Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05925

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05915 and MMP_RS05920 are separated by 174 nucleotidesMMP_RS05920 and MMP_RS05925 are separated by 76 nucleotidesMMP_RS05925 and MMP_RS05930 are separated by 131 nucleotides MMP_RS05915: MMP_RS05915 - amidophosphoribosyltransferase, at 1,135,617 to 1,136,996 _RS05915 MMP_RS05920: MMP_RS05920 - 50S ribosomal protein L37e, at 1,137,171 to 1,137,365 _RS05920 MMP_RS05925: MMP_RS05925 - small nuclear ribonucleoprotein, at 1,137,442 to 1,137,660 _RS05925 MMP_RS05930: MMP_RS05930 - 3-isopropylmalate dehydratase large subunit, at 1,137,792 to 1,139,066 _RS05930 Position (kb) 1137 1138Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1136.487 kb on + strandat 1136.552 kb on - strandat 1136.553 kb on + strandat 1136.630 kb on - strandat 1136.865 kb on - strandat 1137.017 kb on + strandat 1137.024 kb on - strandat 1137.026 kb on - strandat 1137.027 kb on + strandat 1137.029 kb on + strandat 1137.029 kb on + strandat 1137.029 kb on + strandat 1137.082 kb on - strandat 1137.084 kb on - strandat 1137.084 kb on - strandat 1137.084 kb on - strandat 1137.085 kb on + strandat 1137.085 kb on + strandat 1137.085 kb on + strandat 1137.085 kb on + strandat 1137.106 kb on - strandat 1137.117 kb on - strandat 1137.145 kb on + strandat 1137.149 kb on + strandat 1137.149 kb on + strandat 1137.338 kb on - strand, within MMP_RS05920at 1137.387 kb on - strandat 1137.392 kb on - strandat 1137.399 kb on - strandat 1137.445 kb on - strandat 1137.456 kb on + strandat 1137.460 kb on - strandat 1137.460 kb on - strandat 1137.476 kb on + strand, within MMP_RS05925at 1137.554 kb on - strand, within MMP_RS05925at 1137.554 kb on - strand, within MMP_RS05925at 1137.562 kb on - strand, within MMP_RS05925at 1137.593 kb on + strand, within MMP_RS05925at 1137.624 kb on - strand, within MMP_RS05925at 1137.660 kb on - strandat 1137.678 kb on - strandat 1137.732 kb on + strandat 1137.734 kb on + strandat 1137.748 kb on + strandat 1137.748 kb on + strandat 1137.776 kb on + strandat 1137.777 kb on - strandat 1137.903 kb on + strandat 1137.942 kb on + strand, within MMP_RS05930at 1138.030 kb on - strand, within MMP_RS05930at 1138.061 kb on - strand, within MMP_RS05930at 1138.400 kb on - strand, within MMP_RS05930at 1138.498 kb on + strand, within MMP_RS05930

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,136,487 + +1.3
1,136,552 - +0.7
1,136,553 + -0.6
1,136,630 - -0.7
1,136,865 - -0.7
1,137,017 + -0.7
1,137,024 - +0.5
1,137,026 - -0.9
1,137,027 + +1.0
1,137,029 + -0.8
1,137,029 + -0.9
1,137,029 + -1.2
1,137,082 - +0.4
1,137,084 - -3.7
1,137,084 - -1.7
1,137,084 - -1.0
1,137,085 + +0.7
1,137,085 + +1.0
1,137,085 + -0.3
1,137,085 + -1.3
1,137,106 - +1.5
1,137,117 - +2.1
1,137,145 + -2.5
1,137,149 + +1.0
1,137,149 + +0.6
1,137,338 - MMP_RS05920 0.86 -1.0
1,137,387 - -0.7
1,137,392 - -0.9
1,137,399 - -1.5
1,137,445 - -1.5
1,137,456 + -1.1
1,137,460 - -1.3
1,137,460 - -0.5
1,137,476 + MMP_RS05925 0.16 -1.2
1,137,554 - MMP_RS05925 0.51 +0.5
1,137,554 - MMP_RS05925 0.51 +1.1
1,137,562 - MMP_RS05925 0.55 -1.2
1,137,593 + MMP_RS05925 0.69 -0.9
1,137,624 - MMP_RS05925 0.83 -3.1
1,137,660 - +0.3
1,137,678 - +1.8
1,137,732 + -1.0
1,137,734 + -1.4
1,137,748 + +2.7
1,137,748 + -1.8
1,137,776 + +4.4
1,137,777 - -1.3
1,137,903 + -2.6
1,137,942 + MMP_RS05930 0.12 +0.5
1,138,030 - MMP_RS05930 0.19 +1.0
1,138,061 - MMP_RS05930 0.21 -0.3
1,138,400 - MMP_RS05930 0.48 -0.5
1,138,498 + MMP_RS05930 0.55 -0.8

Or see this region's nucleotide sequence