Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06050 and MMP_RS06055 are separated by 219 nucleotides MMP_RS06055 and MMP_RS06060 are separated by 141 nucleotides
MMP_RS06050: MMP_RS06050 - ZIP family metal transporter, at 1,155,931 to 1,156,740
_RS06050
MMP_RS06055: MMP_RS06055 - peroxiredoxin, at 1,156,960 to 1,157,613
_RS06055
MMP_RS06060: MMP_RS06060 - hypothetical protein, at 1,157,755 to 1,158,837
_RS06060
Position (kb)
1156
1157
1158 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1155.961 kb on - strand at 1155.997 kb on + strand at 1156.001 kb on + strand at 1156.001 kb on + strand at 1156.001 kb on + strand at 1156.001 kb on + strand at 1156.042 kb on - strand, within MMP_RS06050 at 1156.043 kb on + strand, within MMP_RS06050 at 1156.075 kb on + strand, within MMP_RS06050 at 1156.137 kb on - strand, within MMP_RS06050 at 1156.347 kb on - strand, within MMP_RS06050 at 1156.348 kb on + strand, within MMP_RS06050 at 1156.350 kb on - strand, within MMP_RS06050 at 1156.421 kb on + strand, within MMP_RS06050 at 1156.455 kb on - strand, within MMP_RS06050 at 1156.651 kb on - strand, within MMP_RS06050 at 1156.652 kb on + strand, within MMP_RS06050 at 1156.781 kb on - strand at 1156.815 kb on - strand at 1156.816 kb on + strand at 1156.820 kb on + strand at 1156.820 kb on + strand at 1156.902 kb on - strand at 1156.902 kb on - strand at 1156.903 kb on + strand at 1156.904 kb on - strand at 1156.904 kb on - strand at 1156.905 kb on + strand at 1156.905 kb on + strand at 1156.905 kb on + strand at 1156.905 kb on + strand at 1156.906 kb on - strand at 1156.906 kb on - strand at 1156.927 kb on - strand at 1156.929 kb on - strand at 1156.930 kb on + strand at 1156.934 kb on + strand at 1156.934 kb on + strand at 1156.964 kb on - strand at 1157.035 kb on - strand, within MMP_RS06055 at 1157.035 kb on - strand, within MMP_RS06055 at 1157.038 kb on + strand, within MMP_RS06055 at 1157.064 kb on + strand, within MMP_RS06055 at 1157.213 kb on - strand, within MMP_RS06055 at 1157.238 kb on + strand, within MMP_RS06055 at 1157.337 kb on + strand, within MMP_RS06055 at 1157.397 kb on - strand, within MMP_RS06055 at 1157.603 kb on - strand at 1157.702 kb on - strand at 1157.703 kb on + strand at 1157.706 kb on - strand at 1157.771 kb on + strand at 1157.837 kb on + strand at 1158.077 kb on - strand, within MMP_RS06060 at 1158.118 kb on + strand, within MMP_RS06060 at 1158.123 kb on - strand, within MMP_RS06060 at 1158.124 kb on + strand, within MMP_RS06060 at 1158.198 kb on + strand, within MMP_RS06060 at 1158.255 kb on - strand, within MMP_RS06060 at 1158.255 kb on - strand, within MMP_RS06060 at 1158.256 kb on + strand, within MMP_RS06060 at 1158.438 kb on - strand, within MMP_RS06060 at 1158.503 kb on + strand, within MMP_RS06060 at 1158.534 kb on - strand, within MMP_RS06060 at 1158.543 kb on + strand, within MMP_RS06060 at 1158.544 kb on - strand, within MMP_RS06060 at 1158.570 kb on + strand, within MMP_RS06060
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,155,961 - +1.5 1,155,997 + +1.4 1,156,001 + +0.8 1,156,001 + +0.9 1,156,001 + -0.4 1,156,001 + +2.8 1,156,042 - MMP_RS06050 0.14 +0.6 1,156,043 + MMP_RS06050 0.14 -3.5 1,156,075 + MMP_RS06050 0.18 -0.6 1,156,137 - MMP_RS06050 0.25 +0.8 1,156,347 - MMP_RS06050 0.51 +0.2 1,156,348 + MMP_RS06050 0.51 -1.5 1,156,350 - MMP_RS06050 0.52 -1.5 1,156,421 + MMP_RS06050 0.60 +1.1 1,156,455 - MMP_RS06050 0.65 +1.7 1,156,651 - MMP_RS06050 0.89 +0.2 1,156,652 + MMP_RS06050 0.89 +0.4 1,156,781 - -0.1 1,156,815 - -3.3 1,156,816 + +0.1 1,156,820 + -2.5 1,156,820 + +1.7 1,156,902 - +1.7 1,156,902 - +0.1 1,156,903 + +0.9 1,156,904 - -0.4 1,156,904 - +1.6 1,156,905 + +1.2 1,156,905 + -1.6 1,156,905 + -1.2 1,156,905 + -1.8 1,156,906 - +1.5 1,156,906 - -1.5 1,156,927 - +1.1 1,156,929 - +1.7 1,156,930 + +0.0 1,156,934 + -2.1 1,156,934 + -1.5 1,156,964 - +1.8 1,157,035 - MMP_RS06055 0.11 -0.4 1,157,035 - MMP_RS06055 0.11 -2.1 1,157,038 + MMP_RS06055 0.12 -1.5 1,157,064 + MMP_RS06055 0.16 +0.5 1,157,213 - MMP_RS06055 0.39 +1.4 1,157,238 + MMP_RS06055 0.43 -1.0 1,157,337 + MMP_RS06055 0.58 -0.3 1,157,397 - MMP_RS06055 0.67 +0.2 1,157,603 - -0.7 1,157,702 - -1.0 1,157,703 + +0.0 1,157,706 - -1.5 1,157,771 + -1.5 1,157,837 + +0.6 1,158,077 - MMP_RS06060 0.30 -2.1 1,158,118 + MMP_RS06060 0.34 +0.4 1,158,123 - MMP_RS06060 0.34 +0.3 1,158,124 + MMP_RS06060 0.34 +0.3 1,158,198 + MMP_RS06060 0.41 -0.9 1,158,255 - MMP_RS06060 0.46 -1.4 1,158,255 - MMP_RS06060 0.46 +0.1 1,158,256 + MMP_RS06060 0.46 +0.0 1,158,438 - MMP_RS06060 0.63 +2.0 1,158,503 + MMP_RS06060 0.69 -0.9 1,158,534 - MMP_RS06060 0.72 +0.8 1,158,543 + MMP_RS06060 0.73 +1.8 1,158,544 - MMP_RS06060 0.73 -0.6 1,158,570 + MMP_RS06060 0.75 +0.9
Or see this region's nucleotide sequence