Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05270

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05265 and MMP_RS05270 are separated by 67 nucleotidesMMP_RS05270 and MMP_RS05275 are separated by 5 nucleotides MMP_RS05265: MMP_RS05265 - 2-isopropylmalate synthase, at 1,005,952 to 1,007,430 _RS05265 MMP_RS05270: MMP_RS05270 - PEGA domain-containing protein, at 1,007,498 to 1,008,295 _RS05270 MMP_RS05275: MMP_RS05275 - AI-2E family transporter, at 1,008,301 to 1,009,266 _RS05275 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1006.673 kb on + strand, within MMP_RS05265at 1006.735 kb on - strand, within MMP_RS05265at 1007.221 kb on + strand, within MMP_RS05265at 1007.478 kb on - strandat 1007.479 kb on + strandat 1007.479 kb on + strandat 1007.479 kb on + strandat 1007.479 kb on + strandat 1007.479 kb on + strandat 1007.480 kb on - strandat 1007.480 kb on - strandat 1007.480 kb on - strandat 1007.481 kb on + strandat 1007.481 kb on + strandat 1007.493 kb on - strandat 1007.533 kb on - strandat 1007.533 kb on - strandat 1007.533 kb on - strandat 1007.667 kb on + strand, within MMP_RS05270at 1007.668 kb on - strand, within MMP_RS05270at 1007.668 kb on - strand, within MMP_RS05270at 1007.669 kb on + strand, within MMP_RS05270at 1007.671 kb on - strand, within MMP_RS05270at 1007.702 kb on + strand, within MMP_RS05270at 1007.705 kb on + strand, within MMP_RS05270at 1007.706 kb on - strand, within MMP_RS05270at 1007.757 kb on - strand, within MMP_RS05270at 1007.896 kb on - strand, within MMP_RS05270at 1007.897 kb on + strand, within MMP_RS05270at 1007.901 kb on + strand, within MMP_RS05270at 1007.905 kb on + strand, within MMP_RS05270at 1007.907 kb on - strand, within MMP_RS05270at 1007.928 kb on + strand, within MMP_RS05270at 1007.932 kb on - strand, within MMP_RS05270at 1007.933 kb on + strand, within MMP_RS05270at 1007.934 kb on - strand, within MMP_RS05270at 1007.961 kb on - strand, within MMP_RS05270at 1007.961 kb on - strand, within MMP_RS05270at 1007.961 kb on - strand, within MMP_RS05270at 1007.962 kb on + strand, within MMP_RS05270at 1007.962 kb on + strand, within MMP_RS05270at 1007.963 kb on - strand, within MMP_RS05270at 1007.963 kb on - strand, within MMP_RS05270at 1007.963 kb on - strand, within MMP_RS05270at 1007.964 kb on + strand, within MMP_RS05270at 1007.979 kb on + strand, within MMP_RS05270at 1008.079 kb on + strand, within MMP_RS05270at 1008.096 kb on + strand, within MMP_RS05270at 1008.148 kb on - strand, within MMP_RS05270at 1008.150 kb on - strand, within MMP_RS05270at 1008.155 kb on + strand, within MMP_RS05270at 1008.167 kb on + strand, within MMP_RS05270at 1008.217 kb on - strandat 1008.259 kb on + strandat 1008.302 kb on - strandat 1008.347 kb on - strandat 1008.560 kb on - strand, within MMP_RS05275at 1008.561 kb on + strand, within MMP_RS05275at 1008.565 kb on - strand, within MMP_RS05275at 1008.565 kb on - strand, within MMP_RS05275at 1008.565 kb on - strand, within MMP_RS05275at 1008.581 kb on - strand, within