Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05580

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas_formate_complete nitrate 35.7142857142857 mM
1,068,568	-				-0.9
1,068,569	+				+1.5
1,068,572	-				+0.3
1,068,573	+				+0.4
1,068,574	-				-1.2
1,068,574	-				-2.3
1,068,574	-				+2.4
1,068,574	-				+0.0
1,068,641	-				-2.3
1,068,676	-				+3.4
1,068,683	-				+0.7
1,068,687	-				-0.6
1,068,687	-				+0.1
1,068,791	-		MMP_RS05575	0.20	+1.7
1,068,827	-		MMP_RS05575	0.24	-1.2
1,068,851	+		MMP_RS05575	0.26	+1.1
1,069,044	-		MMP_RS05575	0.47	-2.7
1,069,045	+		MMP_RS05575	0.47	+1.7
1,069,071	+		MMP_RS05575	0.50	+1.6
1,069,071	+		MMP_RS05575	0.50	-2.9
1,069,076	+		MMP_RS05575	0.50	+1.0
1,069,084	+		MMP_RS05575	0.51	+1.5
1,069,088	-		MMP_RS05575	0.51	-1.1
1,069,091	+		MMP_RS05575	0.52	+2.5
1,069,091	+		MMP_RS05575	0.52	-0.6
1,069,095	+		MMP_RS05575	0.52	-1.8
1,069,105	-		MMP_RS05575	0.53	-1.5
1,069,120	-		MMP_RS05575	0.55	-2.0
1,069,261	+		MMP_RS05575	0.70	-0.3
1,069,323	-		MMP_RS05575	0.76	+1.0
1,069,324	+		MMP_RS05575	0.76	+0.2
1,069,351	+		MMP_RS05575	0.79	-1.3
1,069,352	-		MMP_RS05575	0.79	+0.0
1,069,352	-		MMP_RS05575	0.79	-0.6
1,069,355	-		MMP_RS05575	0.80	-2.5
1,069,356	+		MMP_RS05575	0.80	-0.3
1,069,415	+		MMP_RS05575	0.86	-0.1
1,069,444	-		MMP_RS05575	0.89	+0.6
1,069,450	-		MMP_RS05575	0.90	-0.4
1,069,451	+		MMP_RS05575	0.90	+0.3
1,069,468	-				-1.5
1,069,469	+				+0.3
1,069,469	+				+1.3
1,069,473	-				-0.7
1,069,474	+				+1.1
1,069,474	+				+1.1
1,069,478	-				-0.2
1,069,479	+				-2.4
1,069,496	-				-0.0
1,069,496	-				-2.0
1,069,496	-				-0.7
1,069,500	-				+1.1
1,069,501	+				-2.9
1,069,501	+				+0.9
1,069,546	+				-2.6
1,069,550	-				-1.8
1,069,550	-				-0.0
1,069,592	-				-0.6
1,069,666	-		MMP_RS05580	0.14	-2.4
1,069,683	+		MMP_RS05580	0.16	-2.4
1,069,704	+		MMP_RS05580	0.19	-1.2
1,069,705	-		MMP_RS05580	0.19	-1.4
1,069,713	-		MMP_RS05580	0.20	-1.4
1,069,739	-		MMP_RS05580	0.23	-2.5
1,069,742	+		MMP_RS05580	0.24	+0.3
1,069,763	+		MMP_RS05580	0.26	-0.3
1,069,780	+		MMP_RS05580	0.28	-0.8
1,069,780	+		MMP_RS05580	0.28	-0.4
1,069,780	+		MMP_RS05580	0.28	-2.1
1,069,780	+		MMP_RS05580	0.28	-0.5
1,069,781	-		MMP_RS05580	0.28	-1.3
1,069,781	-		MMP_RS05580	0.28	-2.1
1,069,782	+		MMP_RS05580	0.29	-2.1
1,069,782	+		MMP_RS05580	0.29	-0.8
1,069,782	+		MMP_RS05580	0.29	-1.5
1,069,782	+		MMP_RS05580	0.29	-2.3
1,069,784	-		MMP_RS05580	0.29	-0.9
1,069,784	-		MMP_RS05580	0.29	+1.0
1,069,784	-		MMP_RS05580	0.29	-1.3
1,069,784	-		MMP_RS05580	0.29	-1.3
1,069,785	+		MMP_RS05580	0.29	-1.1
1,069,785	+		MMP_RS05580	0.29	-1.7
1,069,785	+		MMP_RS05580	0.29	+4.0
1,069,785	+		MMP_RS05580	0.29	+1.8
1,069,785	+		MMP_RS05580	0.29	+0.4
1,069,792	-		MMP_RS05580	0.30	-0.4
1,069,793	+		MMP_RS05580	0.30	-1.2
1,069,849	-		MMP_RS05580	0.37	-1.1
1,069,865	+		MMP_RS05580	0.39	+0.9
1,069,868	-		MMP_RS05580	0.39	+0.6
1,069,868	-		MMP_RS05580	0.39	-0.5
1,069,870	-		MMP_RS05580	0.39	-0.7
