Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05100 and MMP_RS05105 are separated by 159 nucleotides MMP_RS05105 and MMP_RS05110 are separated by 4 nucleotides MMP_RS05110 and MMP_RS05115 are separated by 10 nucleotides
MMP_RS05100: MMP_RS05100 - CO dehydrogenase/acetyl-CoA synthase complex subunit alpha, at 970,041 to 972,383
_RS05100
MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418
_RS05105
MMP_RS05110: MMP_RS05110 - 16S ribosomal RNA methyltransferase A, at 973,423 to 974,226
_RS05110
MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124
_RS05115
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 971.544 kb on - strand, within MMP_RS05100 at 971.545 kb on + strand, within MMP_RS05100 at 971.545 kb on + strand, within MMP_RS05100 at 971.552 kb on - strand, within MMP_RS05100 at 971.553 kb on + strand, within MMP_RS05100 at 971.614 kb on + strand, within MMP_RS05100 at 971.632 kb on + strand, within MMP_RS05100 at 971.673 kb on - strand, within MMP_RS05100 at 971.674 kb on + strand, within MMP_RS05100 at 971.884 kb on + strand, within MMP_RS05100 at 971.953 kb on + strand, within MMP_RS05100 at 971.953 kb on + strand, within MMP_RS05100 at 972.006 kb on - strand, within MMP_RS05100 at 972.007 kb on + strand, within MMP_RS05100 at 972.149 kb on - strand at 972.150 kb on + strand at 972.153 kb on - strand at 972.153 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.420 kb on - strand at 972.421 kb on + strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.422 kb on - strand at 972.423 kb on + strand at 972.426 kb on - strand at 972.427 kb on + strand at 972.427 kb on + strand at 972.435 kb on + strand at 972.586 kb on + strand at 972.586 kb on + strand at 972.587 kb on - strand at 972.587 kb on - strand at 972.591 kb on - strand at 972.591 kb on - strand at 972.633 kb on - strand, within MMP_RS05105 at 972.791 kb on - strand, within MMP_RS05105 at 972.842 kb on - strand, within MMP_RS05105 at 972.915 kb on - strand, within MMP_RS05105 at 972.932 kb on + strand, within MMP_RS05105 at 973.021 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.042 kb on - strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.043 kb on + strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.206 kb on - strand, within MMP_RS05105 at 973.210 kb on + strand, within MMP_RS05105 at 973.212 kb on - strand, within MMP_RS05105 at 973.213 kb on + strand, within MMP_RS05105 at 973.213 kb on + strand, within MMP_RS05105 at 973.217 kb on - strand, within MMP_RS05105 at 973.217 kb on - strand, within MMP_RS05105 at 973.280 kb on + strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.287 kb on - strand, within MMP_RS05105 at 973.298 kb on - strand, within MMP_RS05105 at 973.299 kb on + strand, within MMP_RS05105 at 973.300 kb on - strand, within MMP_RS05105 at 973.421 kb on - strand at 973.453 kb on - strand at 973.506 kb on - strand, within MMP_RS05110 at 973.671 kb on + strand, within MMP_RS05110 at 973.711 kb on - strand, within MMP_RS05110 at 973.712 kb on + strand, within MMP_RS05110 at 973.775 kb on - strand, within MMP_RS05110 at 973.776 kb on + strand, within MMP_RS05110 at 973.810 kb on + strand, within MMP_RS05110 at 973.854 kb on + strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 973.987 kb on - strand, within MMP_RS05110 at 974.243 kb on + strand at 974.243 kb on + strand at 974.249 kb on - strand at 974.365 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.413 kb on - strand, within MMP_RS05115 at 974.414 kb on + strand, within MMP_RS05115 at 974.415 kb on - strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.416 kb on + strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.417 kb on - strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115 at 974.418 kb on + strand, within MMP_RS05115
