Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05635

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05630 and MMP_RS05635 are separated by 30 nucleotidesMMP_RS05635 and MMP_RS05640 are separated by 124 nucleotides MMP_RS05630: MMP_RS05630 - flippase, at 1,081,000 to 1,082,502 _RS05630 MMP_RS05635: MMP_RS05635 - NAD-dependent epimerase/dehydratase family protein, at 1,082,533 to 1,083,411 _RS05635 MMP_RS05640: MMP_RS05640 - UTP--glucose-1-phosphate uridylyltransferase GalU, at 1,083,536 to 1,084,384 _RS05640 Position (kb) 1082 1083 1084Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 1081.631 kb on + strandat 1081.663 kb on - strandat 1081.865 kb on + strandat 1081.895 kb on + strandat 1081.921 kb on + strandat 1081.958 kb on - strandat 1081.990 kb on - strandat 1082.085 kb on + strandat 1082.155 kb on - strandat 1082.160 kb on + strandat 1082.281 kb on - strandat 1082.331 kb on - strandat 1082.349 kb on - strandat 1082.427 kb on + strandat 1082.495 kb on - strandat 1082.534 kb on - strandat 1082.545 kb on + strandat 1082.590 kb on + strandat 1082.595 kb on - strandat 1082.785 kb on + strand, within MMP_RS05635at 1082.859 kb on - strand, within MMP_RS05635at 1082.948 kb on - strand, within MMP_RS05635at 1082.948 kb on - strand, within MMP_RS05635at 1082.948 kb on - strand, within MMP_RS05635at 1082.956 kb on + strand, within MMP_RS05635at 1082.972 kb on - strand, within MMP_RS05635at 1082.972 kb on - strand, within MMP_RS05635at 1083.024 kb on - strand, within MMP_RS05635at 1083.088 kb on - strand, within MMP_RS05635at 1083.108 kb on + strand, within MMP_RS05635at 1083.217 kb on - strand, within MMP_RS05635at 1083.309 kb on - strand, within MMP_RS05635at 1083.314 kb on + strand, within MMP_RS05635at 1083.352 kb on - strandat 1083.357 kb on - strandat 1083.358 kb on + strandat 1083.358 kb on + strandat 1083.397 kb on - strandat 1083.431 kb on - strandat 1083.431 kb on - strandat 1083.435 kb on + strandat 1083.435 kb on + strandat 1083.438 kb on - strandat 1083.438 kb on - strandat 1083.439 kb on + strandat 1083.439 kb on + strandat 1083.458 kb on - strandat 1083.458 kb on - strandat 1083.458 kb on - strandat 1083.459 kb on + strandat 1083.459 kb on + strandat 1083.469 kb on - strandat 1083.469 kb on - strandat 1083.472 kb on + strandat 1083.472 kb on + strandat 1083.472 kb on + strandat 1083.489 kb on + strandat 1083.489 kb on + strandat 1083.490 kb on - strandat 1083.490 kb on - strandat 1083.490 kb on - strandat 1083.491 kb on + strandat 1083.491 kb on + strandat 1083.491 kb on + strandat 1083.491 kb on + strandat 1083.497 kb on - strandat 1083.497 kb on - strandat 1083.532 kb on - strandat 1083.561 kb on - strandat 1083.623 kb on + strand, within MMP_RS05640at 1083.708 kb on + strand, within MMP_RS05640at 1083.773 kb on - strand, within MMP_RS05640at 1083.774 kb on + strand, within MMP_RS05640at 1083.778 kb on + strand, within MMP_RS05640at 1083.816 kb on + strand, within MMP_RS05640at 1083.816 kb