Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05580

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05575 and MMP_RS05580 are separated by 3 nucleotidesMMP_RS05580 and MMP_RS08890 are separated by 173 nucleotides MMP_RS05575: MMP_RS05575 - hypothetical protein, at 1,068,603 to 1,069,547 _RS05575 MMP_RS05580: MMP_RS05580 - glycosyltransferase, at 1,069,551 to 1,070,360 _RS05580 MMP_RS08890: MMP_RS08890 - glycosyltransferase family 4 protein, at 1,070,534 to 1,071,628 _RS08890 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1068.568 kb on - strandat 1068.569 kb on + strandat 1068.572 kb on - strandat 1068.573 kb on + strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.641 kb on - strandat 1068.676 kb on - strandat 1068.683 kb on - strandat 1068.687 kb on - strandat 1068.687 kb on - strandat 1068.791 kb on - strand, within MMP_RS05575at 1068.827 kb on - strand, within MMP_RS05575at 1068.851 kb on + strand, within MMP_RS05575at 1069.044 kb on - strand, within MMP_RS05575at 1069.045 kb on + strand, within MMP_RS05575at 1069.071 kb on + strand, within MMP_RS05575at 1069.071 kb on + strand, within MMP_RS05575at 1069.076 kb on + strand, within MMP_RS05575at 1069.084 kb on + strand, within MMP_RS05575at 1069.088 kb on - strand, within MMP_RS05575at 1069.091 kb on + strand, within MMP_RS05575at 1069.091 kb on + strand, within MMP_RS05575at 1069.095 kb on + strand, within MMP_RS05575at 1069.105 kb on - strand, within MMP_RS05575at 1069.120 kb on - strand, within MMP_RS05575at 1069.261 kb on + strand, within MMP_RS05575at 1069.323 kb on - strand, within MMP_RS05575at 1069.324 kb on + strand, within MMP_RS05575at 1069.351 kb on + strand, within MMP_RS05575at 1069.352 kb on - strand, within MMP_RS05575at 1069.352 kb on - strand, within MMP_RS05575at 1069.355 kb on - strand, within MMP_RS05575at 1069.356 kb on + strand, within MMP_RS05575at 1069.415 kb on + strand, within MMP_RS05575at 1069.444 kb on - strand, within MMP_RS05575at 1069.450 kb on - strand, within MMP_RS05575at 1069.451 kb on + strand, within MMP_RS05575at 1069.468 kb on - strandat 1069.469 kb on + strandat 1069.469 kb on + strandat 1069.473 kb on - strandat 1069.474 kb on + strandat 1069.474 kb on + strandat 1069.478 kb on - strandat 1069.479 kb on + strandat 1069.496 kb on - strandat 1069.496 kb on - strandat 1069.496 kb on - strandat 1069.500 kb on - strandat 1069.501 kb on + strandat 1069.501 kb on + strandat 1069.546 kb on + strandat 1069.550 kb on - strandat 1069.550 kb on - strandat 1069.592 kb on - strandat 1069.666 kb on - strand, within MMP_RS05580at 1069.683 kb on + strand, within MMP_RS05580at 1069.704 kb on + strand, within MMP_RS05580at 1069.705 kb on - strand, within MMP_RS05580at 1069.713 kb on - strand, within MMP_RS05580at 1069.739 kb on - strand, within MMP_RS05580at 1069.742 kb on + strand, within MMP_RS05580at 1069.763 kb on + strand, within MMP_RS05580at 1069.780 kb on + strand, within MMP_RS05580at 1069.780 kb on + strand, within MMP_RS05580at 1069.780 kb on + strand, within MMP_RS05580at 1069.780 kb on + strand, within MMP_RS05580at 1069.781 kb on - strand, within MMP_RS05580at 1069.781 kb on - strand, within MMP_RS05580at 1069.782 kb on + strand, within MMP_RS05580at 1069.782 