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 971,544 - MMP_RS05100 0.64 +5.0 971,545 + MMP_RS05100 0.64 +5.0 971,545 + MMP_RS05100 0.64 +6.2 971,552 - MMP_RS05100 0.64 +5.1 971,553 + MMP_RS05100 0.65 +6.8 971,614 + MMP_RS05100 0.67 +1.7 971,632 + MMP_RS05100 0.68 +3.8 971,673 - MMP_RS05100 0.70 -1.6 971,674 + MMP_RS05100 0.70 +3.8 971,884 + MMP_RS05100 0.79 +3.1 971,953 + MMP_RS05100 0.82 +4.2 971,953 + MMP_RS05100 0.82 +2.3 972,006 - MMP_RS05100 0.84 +5.8 972,007 + MMP_RS05100 0.84 +2.2 972,149 - +3.0 972,150 + +0.9 972,153 - +2.6 972,153 - -3.5 972,420 - -2.4 972,420 - +4.5 972,420 - +2.5 972,420 - +4.8 972,420 - +5.6 972,421 + +1.9 972,422 - +2.4 972,422 - -2.3 972,422 - +2.8 972,422 - +6.5 972,422 - +2.5 972,423 + +5.0 972,426 - +4.1 972,427 + +2.6 972,427 + +5.5 972,435 + +0.3 972,586 + +4.2 972,586 + +0.5 972,587 - +3.7 972,587 - +0.5 972,591 - -0.1 972,591 - +1.2 972,633 - MMP_RS05105 0.10 +3.2 972,791 - MMP_RS05105 0.28 -1.9 972,842 - MMP_RS05105 0.34 +1.0 972,915 - MMP_RS05105 0.42 +4.8 972,932 + MMP_RS05105 0.44 +2.9 973,021 - MMP_RS05105 0.55 +0.5 973,042 - MMP_RS05105 0.57 +0.0 973,042 - MMP_RS05105 0.57 -1.0 973,042 - MMP_RS05105 0.57 +0.8 973,042 - MMP_RS05105 0.57 +0.6 973,042 - MMP_RS05105 0.57 +1.2 973,043 + MMP_RS05105 0.57 +3.2 973,043 + MMP_RS05105 0.57 +3.2 973,043 + MMP_RS05105 0.57 -1.4 973,043 + MMP_RS05105 0.57 -2.8 973,206 - MMP_RS05105 0.76 +3.0 973,206 - MMP_RS05105 0.76 +1.2 973,206 - MMP_RS05105 0.76 +3.3 973,210 + MMP_RS05105 0.76 +2.8 973,212 - MMP_RS05105 0.76 +3.6 973,213 + MMP_RS05105 0.76 +2.5 973,213 + MMP_RS05105 0.76 +1.9 973,217 - MMP_RS05105 0.77 +2.7 973,217 - MMP_RS05105 0.77 +0.4 973,280 + MMP_RS05105 0.84 +3.2 973,287 - MMP_RS05105 0.85 -2.7 973,287 - MMP_RS05105 0.85 +1.1 973,287 - MMP_RS05105 0.85 +2.5 973,298 - MMP_RS05105 0.86 +1.2 973,299 + MMP_RS05105 0.86 -0.6 973,300 - MMP_RS05105 0.86 +3.2 973,421 - -0.9 973,453 - -0.4 973,506 - MMP_RS05110 0.10 +0.5 973,671 + MMP_RS05110 0.31 +1.5 973,711 - MMP_RS05110 0.36 +1.4 973,712 + MMP_RS05110 0.36 +1.6 973,775 - MMP_RS05110 0.44 -1.2 973,776 + MMP_RS05110 0.44 +0.9 973,810 + MMP_RS05110 0.48 +1.1 973,854 + MMP_RS05110 0.54 +1.1 973,987 - MMP_RS05110 0.70 +0.2 973,987 - MMP_RS05110 0.70 +1.5 974,243 + +0.8 974,243 + -2.3 974,249 - -1.4 974,365 - MMP_RS05115 0.14 -0.3 974,413 - MMP_RS05115 0.20 +1.3 974,413 - MMP_RS05115 0.20 +0.5 974,413 - MMP_RS05115 0.20 +2.2 974,413 - MMP_RS05115 0.20 +1.3 974,414 + MMP_RS05115 0.20 +2.2 974,415 - MMP_RS05115 0.20 +1.6 974,416 + MMP_RS05115 0.20 -0.7 974,416 + MMP_RS05115 0.20 +1.3 974,416 + MMP_RS05115 0.20 +1.8 974,416 + MMP_RS05115 0.20 -1.0 974,417 - MMP_RS05115 0.20 +1.7 974,417 - MMP_RS05115 0.20 -0.3 974,417 - MMP_RS05115 0.20 -0.4 974,417 - MMP_RS05115 0.20 -0.4 974,418 + MMP_RS05115 0.20 +1.7 974,418 + MMP_RS05115 0.20 -0.9 974,418 + MMP_RS05115 0.20 -0.3
Or see this region's nucleotide sequence