Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05510

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05500 and MMP_RS05505 are separated by 129 nucleotidesMMP_RS05505 and MMP_RS05510 overlap by 4 nucleotidesMMP_RS05510 and MMP_RS05515 are separated by 109 nucleotidesMMP_RS05515 and MMP_RS05520 are separated by 18 nucleotides MMP_RS05500: MMP_RS05500 - 2-isopropylmalate synthase, at 1,055,566 to 1,057,110 _RS05500 MMP_RS05505: MMP_RS05505 - class IV adenylate cyclase, at 1,057,240 to 1,057,803 _RS05505 MMP_RS05510: MMP_RS05510 - Rrf2 family transcriptional regulator, at 1,057,800 to 1,058,234 _RS05510 MMP_RS05515: MMP_RS05515 - cyclic pyranopterin monophosphate synthase MoaC, at 1,058,344 to 1,058,805 _RS05515 MMP_RS05520: MMP_RS05520 - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,058,824 to 1,060,308 _RS05520 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1056.852 kb on - strand, within MMP_RS05500at 1057.196 kb on - strandat 1057.203 kb on - strandat 1057.203 kb on - strandat 1057.224 kb on - strandat 1057.241 kb on - strandat 1057.336 kb on - strand, within MMP_RS05505at 1057.509 kb on + strand, within MMP_RS05505at 1057.590 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.595 kb on - strand, within MMP_RS05505at 1057.596 kb on + strand, within MMP_RS05505at 1057.596 kb on + strand, within MMP_RS05505at 1057.675 kb on - strand, within MMP_RS05505at 1057.676 kb on + strand, within MMP_RS05505at 1057.689 kb on + strand, within MMP_RS05505at 1057.787 kb on + strandat 1058.125 kb on - strand, within MMP_RS05510at 1058.125 kb on - strand, within MMP_RS05510at 1058.126 kb on + strand, within MMP_RS05510at 1058.126 kb on + strand, within MMP_RS05510at 1058.129 kb on - strand, within MMP_RS05510at 1058.130 kb on + strand, within MMP_RS05510at 1058.193 kb on + strandat 1058.202 kb on + strandat 1058.264 kb on - strandat 1058.282 kb on - strandat 1058.286 kb on - strandat 1058.286 kb on - strandat 1058.310 kb on - strandat 1058.314 kb on - strandat 1058.314 kb on - strandat 1058.319 kb on - strandat 1058.349 kb on - strandat 1058.434 kb on + strand, within MMP_RS05515at 1058.482 kb on + strand, within MMP_RS05515at 1058.533 kb on + strand, within MMP_RS05515at 1058.619 kb on + strand, within MMP_RS05515at 1058.648 kb on + strand, within MMP_RS05515at 1058.648 kb on + strand, within MMP_RS05515at 1058.718 kb on + strand, within MMP_RS05515at 1058.973 kb on + strandat 1058.998 kb on - strandat 1059.177 kb on - strandat 1059.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,056,852 - MMP_RS05500 0.83 -0.5
1,057,196 - -2.3
1,057,203 - +2.2
1,057,203 - +0.6
1,057,224 - +0.5
1,057,241 - +0.6
1,057,336 - MMP_RS05505 0.17 +0.6
1,057,509 + MMP_RS05505 0.48 +1.8
1,057,590 - MMP_RS05505 0.62 -0.7
1,057,595 - MMP_RS05505 0.63 -0.0
1,057,595 - MMP_RS05505 0.63 +0.1
1,057,595 - MMP_RS05505 0.63 -1.0
1,057,595 - MMP_RS05505 0.63 +1.3
1,057,596 + MMP_RS05505 0.63 +0.9
1,057,596 + MMP_RS05505 0.63 -1.1
1,057,675 - MMP_RS05505 0.77 +0.3
1,057,676 + MMP_RS05505 0.77 +0.3
1,057,689 + MMP_RS05505 0.80 -0.2
1,057,787 + -1.5
1,058,125 - MMP_RS05510 0.75 -1.5
1,058,125 - MMP_RS05510 0.75 +0.1
1,058,126 + MMP_RS05510 0.75 -0.1
1,058,126 + MMP_RS05510 0.75 -0.9
1,058,129 - MMP_RS05510 0.76 -1.1
1,058,130 + MMP_RS05510 0.76 -0.4
1,058,193 + -1.2
1,058,202 + -0.3
1,058,264 - -0.1
1,058,282 - +2.3
1,058,286 - +2.0
1,058,286 - +0.6
1,058,310 - +0.7
1,058,314 - +0.6
1,058,314 - +2.0
1,058,319 - +3.2
1,058,349 - +4.1
1,058,434 + MMP_RS05515 0.19 +1.9
1,058,482 + MMP_RS05515 0.30 +2.4
1,058,533 + MMP_RS05515 0.41 +1.4
1,058,619 + MMP_RS05515 0.60 +2.9
1,058,648 + MMP_RS05515 0.66 -0.4
1,058,648 + MMP_RS05515 0.66 +2.3
1,058,718 + MMP_RS05515 0.81 -2.4
1,058,973 + +0.4
1,058,998 - +3.1
1,059,177 - +1.9
1,059,192 + +0.1

Or see this region's nucleotide sequence