kb on + strand, within MMP_RS05580at 1069.782 kb on + strand, within MMP_RS05580at 1069.782 kb on + strand, within MMP_RS05580at 1069.784 kb on - strand, within MMP_RS05580at 1069.784 kb on - strand, within MMP_RS05580at 1069.784 kb on - strand, within MMP_RS05580at 1069.784 kb on - strand, within MMP_RS05580at 1069.785 kb on + strand, within MMP_RS05580at 1069.785 kb on + strand, within MMP_RS05580at 1069.785 kb on + strand, within MMP_RS05580at 1069.785 kb on + strand, within MMP_RS05580at 1069.785 kb on + strand, within MMP_RS05580at 1069.792 kb on - strand, within MMP_RS05580at 1069.793 kb on + strand, within MMP_RS05580at 1069.849 kb on - strand, within MMP_RS05580at 1069.865 kb on + strand, within MMP_RS05580at 1069.868 kb on - strand, within MMP_RS05580at 1069.868 kb on - strand, within MMP_RS05580at 1069.870 kb on - strand, within MMP_RS05580at 1069.882 kb on + strand, within MMP_RS05580at 1069.929 kb on - strand, within MMP_RS05580at 1069.982 kb on - strand, within MMP_RS05580at 1069.983 kb on + strand, within MMP_RS05580at 1069.989 kb on + strand, within MMP_RS05580at 1069.992 kb on + strand, within MMP_RS05580at 1070.079 kb on - strand, within MMP_RS05580at 1070.079 kb on - strand, within MMP_RS05580at 1070.080 kb on + strand, within MMP_RS05580at 1070.080 kb on + strand, within MMP_RS05580at 1070.112 kb on + strand, within MMP_RS05580at 1070.132 kb on - strand, within MMP_RS05580at 1070.133 kb on + strand, within MMP_RS05580at 1070.133 kb on + strand, within MMP_RS05580at 1070.216 kb on + strand, within MMP_RS05580at 1070.219 kb on - strand, within MMP_RS05580at 1070.223 kb on + strand, within MMP_RS05580at 1070.332 kb on - strandat 1070.333 kb on + strandat 1070.333 kb on + strandat 1070.335 kb on - strandat 1070.346 kb on - strandat 1070.347 kb on + strandat 1070.348 kb on - strandat 1070.348 kb on - strandat 1070.348 kb on - strandat 1070.359 kb on + strandat 1070.370 kb on - strandat 1070.373 kb on - strandat 1070.429 kb on - strandat 1070.438 kb on + strandat 1070.466 kb on - strandat 1070.470 kb on + strandat 1070.478 kb on - strandat 1070.479 kb on + strandat 1070.479 kb on + strandat 1070.548 kb on + strandat 1070.548 kb on + strandat 1070.561 kb on + strandat 1070.614 kb on - strandat 1070.629 kb on - strandat 1070.629 kb on - strandat 1070.632 kb on - strandat 1070.632 kb on - strandat 1070.633 kb on + strandat 1070.634 kb on - strandat 1070.634 kb on - strandat 1070.688 kb on - strand, within MMP_RS08890at 1070.688 kb on - strand, within MMP_RS08890at 1070.688 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.694 kb on - strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.695 kb on + strand, within MMP_RS08890at 1070.698 kb on - strand, within MMP_RS08890at 1070.699 kb on + strand, within MMP_RS08890at 1070.699 kb on + strand, within MMP_RS08890at 1070.699 kb on + strand, within MMP_RS08890at 1070.699 kb on + strand, within MMP_RS08890at 1070.734 kb on - strand, within MMP_RS08890at 1070.740 kb on - strand, within MMP_RS08890at 1070.741 kb on + strand, within MMP_RS08890at 1070.741 kb on + strand, within MMP_RS08890at 1070.741 kb on + strand, within MMP_RS08890at 1070.899 kb on + strand, within MMP_RS08890at 1070.941 kb on + strand, within