186,614 - +0.8 1,187,302 - +1.1 1,187,361 + +1.9
Or see this region's nucleotide sequence