Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05430

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05415 and MMP_RS05420 are separated by 56 nucleotidesMMP_RS05420 and MMP_RS09020 are separated by 7 nucleotidesMMP_RS09020 and MMP_RS05425 are separated by 13 nucleotidesMMP_RS05425 and MMP_RS05430 are separated by 35 nucleotidesMMP_RS05430 and MMP_RS05435 are separated by 76 nucleotides MMP_RS05415: MMP_RS05415 - DUF22 domain-containing protein, at 1,040,625 to 1,040,990 _RS05415 MMP_RS05420: MMP_RS05420 - DUF61 family protein, at 1,041,047 to 1,041,436 _RS05420 MMP_RS09020: MMP_RS09020 - hypothetical protein, at 1,041,444 to 1,041,620 _RS09020 MMP_RS05425: MMP_RS05425 - monovalent cation/H+ antiporter complex subunit F, at 1,041,634 to 1,041,903 _RS05425 MMP_RS05430: MMP_RS05430 - TIGR00288 family NYN domain-containing protein, at 1,041,939 to 1,042,586 _RS05430 MMP_RS05435: MMP_RS05435 - 5'/3'-nucleotidase SurE, at 1,042,663 to 1,043,457 _RS05435 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 1040.939 kb on - strand, within MMP_RS05415at 1040.940 kb on + strand, within MMP_RS05415at 1040.971 kb on - strandat 1040.971 kb on - strandat 1040.988 kb on - strandat 1040.992 kb on - strandat 1040.992 kb on - strandat 1040.993 kb on + strandat 1041.062 kb on - strandat 1041.065 kb on + strandat 1041.169 kb on - strand, within MMP_RS05420at 1041.216 kb on - strand, within MMP_RS05420at 1041.231 kb on - strand, within MMP_RS05420at 1041.232 kb on + strand, within MMP_RS05420at 1041.234 kb on - strand, within MMP_RS05420at 1041.292 kb on + strand, within MMP_RS05420at 1041.431 kb on + strandat 1041.431 kb on + strandat 1041.538 kb on - strand, within MMP_RS09020at 1041.542 kb on + strand, within MMP_RS09020at 1041.569 kb on - strand, within MMP_RS09020at 1041.623 kb on - strandat 1041.644 kb on + strandat 1041.647 kb on - strandat 1041.647 kb on - strandat 1041.648 kb on + strandat 1041.653 kb on + strandat 1041.653 kb on + strandat 1041.728 kb on - strand, within MMP_RS05425at 1041.728 kb on - strand, within MMP_RS05425at 1041.728 kb on - strand, within MMP_RS05425at 1041.728 kb on - strand, within MMP_RS05425at 1041.728 kb on - strand, within MMP_RS05425at 1041.729 kb on + strand, within MMP_RS05425at 1041.810 kb on + strand, within MMP_RS05425at 1041.833 kb on - strand, within MMP_RS05425at 1041.834 kb on + strand, within MMP_RS05425at 1041.834 kb on + strand, within MMP_RS05425at 1041.916 kb on + strandat 1041.920 kb on + strandat 1041.981 kb on + strandat 1042.004 kb on - strand, within MMP_RS05430at 1042.004 kb on - strand, within MMP_RS05430at 1042.076 kb on - strand, within MMP_RS05430at 1042.169 kb on - strand, within MMP_RS05430at 1042.170 kb on + strand, within MMP_RS05430at 1042.196 kb on - strand, within MMP_RS05430at 1042.271 kb on - strand, within MMP_RS05430at 1042.475 kb on - strand, within MMP_RS05430at 1042.508 kb on - strand, within MMP_RS05430at 1042.513 kb on + strand, within MMP_RS05430at 1042.513 kb on + strand, within MMP_RS05430at 1042.603 kb on - strandat 1042.631 kb on + strandat 1042.639 kb on - strandat 1042.640 kb