MMP_RS08890at 1070.991 kb on - strand, within MMP_RS08890at 1070.992 kb on + strand, within MMP_RS08890at 1070.995 kb on - strand, within MMP_RS08890at 1071.056 kb on + strand, within MMP_RS08890at 1071.183 kb on - strand, within MMP_RS08890at 1071.187 kb on - strand, within MMP_RS08890at 1071.187 kb on - strand, within MMP_RS08890at 1071.187 kb on - strand, within MMP_RS08890at 1071.188 kb on + strand, within MMP_RS08890at 1071.188 kb on + strand, within MMP_RS08890at 1071.189 kb on - strand, within MMP_RS08890at 1071.189 kb on - strand, within MMP_RS08890at 1071.207 kb on - strand, within MMP_RS08890at 1071.208 kb on + strand, within MMP_RS08890at 1071.231 kb on + strand, within MMP_RS08890at 1071.231 kb on + strand, within MMP_RS08890at 1071.239 kb on + strand, within MMP_RS08890at 1071.244 kb on + strand, within MMP_RS08890at 1071.244 kb on + strand, within MMP_RS08890at 1071.244 kb on + strand, within MMP_RS08890at 1071.301 kb on - strand, within MMP_RS08890

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,068,568 - -0.9
1,068,569 + +1.5
1,068,572 - +0.3
1,068,573 + +0.4
1,068,574 - -1.2
1,068,574 - -2.3
1,068,574 - +2.4
1,068,574 - +0.0
1,068,641 - -2.3
1,068,676 - +3.4
1,068,683 - +0.7
1,068,687 - -0.6
1,068,687 - +0.1
1,068,791 - MMP_RS05575 0.20 +1.7
1,068,827 - MMP_RS05575 0.24 -1.2
1,068,851 + MMP_RS05575 0.26 +1.1
1,069,044 - MMP_RS05575 0.47 -2.7
1,069,045 + MMP_RS05575 0.47 +1.7
1,069,071 + MMP_RS05575 0.50 +1.6
1,069,071 + MMP_RS05575 0.50 -2.9
1,069,076 + MMP_RS05575 0.50 +1.0
1,069,084 + MMP_RS05575 0.51 +1.5
1,069,088 - MMP_RS05575 0.51 -1.1
1,069,091 + MMP_RS05575 0.52 +2.5
1,069,091 + MMP_RS05575 0.52 -0.6
1,069,095 + MMP_RS05575 0.52 -1.8
1,069,105 - MMP_RS05575 0.53 -1.5
1,069,120 - MMP_RS05575 0.55 -2.0
1,069,261 + MMP_RS05575 0.70 -0.3
1,069,323 - MMP_RS05575 0.76 +1.0
1,069,324 + MMP_RS05575 0.76 +0.2
1,069,351 + MMP_RS05575 0.79 -1.3
1,069,352 - MMP_RS05575 0.79 +0.0
1,069,352 - MMP_RS05575 0.79 -0.6
1,069,355 - MMP_RS05575 0.80 -2.5
1,069,356 + MMP_RS05575 0.80 -0.3
1,069,415 + MMP_RS05575 0.86 -0.1
1,069,444 - MMP_RS05575 0.89 +0.6
1,069,450 - MMP_RS05575 0.90 -0.4
1,069,451 + MMP_RS05575 0.90 +0.3
1,069,468 - -1.5
1,069,469 + +0.3
1,069,469 + +1.3
1,069,473 - -0.7
1,069,474 + +1.1
1,069,474 + +1.1
1,069,478 - -0.2
1,069,479 + -2.4
1,069,496 - -0.0
1,069,496 - -2.0
1,069,496 - -0.7
1,069,500 - +1.1
1,069,501 + -2.9
1,069,501 + +0.9
1,069,546 + -2.6
1,069,550 - -1.8
1,069,550 - -0.0
1,069,592 - -0.6
1,069,666 - MMP_RS05580 0.14 -2.4
1,069,683 + MMP_RS05580 0.16 -2.4
1,069,704 + MMP_RS05580 0.19 -1.2
1,069,705 - MMP_RS05580 0.19 -1.4
1,069,713 - MMP_RS05580 0.20 -1.4
1,069,739 - MMP_RS05580 0.23 -2.5
1,069,742 + MMP_RS05580 0.24 +0.3
1,069,763 + MMP_RS05580 0.26 -0.3
1,069,780 + MMP_RS05580 0.28 -0.8
1,069,780 + MMP_RS05580 0.28 -0.4
1,069,780 + MMP_RS05580 0.28 -2.1
1,069,780 + MMP_RS05580 0.28 -0.5
1,069,781 - MMP_RS05580 0.28 -1.3
1,069,781 - MMP_RS05580 0.28 -2.1
1,069,782 + MMP_RS05580 0.29 -2.1
1,069,782 + MMP_RS05580 0.29 -0.8
1,069,782 + MMP_RS05580 0.29 -1.5
1,069,782 + MMP_RS05580 0.29 -2.3
1,069,784 - MMP_RS05580 0.29 -0.9
1,069,784 - MMP_RS05580 0.29 +1.0
1,069,784 - MMP_RS05580 0.29 -1.3
1,069,784 - MMP_RS05580 0.29 -1.3
