Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05575 and MMP_RS05580 are separated by 3 nucleotides MMP_RS05580 and MMP_RS08890 are separated by 173 nucleotides
MMP_RS05575: MMP_RS05575 - hypothetical protein, at 1,068,603 to 1,069,547
_RS05575
MMP_RS05580: MMP_RS05580 - glycosyltransferase, at 1,069,551 to 1,070,360
_RS05580
MMP_RS08890: MMP_RS08890 - glycosyltransferase family 4 protein, at 1,070,534 to 1,071,628
_RS08890
Position (kb)
1069
1070
1071 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1068.568 kb on - strand at 1068.569 kb on + strand at 1068.572 kb on - strand at 1068.573 kb on + strand at 1068.574 kb on - strand at 1068.574 kb on - strand at 1068.574 kb on - strand at 1068.574 kb on - strand at 1068.641 kb on - strand at 1068.676 kb on - strand at 1068.683 kb on - strand at 1068.687 kb on - strand at 1068.687 kb on - strand at 1068.791 kb on - strand, within MMP_RS05575 at 1068.827 kb on - strand, within MMP_RS05575 at 1068.851 kb on + strand, within MMP_RS05575 at 1069.044 kb on - strand, within MMP_RS05575 at 1069.045 kb on + strand, within MMP_RS05575 at 1069.071 kb on + strand, within MMP_RS05575 at 1069.071 kb on + strand, within MMP_RS05575 at 1069.076 kb on + strand, within MMP_RS05575 at 1069.084 kb on + strand, within MMP_RS05575 at 1069.088 kb on - strand, within MMP_RS05575 at 1069.091 kb on + strand, within MMP_RS05575 at 1069.091 kb on + strand, within MMP_RS05575 at 1069.095 kb on + strand, within MMP_RS05575 at 1069.105 kb on - strand, within MMP_RS05575 at 1069.120 kb on - strand, within MMP_RS05575 at 1069.261 kb on + strand, within MMP_RS05575 at 1069.323 kb on - strand, within MMP_RS05575 at 1069.324 kb on + strand, within MMP_RS05575 at 1069.351 kb on + strand, within MMP_RS05575 at 1069.352 kb on - strand, within MMP_RS05575 at 1069.352 kb on - strand, within MMP_RS05575 at 1069.355 kb on - strand, within MMP_RS05575 at 1069.356 kb on + strand, within MMP_RS05575 at 1069.415 kb on + strand, within MMP_RS05575 at 1069.444 kb on - strand, within MMP_RS05575 at 1069.450 kb on - strand, within MMP_RS05575 at 1069.451 kb on + strand, within MMP_RS05575 at 1069.468 kb on - strand at 1069.469 kb on + strand at 1069.469 kb on + strand at 1069.473 kb on - strand at 1069.474 kb on + strand at 1069.474 kb on + strand at 1069.478 kb on - strand at 1069.479 kb on + strand at 1069.496 kb on - strand at 1069.496 kb on - strand at 1069.496 kb on - strand at 1069.500 kb on - strand at 1069.501 kb on + strand at 1069.501 kb on + strand at 1069.546 kb on + strand at 1069.550 kb on - strand at 1069.550 kb on - strand at 1069.592 kb on - strand at 