Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides MMP_RS04990 and MMP_RS04995 are separated by 124 nucleotides
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459
_RS04995
Position (kb) 951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.158 kb on + strand, within MMP_RS04980 at 950.239 kb on - strand, within MMP_RS04980 at 950.315 kb on - strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand at 952.128 kb on + strand at 952.176 kb on + strand at 952.176 kb on + strand at 952.180 kb on + strand at 952.199 kb on + strand at 952.318 kb on - strand, within MMP_RS04995 at 952.319 kb on + strand, within MMP_RS04995
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 950,158 + MMP_RS04980 0.36 +1.6 950,239 - MMP_RS04980 0.42 -0.8 950,315 - MMP_RS04980 0.47 -2.0 950,323 + MMP_RS04980 0.47 -1.8 950,323 + MMP_RS04980 0.47 -1.5 950,359 - MMP_RS04980 0.50 +0.4 950,360 + MMP_RS04980 0.50 +1.0 950,401 - MMP_RS04980 0.53 +0.4 950,406 + MMP_RS04980 0.53 -2.9 950,416 + MMP_RS04980 0.54 -2.5 950,416 + MMP_RS04980 0.54 -1.7 950,416 + MMP_RS04980 0.54 +0.4 950,416 + MMP_RS04980 0.54 -1.9 950,522 - MMP_RS04980 0.61 -1.1 950,523 + MMP_RS04980 0.61 -2.1 950,566 - MMP_RS04980 0.64 -0.2 950,567 + MMP_RS04980 0.64 +0.5 950,567 + MMP_RS04980 0.64 +0.3 950,609 - MMP_RS04980 0.67 +0.2 950,609 - MMP_RS04980 0.67 -1.1 950,648 + MMP_RS04980 0.69 -0.8 950,677 + MMP_RS04980 0.71 +2.6 950,681 + MMP_RS04980 0.71 -2.2 950,746 + MMP_RS04980 0.76 -0.9 950,746 + MMP_RS04980 0.76 +0.2 950,747 - MMP_RS04980 0.76 +0.4 950,761 - MMP_RS04980 0.77 +0.8 950,865 + MMP_RS04980 0.84 -1.1 950,884 + MMP_RS04980 0.85 -2.2 951,085 + +0.6 951,107 + +1.6 951,108 - -0.4 951,113 - +1.1 951,114 + +1.0 951,120 + -0.1 951,156 + -0.2 951,238 + MMP_RS04985 0.43 -1.3 951,238 + MMP_RS04985 0.43 -1.2 951,240 - MMP_RS04985 0.44 -0.7 951,241 + MMP_RS04985 0.44 -3.5 951,241 + MMP_RS04985 0.44 +0.1 951,335 + MMP_RS04985 0.88 -1.6 951,565 + MMP_RS04990 0.29 -1.2 951,565 + MMP_RS04990 0.29 -1.0 951,636 - MMP_RS04990 0.39 -1.2 951,644 - MMP_RS04990 0.40 -0.6 951,647 + MMP_RS04990 0.40 +0.7 951,648 - MMP_RS04990 0.40 +0.5 951,649 + MMP_RS04990 0.40 +1.1 951,649 + MMP_RS04990 0.40 +0.4 951,762 + MMP_RS04990 0.56 +0.0 951,973 + MMP_RS04990 0.85 -1.9 951,995 + MMP_RS04990 0.88 -1.0 951,998 + MMP_RS04990 0.89 -2.3 952,007 - +0.7 952,009 - -0.9 952,009 - -1.8 952,009 - +0.6 952,009 - -1.4 952,010 + -1.0 952,010 + +1.4 952,010 + -0.2 952,011 - +0.4 952,011 - -2.0 952,012 + -3.3 952,012 + -1.7 952,012 + -2.2 952,012 + +2.1 952,037 - +0.9 952,037 - -3.2 952,037 - +1.3 952,037 - -0.9 952,038 + +0.5 952,038 + -0.7 952,054 - -3.4 952,054 - -2.8 952,054 - -0.5 952,075 - -1.2 952,075 - -2.1 952,128 + +0.9 952,176 + -1.3 952,176 + -0.5 952,180 + -1.9 952,199 + +1.3 952,318 - MMP_RS04995 0.45 +0.8 952,319 + MMP_RS04995 0.45 -0.3
Or see this region's nucleotide sequence