Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06055

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06050 and MMP_RS06055 are separated by 219 nucleotidesMMP_RS06055 and MMP_RS06060 are separated by 141 nucleotides MMP_RS06050: MMP_RS06050 - ZIP family metal transporter, at 1,155,931 to 1,156,740 _RS06050 MMP_RS06055: MMP_RS06055 - peroxiredoxin, at 1,156,960 to 1,157,613 _RS06055 MMP_RS06060: MMP_RS06060 - hypothetical protein, at 1,157,755 to 1,158,837 _RS06060 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1155.961 kb on - strandat 1155.997 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.001 kb on + strandat 1156.042 kb on - strand, within MMP_RS06050at 1156.043 kb on + strand, within MMP_RS06050at 1156.075 kb on + strand, within MMP_RS06050at 1156.137 kb on - strand, within MMP_RS06050at 1156.347 kb on - strand, within MMP_RS06050at 1156.348 kb on + strand, within MMP_RS06050at 1156.350 kb on - strand, within MMP_RS06050at 1156.421 kb on + strand, within MMP_RS06050at 1156.455 kb on - strand, within MMP_RS06050at 1156.651 kb on - strand, within MMP_RS06050at 1156.652 kb on + strand, within MMP_RS06050at 1156.781 kb on - strandat 1156.815 kb on - strandat 1156.816 kb on + strandat 1156.820 kb on + strandat 1156.820 kb on + strandat 1156.902 kb on - strandat 1156.902 kb on - strandat 1156.903 kb on + strandat 1156.904 kb on - strandat 1156.904 kb on - strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.905 kb on + strandat 1156.906 kb on - strandat 1156.906 kb on - strandat 1156.927 kb on - strandat 1156.929 kb on - strandat 1156.930 kb on + strandat 1156.934 kb on + strandat 1156.934 kb on + strandat 1156.964 kb on - strandat 1157.035 kb on - strand, within MMP_RS06055at 1157.035 kb on - strand, within MMP_RS06055at 1157.038 kb on + strand, within MMP_RS06055at 1157.064 kb on + strand, within MMP_RS06055at 1157.213 kb on - strand, within MMP_RS06055at 1157.238 kb on + strand, within MMP_RS06055at 1157.337 kb on + strand, within MMP_RS06055at 1157.397 kb on - strand, within MMP_RS06055at 1157.603 kb on - strandat 1157.702 kb on - strandat 1157.703 kb on + strandat 1157.706 kb on - strandat 1157.771 kb on + strandat 1157.837 kb on + strandat 1158.077 kb on - strand, within MMP_RS06060at 1158.118 kb on + strand, within MMP_RS06060at 1158.123 kb on - strand, within MMP_RS06060at 1158.124 kb on + strand, within MMP_RS06060at 1158.198 kb on + strand, within MMP_RS06060at 1158.255 kb on - strand, within MMP_RS06060at 1158.255 kb on - strand, within MMP_RS06060at 1158.256 kb on + strand, within MMP_RS06060at 1158.438 kb on - strand, within MMP_RS06060at 1158.503 kb on + strand, within MMP_RS06060at 1158.534 kb on - strand, within MMP_RS06060at 1158.543 kb on + strand, within MMP_RS06060at 1158.544 kb on - strand, within MMP_RS06060at 1158.570 kb on + strand, within MMP_RS06060

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,155,961 - +1.5
1,155,997 + +1.4
1,156,001 + +0.8
1,156,001 + +0.9
1,156,001 + -0.4
1,156,001 + +2.8
1,156,042 - MMP_RS06050 0.14 +0.6
1,156,043 + MMP_RS06050 0.14 -3.5
1,156,075 + MMP_RS06050 0.18 -0.6
1,156,137 - MMP_RS06050 0.25 +0.8
1,156,347 - MMP_RS06050 0.51 +0.2
1,156,348 + MMP_RS06050 0.51 -1.5
1,156,350 - MMP_RS06050 0.52 -1.5
1,156,421 + MMP_RS06050 0.60 +1.1
1,156,455 - MMP_RS06050 0.65 +1.7
1,156,651 - MMP_RS06050 0.89 +0.2
1,156,652 + MMP_RS06050 0.89 +0.4
1,156,781 - -0.1
1,156,815 - -3.3
1,156,816 + +0.1
1,156,820 + -2.5
1,156,820 + +1.7
1,156,902 - +1.7
1,156,902 - +0.1
1,156,903 + +0.9
1,156,904 - -0.4
1,156,904 - +1.6
1,156,905 + +1.2
1,156,905 + -1.6
1,156,905 + -1.2
1,156,905 + -1.8
1,156,906 - +1.5
1,156,906 - -1.5
1,156,927 - +1.1
1,156,929 - +1.7
1,156,930 + +0.0
1,156,934 + -2.1
1,156,934 + -1.5
1,156,964 - +1.8
1,157,035 - MMP_RS06055 0.11 -0.4
1,157,035 - MMP_RS06055 0.11 -2.1
1,157,038 + MMP_RS06055 0.12 -1.5
1,157,064 + MMP_RS06055 0.16 +0.5
1,157,213 - MMP_RS06055 0.39 +1.4
1,157,238 + MMP_RS06055 0.43 -1.0
1,157,337 + MMP_RS06055 0.58 -0.3
1,157,397 - MMP_RS06055 0.67 +0.2
1,157,603 - -0.7
1,157,702 - -1.0
1,157,703 + +0.0
1,157,706 - -1.5
1,157,771 + -1.5
1,157,837 + +0.6
1,158,077 - MMP_RS06060 0.30 -2.1
1,158,118 + MMP_RS06060 0.34 +0.4
1,158,123 - MMP_RS06060 0.34 +0.3
1,158,124 + MMP_RS06060 0.34 +0.3
1,158,198 + MMP_RS06060 0.41 -0.9
1,158,255 - MMP_RS06060 0.46 -1.4
1,158,255 - MMP_RS06060 0.46 +0.1
1,158,256 + MMP_RS06060 0.46 +0.0
1,158,438 - MMP_RS06060 0.63 +2.0
1,158,503 + MMP_RS06060 0.69 -0.9
1,158,534 - MMP_RS06060 0.72 +0.8
1,158,543 + MMP_RS06060 0.73 +1.8
1,158,544 - MMP_RS06060 0.73 -0.6
1,158,570 + MMP_RS06060 0.75 +0.9

Or see this region's nucleotide sequence