1069.666 kb on - strand, within MMP_RS05580 at 1069.683 kb on + strand, within MMP_RS05580 at 1069.704 kb on + strand, within MMP_RS05580 at 1069.705 kb on - strand, within MMP_RS05580 at 1069.713 kb on - strand, within MMP_RS05580 at 1069.739 kb on - strand, within MMP_RS05580 at 1069.742 kb on + strand, within MMP_RS05580 at 1069.763 kb on + strand, within MMP_RS05580 at 1069.780 kb on + strand, within MMP_RS05580 at 1069.780 kb on + strand, within MMP_RS05580 at 1069.780 kb on + strand, within MMP_RS05580 at 1069.780 kb on + strand, within MMP_RS05580 at 1069.781 kb on - strand, within MMP_RS05580 at 1069.781 kb on - strand, within MMP_RS05580 at 1069.782 kb on + strand, within MMP_RS05580 at 1069.782 kb on + strand, within MMP_RS05580 at 1069.782 kb on + strand, within MMP_RS05580 at 1069.782 kb on + strand, within MMP_RS05580 at 1069.784 kb on - strand, within MMP_RS05580 at 1069.784 kb on - strand, within MMP_RS05580 at 1069.784 kb on - strand, within MMP_RS05580 at 1069.784 kb on - strand, within MMP_RS05580 at 1069.785 kb on + strand, within MMP_RS05580 at 1069.785 kb on + strand, within MMP_RS05580 at 1069.785 kb on + strand, within MMP_RS05580 at 1069.785 kb on + strand, within MMP_RS05580 at 1069.785 kb on + strand, within MMP_RS05580 at 1069.792 kb on - strand, within MMP_RS05580 at 1069.793 kb on + strand, within MMP_RS05580 at 1069.849 kb on - strand, within MMP_RS05580 at 1069.865 kb on + strand, within MMP_RS05580 at 1069.868 kb on - strand, within MMP_RS05580 at 1069.868 kb on - strand, within MMP_RS05580 at 1069.870 kb on - strand, within MMP_RS05580 at 1069.882 kb on + strand, within MMP_RS05580 at 1069.929 kb on - strand, within MMP_RS05580 at 1069.982 kb on - strand, within MMP_RS05580 at 1069.983 kb on + strand, within MMP_RS05580 at 1069.989 kb on + strand, within MMP_RS05580 at 1069.992 kb on + strand, within MMP_RS05580 at 1070.079 kb on - strand, within MMP_RS05580 at 1070.079 kb on - strand, within MMP_RS05580 at 1070.080 kb on + strand, within MMP_RS05580 at 1070.080 kb on + strand, within MMP_RS05580 at 1070.112 kb on + strand, within MMP_RS05580 at 1070.132 kb on - strand, within MMP_RS05580 at 1070.133 kb on + strand, within MMP_RS05580 at 1070.133 kb on + strand, within MMP_RS05580 at 1070.216 kb on + strand, within MMP_RS05580 at 1070.219 kb on - strand, within MMP_RS05580 at 1070.223 kb on + strand, within MMP_RS05580 at 1070.332 kb on - strand at 1070.333 kb on + strand at 1070.333 kb on + strand at 1070.335 kb on - strand at 1070.346 kb on - strand at 1070.347 kb on + strand at 1070.348 kb on - strand at 1070.348 kb on - strand at 1070.348 kb on - strand at 1070.359 kb on + strand at 1070.370 kb on - strand at 1070.373 kb on - strand at 1070.429 kb on - strand at 1070.438 kb on + strand at 1070.466 kb on - strand at 1070.470 kb on + strand at 1070.478 kb on - strand at 1070.479 kb on + strand at 1070.479 kb on + strand at 1070.548 kb on + strand at 1070.548 kb on + strand at 1070.561 kb on + strand at 1070.614 kb on - strand at 1070.629 kb on - strand at 1070.629 kb on - strand at 1070.632 kb on - strand at 1070.632 kb on - strand at 1070.633 kb on + strand at 1070.634 kb on - strand at 1070.634 kb on - strand at 1070.688 kb on - strand, within MMP_RS08890 at 1070.688 kb on - strand, within MMP_RS08890 at 1070.688 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.694 kb on - strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.695 kb on + strand, within MMP_RS08890 at 1070.698 kb on - strand, within MMP_RS08890 at 1070.699 kb on + strand, within MMP_RS08890 at 1070.699 kb on + strand, within MMP_RS08890 at 1070.699 kb on + strand, within MMP_RS08890 at 1070.699 kb on + strand, within MMP_RS08890 at 1070.734 kb on - strand, within MMP_RS08890 at 1070.740 kb on - strand, within MMP_RS08890 at 1070.741 kb on + strand, within MMP_RS08890 at 1070.741 kb on + strand, within MMP_RS08890 at 1070.741 kb on + strand, within MMP_RS08890 at 1070.899 kb on + strand, within MMP_RS08890 at 1070.941 kb on + strand, within MMP_RS08890 at 1070.991 kb on - strand, within MMP_RS08890 at 1070.992 kb on + strand, within MMP_RS08890 at 1070.995 kb on - strand, within MMP_RS08890 at 1071.056 kb on + strand, within MMP_RS08890 at 1071.183 kb on - strand, within MMP_RS08890 at 1071.187 kb on - strand, within MMP_RS08890 at 1071.187 kb on - strand, within MMP_RS08890 at 1071.187 kb on - strand, within MMP_RS08890 at 1071.188 kb on + strand, within MMP_RS08890 at 1071.188 kb on + strand, within MMP_RS08890 at 1071.189 kb on - strand, within MMP_RS08890 at 1071.189 kb on - strand, within MMP_RS08890 at 1071.207 kb on - strand, within MMP_RS08890 at 1071.208 kb on + strand, within MMP_RS08890 at 1071.231 kb on + strand, within MMP_RS08890 at 1071.231 kb on + strand, within MMP_RS08890 at 1071.239 kb on + strand, within MMP_RS08890 at 1071.244 kb on + strand, within MMP_RS08890 at 1071.244 kb on + strand, within MMP_RS08890 at 1071.244 kb on + strand, within MMP_RS08890 at 1071.301 kb on - strand, within MMP_RS08890
