Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05355

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05345 and MMP_RS05350 are separated by 21 nucleotidesMMP_RS05350 and MMP_RS05355 are separated by 71 nucleotidesMMP_RS05355 and MMP_RS05360 are separated by 37 nucleotidesMMP_RS05360 and MMP_RS05365 are separated by 81 nucleotides MMP_RS05345: MMP_RS05345 - hypothetical protein, at 1,025,552 to 1,028,482 _RS05345 MMP_RS05350: MMP_RS05350 - dTMP kinase, at 1,028,504 to 1,029,103 _RS05350 MMP_RS05355: MMP_RS05355 - hypothetical protein, at 1,029,175 to 1,029,588 _RS05355 MMP_RS05360: MMP_RS05360 - hypothetical protein, at 1,029,626 to 1,030,432 _RS05360 MMP_RS05365: MMP_RS05365 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,030,514 to 1,030,993 _RS05365 Position (kb) 1029 1030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1028.176 kb on + strand, within MMP_RS05345at 1028.330 kb on + strandat 1029.092 kb on + strandat 1029.096 kb on - strandat 1029.106 kb on - strandat 1029.107 kb on + strandat 1029.110 kb on - strandat 1029.110 kb on - strandat 1029.111 kb on + strandat 1029.111 kb on + strandat 1029.120 kb on + strandat 1029.127 kb on + strandat 1029.131 kb on - strandat 1029.143 kb on - strandat 1029.144 kb on + strandat 1029.144 kb on + strandat 1029.148 kb on + strandat 1029.148 kb on + strandat 1029.182 kb on - strandat 1029.183 kb on + strandat 1029.543 kb on + strand, within MMP_RS05355at 1029.564 kb on + strandat 1029.564 kb on + strandat 1029.578 kb on - strandat 1029.625 kb on - strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.626 kb on + strandat 1029.649 kb on + strandat 1029.652 kb on + strandat 1029.655 kb on - strandat 1029.719 kb on + strand, within MMP_RS05360at 1029.720 kb on - strand, within MMP_RS05360at 1029.740 kb on + strand, within MMP_RS05360at 1029.763 kb on - strand, within MMP_RS05360at 1029.807 kb on - strand, within MMP_RS05360at 1030.027 kb on - strand, within MMP_RS05360at 1030.362 kb on - strandat 1030.363 kb on + strandat 1030.363 kb on + strandat 1030.396 kb on - strandat 1030.399 kb on + strandat 1030.514 kb on + strandat 1030.521 kb on - strandat 1030.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,028,176 + MMP_RS05345 0.90 +0.8
1,028,330 + -2.9
1,029,092 + -1.9
1,029,096 - -2.2
1,029,106 - -0.6
1,029,107 + -1.5
1,029,110 - +1.7
1,029,110 - +0.7
1,029,111 + +2.0
1,029,111 + +1.8
1,029,120 + -0.6
1,029,127 + +0.7
1,029,131 - -0.3
1,029,143 - -0.5
1,029,144 + -1.0
1,029,144 + +1.2
1,029,148 + +1.1
1,029,148 + +0.9
1,029,182 - +0.9
1,029,183 + -1.0
1,029,543 + MMP_RS05355 0.89 -1.5
1,029,564 + +0.8
1,029,564 + -0.1
1,029,578 - -1.8
1,029,625 - -1.5
1,029,626 + -0.9
1,029,626 + -0.6
1,029,626 + -1.3
1,029,649 + +0.4
1,029,652 + -0.3
1,029,655 - +0.5
1,029,719 + MMP_RS05360 0.12 -1.2
1,029,720 - MMP_RS05360 0.12 -2.8
1,029,740 + MMP_RS05360 0.14 -2.4
1,029,763 - MMP_RS05360 0.17 +0.2
1,029,807 - MMP_RS05360 0.22 +0.6
1,030,027 - MMP_RS05360 0.50 -0.9
1,030,362 - -0.9
1,030,363 + -1.3
1,030,363 + -1.3
1,030,396 - +0.4
1,030,399 + +1.4
1,030,514 + +1.1
1,030,521 - +2.9
1,030,522 + +1.0

Or see this region's nucleotide sequence