on + strandat 1042.726 kb on + strandat 1042.768 kb on - strand, within MMP_RS05435at 1042.768 kb on - strand, within MMP_RS05435at 1042.769 kb on + strand, within MMP_RS05435at 1042.820 kb on - strand, within MMP_RS05435at 1042.940 kb on + strand, within MMP_RS05435at 1043.165 kb on + strand, within MMP_RS05435at 1043.209 kb on - strand, within MMP_RS05435at 1043.233 kb on + strand, within MMP_RS05435at 1043.311 kb on - strand, within MMP_RS05435at 1043.325 kb on - strand, within MMP_RS05435at 1043.383 kb on - strandat 1043.383 kb on - strandat 1043.384 kb on + strandat 1043.480 kb on + strandat 1043.502 kb on + strandat 1043.502 kb on + strandat 1043.503 kb on - strandat 1043.504 kb on + strandat 1043.504 kb on + strandat 1043.504 kb on + strandat 1043.508 kb on - strandat 1043.512 kb on - strandat 1043.539 kb on + strandat 1043.554 kb on + strandat 1043.558 kb on - strandat 1043.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,040,939 - MMP_RS05415 0.86 +0.9
1,040,940 + MMP_RS05415 0.86 -0.1
1,040,971 - -2.4
1,040,971 - +0.5
1,040,988 - +0.6
1,040,992 - +1.9
1,040,992 - -1.6
1,040,993 + -2.4
1,041,062 - +0.2
1,041,065 + -3.4
1,041,169 - MMP_RS05420 0.31 -2.4
1,041,216 - MMP_RS05420 0.43 -0.4
1,041,231 - MMP_RS05420 0.47 +1.7
1,041,232 + MMP_RS05420 0.47 -1.1
1,041,234 - MMP_RS05420 0.48 +1.1
1,041,292 + MMP_RS05420 0.63 -1.6
1,041,431 + +0.5
1,041,431 + -1.5
1,041,538 - MMP_RS09020 0.53 +1.8
1,041,542 + MMP_RS09020 0.55 -0.3
1,041,569 - MMP_RS09020 0.71 -1.0
1,041,623 - +3.2
1,041,644 + +3.8
1,041,647 - +5.8
1,041,647 - +5.2
1,041,648 + -2.0
1,041,653 + +0.7
1,041,653 + -1.9
1,041,728 - MMP_RS05425 0.35 +7.7
1,041,728 - MMP_RS05425 0.35 +4.8
1,041,728 - MMP_RS05425 0.35 +5.3
1,041,728 - MMP_RS05425 0.35 +2.1
1,041,728 - MMP_RS05425 0.35 +5.8
1,041,729 + MMP_RS05425 0.35 +6.3
1,041,810 + MMP_RS05425 0.65 +0.2
1,041,833 - MMP_RS05425 0.74 +5.9
1,041,834 + MMP_RS05425 0.74 -1.3
1,041,834 + MMP_RS05425 0.74 -0.7
1,041,916 + +1.4
1,041,920 + -2.1
1,041,981 + -0.2
1,042,004 - MMP_RS05430 0.10 -2.4
1,042,004 - MMP_RS05430 0.10 +0.0
1,042,076 - MMP_RS05430 0.21 -0.0
1,042,169 - MMP_RS05430 0.35 -0.9
1,042,170 + MMP_RS05430 0.36 -2.2
1,042,196 - MMP_RS05430 0.40 -4.1
1,042,271 - MMP_RS05430 0.51 -3.1
1,042,475 - MMP_RS05430 0.83 -1.8
1,042,508 - MMP_RS05430 0.88 -2.3
1,042,513 + MMP_RS05430 0.89 -2.4
1,042,513 + MMP_RS05430 0.89 -1.4
1,042,603 - -2.4
1,042,631 + -2.1
1,042,639 - -2.9
1,042,640 + -3.1
1,042,726 + +1.3
1,042,768 - MMP_RS05435 0.13 +0.4
1,042,768 - MMP_RS05435 0.13 +0.4
1,042,769 + MMP_RS05435 0.13 -1.9
1,042,820 - MMP_RS05435 0.20 -0.9
1,042,940 + MMP_RS05435 0.35 -0.4
1,043,165 + MMP_RS05435 0.63 -0.1
1,043,209 - MMP_RS05435 0.69 -1.1
1,043,233 + MMP_RS05435 0.72 -0.7
1,043,311 - MMP_RS05435 0.82 -0.5
1,043,325 - MMP_RS05435 0.83 -0.9
1,043,383 - -0.2
1,043,383 - -0.0
1,043,384 + +2.4
1,043,480 + -1.8
1,043,502 + -0.7
1,043,502 + +2.3
1,043,503 - -0.9
1,043,504 + -1.6
1,043,504 + -1.1
1,043,504 + -0.8
1,043,508 - +0.6
1,043,512 - +0.5
1,043,539 + -1.5
1,043,554 + +0.9
1,043,558 - -2.4
1,043,581 + +2.0

Or see this region's nucleotide sequence