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 1,068,568 - -0.9 1,068,569 + +1.5 1,068,572 - +0.3 1,068,573 + +0.4 1,068,574 - -1.2 1,068,574 - -2.3 1,068,574 - +2.4 1,068,574 - +0.0 1,068,641 - -2.3 1,068,676 - +3.4 1,068,683 - +0.7 1,068,687 - -0.6 1,068,687 - +0.1 1,068,791 - MMP_RS05575 0.20 +1.7 1,068,827 - MMP_RS05575 0.24 -1.2 1,068,851 + MMP_RS05575 0.26 +1.1 1,069,044 - MMP_RS05575 0.47 -2.7 1,069,045 + MMP_RS05575 0.47 +1.7 1,069,071 + MMP_RS05575 0.50 +1.6 1,069,071 + MMP_RS05575 0.50 -2.9 1,069,076 + MMP_RS05575 0.50 +1.0 1,069,084 + MMP_RS05575 0.51 +1.5 1,069,088 - MMP_RS05575 0.51 -1.1 1,069,091 + MMP_RS05575 0.52 +2.5 1,069,091 + MMP_RS05575 0.52 -0.6 1,069,095 + MMP_RS05575 0.52 -1.8 1,069,105 - MMP_RS05575 0.53 -1.5 1,069,120 - MMP_RS05575 0.55 -2.0 1,069,261 + MMP_RS05575 0.70 -0.3 1,069,323 - MMP_RS05575 0.76 +1.0 1,069,324 + MMP_RS05575 0.76 +0.2 1,069,351 + MMP_RS05575 0.79 -1.3 1,069,352 - MMP_RS05575 0.79 +0.0 1,069,352 - MMP_RS05575 0.79 -0.6 1,069,355 - MMP_RS05575 0.80 -2.5 1,069,356 + MMP_RS05575 0.80 -0.3 1,069,415 + MMP_RS05575 0.86 -0.1 1,069,444 - MMP_RS05575 0.89 +0.6 1,069,450 - MMP_RS05575 0.90 -0.4 1,069,451 + MMP_RS05575 0.90 +0.3 1,069,468 - -1.5 1,069,469 + +0.3 1,069,469 + +1.3 1,069,473 - -0.7 1,069,474 + +1.1 1,069,474 + +1.1 1,069,478 - -0.2 1,069,479 + -2.4 1,069,496 - -0.0 1,069,496 - -2.0 1,069,496 - -0.7 1,069,500 - +1.1 1,069,501 + -2.9 1,069,501 + +0.9 1,069,546 + -2.6 1,069,550 - -1.8 1,069,550 - -0.0 1,069,592 - -0.6 1,069,666 - MMP_RS05580 0.14 -2.4 1,069,683 + MMP_RS05580 0.16 -2.4 1,069,704 + MMP_RS05580 0.19 -1.2 1,069,705 - MMP_RS05580 0.19 -1.4 1,069,713 - MMP_RS05580 0.20 -1.4 1,069,739 - MMP_RS05580 0.23 -2.5 1,069,742 + MMP_RS05580 0.24 +0.3 1,069,763 + MMP_RS05580 0.26 -0.3 1,069,780 + MMP_RS05580 0.28 -0.8 1,069,780 + MMP_RS05580 0.28 -0.4 1,069,780 + MMP_RS05580 0.28 -2.1 1,069,780 + MMP_RS05580 0.28 -0.5 1,069,781 - MMP_RS05580 0.28 -1.3 1,069,781 - MMP_RS05580 0.28 -2.1 1,069,782 + MMP_RS05580 0.29 -2.1 1,069,782 + MMP_RS05580 0.29 -0.8 1,069,782 + MMP_RS05580 0.29 -1.5 1,069,782 + MMP_RS05580 0.29 -2.3 1,069,784 - MMP_RS05580 0.29 -0.9 1,069,784 - MMP_RS05580 0.29 +1.0 1,069,784 - MMP_RS05580 0.29 -1.3 1,069,784 - MMP_RS05580 0.29 -1.3 1,069,785 + MMP_RS05580 0.29 -1.1 1,069,785 + MMP_RS05580 0.29 -1.7 1,069,785 + MMP_RS05580 0.29 +4.0 1,069,785 + MMP_RS05580 0.29 +1.8 1,069,785 + MMP_RS05580 0.29 +0.4 1,069,792 - MMP_RS05580 0.30 -0.4 1,069,793 + MMP_RS05580 0.30 -1.2 1,069,849 - MMP_RS05580 0.37 -1.1 1,069,865 + MMP_RS05580 0.39 +0.9 1,069,868 - MMP_RS05580 0.39 +0.6 1,069,868 - MMP_RS05580 0.39 -0.5 1,069,870 - MMP_RS05580 0.39 -0.7 1,069,882 + MMP_RS05580 0.41 -1.5 1,069,929 - MMP_RS05580 0.47 -0.7 1,069,982 - MMP_RS05580 0.53 -1.0 1,069,983 + MMP_RS05580 0.53 -2.4 1,069,989 + MMP_RS05580 0.54 -1.4 1,069,992 + MMP_RS05580 0.54 +0.5 