MMP_RS05275at 1008.582 kb on + strand, within MMP_RS05275at 1008.582 kb on + strand, within MMP_RS05275at 1008.582 kb on + strand, within MMP_RS05275at 1008.620 kb on + strand, within MMP_RS05275at 1008.642 kb on - strand, within MMP_RS05275at 1008.771 kb on - strand, within MMP_RS05275at 1008.797 kb on - strand, within MMP_RS05275at 1008.810 kb on - strand, within MMP_RS05275at 1008.979 kb on - strand, within MMP_RS05275at 1009.029 kb on - strand, within MMP_RS05275at 1009.052 kb on + strand, within MMP_RS05275at 1009.060 kb on - strand, within MMP_RS05275at 1009.093 kb on - strand, within MMP_RS05275at 1009.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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1,006,673 + MMP_RS05265 0.49 -0.3
1,006,735 - MMP_RS05265 0.53 +2.3
1,007,221 + MMP_RS05265 0.86 -0.7
1,007,478 - -1.7
1,007,479 + -1.3
1,007,479 + -0.9
1,007,479 + +0.7
1,007,479 + +0.8
1,007,479 + -1.8
1,007,480 - +1.1
1,007,480 - -1.3
1,007,480 - +0.2
1,007,481 + -0.1
1,007,481 + -1.2
1,007,493 - +0.4
1,007,533 - -1.1
1,007,533 - -0.3
1,007,533 - -1.7
1,007,667 + MMP_RS05270 0.21 -2.2
1,007,668 - MMP_RS05270 0.21 -0.5
1,007,668 - MMP_RS05270 0.21 -0.0
1,007,669 + MMP_RS05270 0.21 -0.9
1,007,671 - MMP_RS05270 0.22 -1.3
1,007,702 + MMP_RS05270 0.26 -0.6
1,007,705 + MMP_RS05270 0.26 -0.8
1,007,706 - MMP_RS05270 0.26 -1.7
1,007,757 - MMP_RS05270 0.32 -0.3
1,007,896 - MMP_RS05270 0.50 +0.7
1,007,897 + MMP_RS05270 0.50 -0.3
1,007,901 + MMP_RS05270 0.51 +1.4
1,007,905 + MMP_RS05270 0.51 -0.4
1,007,907 - MMP_RS05270 0.51 -3.5
1,007,928 + MMP_RS05270 0.54 -1.2
1,007,932 - MMP_RS05270 0.54 -0.8
1,007,933 + MMP_RS05270 0.55 +1.1
1,007,934 - MMP_RS05270 0.55 +0.4
1,007,961 - MMP_RS05270 0.58 -0.8
1,007,961 - MMP_RS05270 0.58 -1.1
1,007,961 - MMP_RS05270 0.58 -2.4
1,007,962 + MMP_RS05270 0.58 +0.2
1,007,962 + MMP_RS05270 0.58 -2.1
1,007,963 - MMP_RS05270 0.58 -0.8
1,007,963 - MMP_RS05270 0.58 -0.4
1,007,963 - MMP_RS05270 0.58 -1.1
1,007,964 + MMP_RS05270 0.58 -0.8
1,007,979 + MMP_RS05270 0.60 -0.6
1,008,079 + MMP_RS05270 0.73 -0.7
1,008,096 + MMP_RS05270 0.75 -0.8
1,008,148 - MMP_RS05270 0.81 +0.2
1,008,150 - MMP_RS05270 0.82 -0.2
1,008,155 + MMP_RS05270 0.82 -0.7
1,008,167 + MMP_RS05270 0.84 +0.6
1,008,217 - -1.5
1,008,259 + -1.3
1,008,302 - -3.7
1,008,347 - +1.0
1,008,560 - MMP_RS05275 0.27 +1.6
1,008,561 + MMP_RS05275 0.27 -0.8
1,008,565 - MMP_RS05275 0.27 -0.4
1,008,565 - MMP_RS05275 0.27 +0.4
1,008,565 - MMP_RS05275 0.27 -1.3
1,008,581 - MMP_RS05275 0.29 -0.7
1,008,582 + MMP_RS05275 0.29 -0.4
1,008,582 + MMP_RS05275 0.29 -0.9
1,008,582 + MMP_RS05275 0.29 -2.2
1,008,620 + MMP_RS05275 0.33 -0.7
1,008,642 - MMP_RS05275 0.35 +0.4
1,008,771 - MMP_RS05275 0.49 +0.1
1,008,797 - MMP_RS05275 0.51 +0.6
1,008,810 - MMP_RS05275 0.53 -1.8
1,008,979 - MMP_RS05275 0.70 +1.3
1,009,029 - MMP_RS05275 0.75 -1.0
1,009,052 + MMP_RS05275 0.78 +0.0
1,009,060 - MMP_RS05275 0.79 -0.9
1,009,093 - MMP_RS05275 0.82 +1.3
1,009,213 + +1.0

Or see this region's nucleotide sequence