1,069,882	+		MMP_RS05580	0.41	-1.5
1,069,929	-		MMP_RS05580	0.47	-0.7
1,069,982	-		MMP_RS05580	0.53	-1.0
1,069,983	+		MMP_RS05580	0.53	-2.4
1,069,989	+		MMP_RS05580	0.54	-1.4
1,069,992	+		MMP_RS05580	0.54	+0.5
1,070,079	-		MMP_RS05580	0.65	-1.4
1,070,079	-		MMP_RS05580	0.65	-0.3
1,070,080	+		MMP_RS05580	0.65	-2.9
1,070,080	+		MMP_RS05580	0.65	+0.1
1,070,112	+		MMP_RS05580	0.69	-1.3
1,070,132	-		MMP_RS05580	0.72	-1.3
1,070,133	+		MMP_RS05580	0.72	-4.0
1,070,133	+		MMP_RS05580	0.72	-3.0
1,070,216	+		MMP_RS05580	0.82	-1.1
1,070,219	-		MMP_RS05580	0.82	+0.9
1,070,223	+		MMP_RS05580	0.83	-1.9
1,070,332	-				+1.0
1,070,333	+				-1.2
1,070,333	+				-2.2
1,070,335	-				-1.4
1,070,346	-				-1.1
1,070,347	+				+0.3
1,070,348	-				-0.2
1,070,348	-				-0.5
1,070,348	-				+0.8
1,070,359	+				-1.4
1,070,370	-				-0.7
1,070,373	-				+1.1
1,070,429	-				-1.4
1,070,438	+				-2.1
1,070,466	-				-0.4
1,070,470	+				-1.6
1,070,478	-				+1.0
1,070,479	+				-0.7
1,070,479	+				-2.4
1,070,548	+				-0.4
1,070,548	+				+2.2
1,070,561	+				-0.7
1,070,614	-				-0.1
1,070,629	-				+1.5
1,070,629	-				+1.0
1,070,632	-				+1.5
1,070,632	-				+0.3
1,070,633	+				+0.5
1,070,634	-				+1.2
1,070,634	-				+0.9
1,070,688	-		MMP_RS08890	0.14	-0.9
1,070,688	-		MMP_RS08890	0.14	+3.7
1,070,688	-		MMP_RS08890	0.14	+2.1
1,070,694	-		MMP_RS08890	0.15	+0.6
1,070,694	-		MMP_RS08890	0.15	+0.7
1,070,694	-		MMP_RS08890	0.15	-0.3
1,070,694	-		MMP_RS08890	0.15	+1.1
1,070,694	-		MMP_RS08890	0.15	-1.9
1,070,694	-		MMP_RS08890	0.15	-0.1
1,070,694	-		MMP_RS08890	0.15	+0.4
1,070,695	+		MMP_RS08890	0.15	+2.8
1,070,695	+		MMP_RS08890	0.15	+0.5
1,070,695	+		MMP_RS08890	0.15	+2.0
1,070,695	+		MMP_RS08890	0.15	+1.1
1,070,695	+		MMP_RS08890	0.15	+0.2
1,070,695	+		MMP_RS08890	0.15	-2.2
1,070,695	+		MMP_RS08890	0.15	+1.2
1,070,698	-		MMP_RS08890	0.15	+3.4
1,070,699	+		MMP_RS08890	0.15	+0.3
1,070,699	+		MMP_RS08890	0.15	+0.5
1,070,699	+		MMP_RS08890	0.15	+2.7
1,070,699	+		MMP_RS08890	0.15	-2.7
1,070,734	-		MMP_RS08890	0.18	-0.1
1,070,740	-		MMP_RS08890	0.19	-1.9
1,070,741	+		MMP_RS08890	0.19	+0.6
1,070,741	+		MMP_RS08890	0.19	+0.8
1,070,741	+		MMP_RS08890	0.19	-0.9
1,070,899	+		MMP_RS08890	0.33	+0.9
1,070,941	+		MMP_RS08890	0.37	+1.4
1,070,991	-		MMP_RS08890	0.42	+1.4
1,070,992	+		MMP_RS08890	0.42	-0.8
1,070,995	-		MMP_RS08890	0.42	-3.5
1,071,056	+		MMP_RS08890	0.48	+2.4
1,071,183	-		MMP_RS08890	0.59	-1.0
1,071,187	-		MMP_RS08890	0.60	+1.6
1,071,187	-		MMP_RS08890	0.60	-1.2
1,071,187	-		MMP_RS08890	0.60	+0.1
1,071,188	+		MMP_RS08890	0.60	+2.7
1,071,188	+		MMP_RS08890	0.60	+0.4
1,071,189	-		MMP_RS08890	0.60	-1.7
1,071,189	-		MMP_RS08890	0.60	-1.0
1,071,207	-		MMP_RS08890	0.61	-0.8
1,071,208	+		MMP_RS08890	0.62	-1.6
1,071,231	+		MMP_RS08890	0.64	+0.1
1,071,231	+		MMP_RS08890	0.64	+0.5
1,071,239	+		MMP_RS08890	0.64	-1.6
1,071,244	+		MMP_RS08890	0.65	+0.5
1,071,244	+		MMP_RS08890	0.65	+1.6
1,071,244	+		MMP_RS08890	0.65	-0.5
1,071,301	-		MMP_RS08890	0.70	+0.3