1,069,785 + MMP_RS05580 0.29 -1.1
1,069,785 + MMP_RS05580 0.29 -1.7
1,069,785 + MMP_RS05580 0.29 +4.0
1,069,785 + MMP_RS05580 0.29 +1.8
1,069,785 + MMP_RS05580 0.29 +0.4
1,069,792 - MMP_RS05580 0.30 -0.4
1,069,793 + MMP_RS05580 0.30 -1.2
1,069,849 - MMP_RS05580 0.37 -1.1
1,069,865 + MMP_RS05580 0.39 +0.9
1,069,868 - MMP_RS05580 0.39 +0.6
1,069,868 - MMP_RS05580 0.39 -0.5
1,069,870 - MMP_RS05580 0.39 -0.7
1,069,882 + MMP_RS05580 0.41 -1.5
1,069,929 - MMP_RS05580 0.47 -0.7
1,069,982 - MMP_RS05580 0.53 -1.0
1,069,983 + MMP_RS05580 0.53 -2.4
1,069,989 + MMP_RS05580 0.54 -1.4
1,069,992 + MMP_RS05580 0.54 +0.5
1,070,079 - MMP_RS05580 0.65 -1.4
1,070,079 - MMP_RS05580 0.65 -0.3
1,070,080 + MMP_RS05580 0.65 -2.9
1,070,080 + MMP_RS05580 0.65 +0.1
1,070,112 + MMP_RS05580 0.69 -1.3
1,070,132 - MMP_RS05580 0.72 -1.3
1,070,133 + MMP_RS05580 0.72 -4.0
1,070,133 + MMP_RS05580 0.72 -3.0
1,070,216 + MMP_RS05580 0.82 -1.1
1,070,219 - MMP_RS05580 0.82 +0.9
1,070,223 + MMP_RS05580 0.83 -1.9
1,070,332 - +1.0
1,070,333 + -1.2
1,070,333 + -2.2
1,070,335 - -1.4
1,070,346 - -1.1
1,070,347 + +0.3
1,070,348 - -0.2
1,070,348 - -0.5
1,070,348 - +0.8
1,070,359 + -1.4
1,070,370 - -0.7
1,070,373 - +1.1
1,070,429 - -1.4
1,070,438 + -2.1
1,070,466 - -0.4
1,070,470 + -1.6
1,070,478 - +1.0
1,070,479 + -0.7
1,070,479 + -2.4
1,070,548 + -0.4
1,070,548 + +2.2
1,070,561 + -0.7
1,070,614 - -0.1
1,070,629 - +1.5
1,070,629 - +1.0
1,070,632 - +1.5
1,070,632 - +0.3
1,070,633 + +0.5
1,070,634 - +1.2
1,070,634 - +0.9
1,070,688 - MMP_RS08890 0.14 -0.9
1,070,688 - MMP_RS08890 0.14 +3.7
1,070,688 - MMP_RS08890 0.14 +2.1
1,070,694 - MMP_RS08890 0.15 +0.6
1,070,694 - MMP_RS08890 0.15 +0.7
1,070,694 - MMP_RS08890 0.15 -0.3
1,070,694 - MMP_RS08890 0.15 +1.1
1,070,694 - MMP_RS08890 0.15 -1.9
1,070,694 - MMP_RS08890 0.15 -0.1
1,070,694 - MMP_RS08890 0.15 +0.4
1,070,695 + MMP_RS08890 0.15 +2.8
1,070,695 + MMP_RS08890 0.15 +0.5
1,070,695 + MMP_RS08890 0.15 +2.0
1,070,695 + MMP_RS08890 0.15 +1.1
1,070,695 + MMP_RS08890 0.15 +0.2
1,070,695 + MMP_RS08890 0.15 -2.2
1,070,695 + MMP_RS08890 0.15 +1.2
1,070,698 - MMP_RS08890 0.15 +3.4
1,070,699 + MMP_RS08890 0.15 +0.3
1,070,699 + MMP_RS08890 0.15 +0.5
1,070,699 + MMP_RS08890 0.15 +2.7
1,070,699 + MMP_RS08890 0.15 -2.7
1,070,734 - MMP_RS08890 0.18 -0.1
1,070,740 - MMP_RS08890 0.19 -1.9
1,070,741 + MMP_RS08890 0.19 +0.6
1,070,741 + MMP_RS08890 0.19 +0.8
1,070,741 + MMP_RS08890 0.19 -0.9
1,070,899 + MMP_RS08890 0.33 +0.9
1,070,941 + MMP_RS08890 0.37 +1.4
1,070,991 - MMP_RS08890 0.42 +1.4
1,070,992 + MMP_RS08890 0.42 -0.8
1,070,995 - MMP_RS08890 0.42 -3.5
1,071,056 + MMP_RS08890 0.48 +2.4
1,071,183 - MMP_RS08890 0.59 -1.0
1,071,187 - MMP_RS08890 0.60 +1.6
1,071,187 - MMP_RS08890 0.60 -1.2
1,071,187 - MMP_RS08890 0.60 +0.1
1,071,188 + MMP_RS08890 0.60 +2.7
1,071,188 + MMP_RS08890 0.60 +0.4
1,071,189 - MMP_RS08890 0.60 -1.7
1,071,189 - MMP_RS08890 0.60 -1.0
1,071,207 - MMP_RS08890 0.61 -0.8
1,071,208 + MMP_RS08890 0.62 -1.6
1,071,231 + MMP_RS08890 0.64 +0.1
1,071,231 + MMP_RS08890 0.64 +0.5
1,071,239 + MMP_RS08890 0.64 -1.6
1,071,244 + MMP_RS08890 0.65 +0.5
1,071,244 + MMP_RS08890 0.65 +1.6
1,071,244 + MMP_RS08890 0.65 -0.5
1,071,301 - MMP_RS08890 0.70 +0.3

Or see this region's nucleotide sequence