1,070,079 - MMP_RS05580 0.65 -1.4 1,070,079 - MMP_RS05580 0.65 -0.3 1,070,080 + MMP_RS05580 0.65 -2.9 1,070,080 + MMP_RS05580 0.65 +0.1 1,070,112 + MMP_RS05580 0.69 -1.3 1,070,132 - MMP_RS05580 0.72 -1.3 1,070,133 + MMP_RS05580 0.72 -4.0 1,070,133 + MMP_RS05580 0.72 -3.0 1,070,216 + MMP_RS05580 0.82 -1.1 1,070,219 - MMP_RS05580 0.82 +0.9 1,070,223 + MMP_RS05580 0.83 -1.9 1,070,332 - +1.0 1,070,333 + -1.2 1,070,333 + -2.2 1,070,335 - -1.4 1,070,346 - -1.1 1,070,347 + +0.3 1,070,348 - -0.2 1,070,348 - -0.5 1,070,348 - +0.8 1,070,359 + -1.4 1,070,370 - -0.7 1,070,373 - +1.1 1,070,429 - -1.4 1,070,438 + -2.1 1,070,466 - -0.4 1,070,470 + -1.6 1,070,478 - +1.0 1,070,479 + -0.7 1,070,479 + -2.4 1,070,548 + -0.4 1,070,548 + +2.2 1,070,561 + -0.7 1,070,614 - -0.1 1,070,629 - +1.5 1,070,629 - +1.0 1,070,632 - +1.5 1,070,632 - +0.3 1,070,633 + +0.5 1,070,634 - +1.2 1,070,634 - +0.9 1,070,688 - MMP_RS08890 0.14 -0.9 1,070,688 - MMP_RS08890 0.14 +3.7 1,070,688 - MMP_RS08890 0.14 +2.1 1,070,694 - MMP_RS08890 0.15 +0.6 1,070,694 - MMP_RS08890 0.15 +0.7 1,070,694 - MMP_RS08890 0.15 -0.3 1,070,694 - MMP_RS08890 0.15 +1.1 1,070,694 - MMP_RS08890 0.15 -1.9 1,070,694 - MMP_RS08890 0.15 -0.1 1,070,694 - MMP_RS08890 0.15 +0.4 1,070,695 + MMP_RS08890 0.15 +2.8 1,070,695 + MMP_RS08890 0.15 +0.5 1,070,695 + MMP_RS08890 0.15 +2.0 1,070,695 + MMP_RS08890 0.15 +1.1 1,070,695 + MMP_RS08890 0.15 +0.2 1,070,695 + MMP_RS08890 0.15 -2.2 1,070,695 + MMP_RS08890 0.15 +1.2 1,070,698 - MMP_RS08890 0.15 +3.4 1,070,699 + MMP_RS08890 0.15 +0.3 1,070,699 + MMP_RS08890 0.15 +0.5 1,070,699 + MMP_RS08890 0.15 +2.7 1,070,699 + MMP_RS08890 0.15 -2.7 1,070,734 - MMP_RS08890 0.18 -0.1 1,070,740 - MMP_RS08890 0.19 -1.9 1,070,741 + MMP_RS08890 0.19 +0.6 1,070,741 + MMP_RS08890 0.19 +0.8 1,070,741 + MMP_RS08890 0.19 -0.9 1,070,899 + MMP_RS08890 0.33 +0.9 1,070,941 + MMP_RS08890 0.37 +1.4 1,070,991 - MMP_RS08890 0.42 +1.4 1,070,992 + MMP_RS08890 0.42 -0.8 1,070,995 - MMP_RS08890 0.42 -3.5 1,071,056 + MMP_RS08890 0.48 +2.4 1,071,183 - MMP_RS08890 0.59 -1.0 1,071,187 - MMP_RS08890 0.60 +1.6 1,071,187 - MMP_RS08890 0.60 -1.2 1,071,187 - MMP_RS08890 0.60 +0.1 1,071,188 + MMP_RS08890 0.60 +2.7 1,071,188 + MMP_RS08890 0.60 +0.4 1,071,189 - MMP_RS08890 0.60 -1.7 1,071,189 - MMP_RS08890 0.60 -1.0 1,071,207 - MMP_RS08890 0.61 -0.8 1,071,208 + MMP_RS08890 0.62 -1.6 1,071,231 + MMP_RS08890 0.64 +0.1 1,071,231 + MMP_RS08890 0.64 +0.5 1,071,239 + MMP_RS08890 0.64 -1.6 1,071,244 + MMP_RS08890 0.65 +0.5 1,071,244 + MMP_RS08890 0.65 +1.6 1,071,244 + MMP_RS08890 0.65 -0.5 1,071,301 - MMP_RS08890 0.70 +0.3
Or see this region's nucleotide sequence