on + strand, within MMP_RS05640at 1083.892 kb on - strand, within MMP_RS05640at 1084.008 kb on + strand, within MMP_RS05640at 1084.087 kb on - strand, within MMP_RS05640at 1084.088 kb on + strand, within MMP_RS05640at 1084.089 kb on - strand, within MMP_RS05640at 1084.092 kb on - strand, within MMP_RS05640at 1084.222 kb on - strand, within MMP_RS05640at 1084.235 kb on + strand, within MMP_RS05640at 1084.268 kb on - strand, within MMP_RS05640at 1084.269 kb on + strand, within MMP_RS05640at 1084.272 kb on - strand, within MMP_RS05640at 1084.273 kb on + strand, within MMP_RS05640at 1084.278 kb on + strand, within MMP_RS05640at 1084.389 kb on - strandat 1084.405 kb on - strandat 1084.405 kb on - strandat 1084.411 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,081,631 + +2.0
1,081,663 - -1.2
1,081,865 + -0.2
1,081,895 + +0.5
1,081,921 + -0.0
1,081,958 - -0.0
1,081,990 - +2.6
1,082,085 + -1.4
1,082,155 - -0.9
1,082,160 + -1.0
1,082,281 - -1.0
1,082,331 - -1.6
1,082,349 - +0.8
1,082,427 + -0.9
1,082,495 - -1.4
1,082,534 - +2.3
1,082,545 + +0.5
1,082,590 + +0.0
1,082,595 - -0.2
1,082,785 + MMP_RS05635 0.29 -3.6
1,082,859 - MMP_RS05635 0.37 -1.5
1,082,948 - MMP_RS05635 0.47 +0.1
1,082,948 - MMP_RS05635 0.47 -2.9
1,082,948 - MMP_RS05635 0.47 -2.3
1,082,956 + MMP_RS05635 0.48 -0.9
1,082,972 - MMP_RS05635 0.50 -1.1
1,082,972 - MMP_RS05635 0.50 -0.3
1,083,024 - MMP_RS05635 0.56 +0.9
1,083,088 - MMP_RS05635 0.63 -1.1
1,083,108 + MMP_RS05635 0.65 -0.6
1,083,217 - MMP_RS05635 0.78 +0.8
1,083,309 - MMP_RS05635 0.88 -1.9
1,083,314 + MMP_RS05635 0.89 -0.1
1,083,352 - -1.1
1,083,357 - -1.8
1,083,358 + -0.1
1,083,358 + +0.5
1,083,397 - +1.2
1,083,431 - +1.1
1,083,431 - -1.1
1,083,435 + +1.1
1,083,435 + +1.5
1,083,438 - +0.2
1,083,438 - +2.2
1,083,439 + +0.2
1,083,439 + -0.7
1,083,458 - +1.1
1,083,458 - +0.9
1,083,458 - +1.7
1,083,459 + -1.2
1,083,459 + +1.1
1,083,469 - +0.3
1,083,469 - +0.4
1,083,472 + +0.3
1,083,472 + -0.1
1,083,472 + +3.3
1,083,489 + +0.5
1,083,489 + -0.5
1,083,490 - -1.0
1,083,490 - +1.4
1,083,490 - +0.9
1,083,491 + +1.1
1,083,491 + +2.2
1,083,491 + -1.2
1,083,491 + +1.8
1,083,497 - +2.9
1,083,497 - -0.4
1,083,532 - -2.7
1,083,561 - +6.1
1,083,623 + MMP_RS05640 0.10 +0.7
1,083,708 + MMP_RS05640 0.20 +0.7
1,083,773 - MMP_RS05640 0.28 +4.9
1,083,774 + MMP_RS05640 0.28 +2.3
1,083,778 + MMP_RS05640 0.29 +5.0
1,083,816 + MMP_RS05640 0.33 +4.0
1,083,816 + MMP_RS05640 0.33 +5.4
1,083,892 - MMP_RS05640 0.42 -0.5
1,084,008 + MMP_RS05640 0.56 -1.8
1,084,087 - MMP_RS05640 0.65 -2.1
1,084,088 + MMP_RS05640 0.65 +4.2
1,084,089 - MMP_RS05640 0.65 +3.3
1,084,092 - MMP_RS05640 0.65 +7.2
1,084,222 - MMP_RS05640 0.81 -0.2
1,084,235 + MMP_RS05640 0.82 -0.3
1,084,268 - MMP_RS05640 0.86 +5.2
1,084,269 + MMP_RS05640 0.86 -0.9
1,084,272 - MMP_RS05640 0.87 -0.6
1,084,273 + MMP_RS05640 0.87 -1.0
1,084,278 + MMP_RS05640 0.87 +3.4
1,084,389 - +0.3
1,084,405 - +4.7
1,084,405 - +3.8
1,084,411 + +4.1

Or see this region's nucleotide sequence