Experiment: McCas_formate_complete nitrate 35.7142857142857 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04975 and MMP_RS04980 are separated by 340 nucleotides MMP_RS04980 and MMP_RS04985 are separated by 35 nucleotides MMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides
MMP_RS04975: MMP_RS04975 - hypothetical protein, at 948,263 to 949,270
_RS04975
MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110
_RS04980
MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361
_RS04985
MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077
_RS04990
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 948.752 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.791 kb on - strand, within MMP_RS04975 at 948.792 kb on + strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.798 kb on - strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.799 kb on + strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.803 kb on - strand, within MMP_RS04975 at 948.804 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.806 kb on + strand, within MMP_RS04975 at 948.826 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.831 kb on - strand, within MMP_RS04975 at 948.832 kb on + strand, within MMP_RS04975 at 948.840 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.904 kb on + strand, within MMP_RS04975 at 948.928 kb on + strand, within MMP_RS04975 at 948.938 kb on - strand, within MMP_RS04975 at 948.939 kb on + strand, within MMP_RS04975 at 948.943 kb on - strand, within MMP_RS04975 at 948.987 kb on - strand, within MMP_RS04975 at 949.010 kb on - strand, within MMP_RS04975 at 949.022 kb on - strand, within MMP_RS04975 at 949.039 kb on - strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.040 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.048 kb on + strand, within MMP_RS04975 at 949.093 kb on - strand, within MMP_RS04975 at 949.097 kb on + strand, within MMP_RS04975 at 949.188 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.225 kb on - strand at 949.226 kb on + strand at 949.231 kb on - strand at 949.232 kb on + strand at 949.239 kb on + strand at 949.313 kb on - strand at 949.313 kb on - strand at 949.314 kb on + strand at 949.335 kb on - strand at 949.336 kb on + strand at 949.382 kb on + strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.384 kb on - strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.385 kb on + strand at 949.386 kb on - strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.387 kb on + strand at 949.390 kb on - strand at 949.420 kb on - strand at 949.431 kb on - strand at 949.445 kb on - strand at 949.460 kb on - strand at 949.491 kb on - strand at 949.491 kb on - strand at 949.493 kb on - strand at 949.493 kb on - strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.494 kb on + strand at 949.497 kb on + strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.498 kb on - strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.499 kb on + strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.501 kb on - strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.502 kb on + strand at 949.518 kb on + strand at 949.526 kb on - strand at 949.526 kb on - strand at 949.527 kb on + strand at 949.545 kb on - strand at 949.546 kb on + strand at 949.622 kb on + strand at 949.679 kb on - strand at 949.718 kb on - strand at 949.729 kb on - strand at 949.843 kb on - strand, within MMP_RS04980 at 949.889 kb on - strand, within MMP_RS04980 at 949.890 kb on + strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.891 kb on - strand, within MMP_RS04980 at 949.901 kb on + strand, within MMP_RS04980 at 950.060 kb on - strand, within MMP_RS04980 at 950.061 kb on + strand, within MMP_RS04980 at 950.092 kb on - strand, within MMP_RS04980 at 950.158 kb on + strand, within MMP_RS04980 at 950.239 kb on - strand, within MMP_RS04980 at 950.315 kb on - strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.323 kb on + strand, within MMP_RS04980 at 950.359 kb on - strand, within MMP_RS04980 at 950.360 kb on + strand, within MMP_RS04980 at 950.401 kb on - strand, within MMP_RS04980 at 950.406 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.416 kb on + strand, within MMP_RS04980 at 950.522 kb on - strand, within MMP_RS04980 at 950.523 kb on + strand, within MMP_RS04980 at 950.566 kb on - strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.567 kb on + strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.609 kb on - strand, within MMP_RS04980 at 950.648 kb on + strand, within MMP_RS04980 at 950.677 kb on + strand, within MMP_RS04980 at 950.681 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.746 kb on + strand, within MMP_RS04980 at 950.747 kb on - strand, within MMP_RS04980 at 950.761 kb on - strand, within MMP_RS04980 at 950.865 kb on + strand, within MMP_RS04980 at 950.884 kb on + strand, within MMP_RS04980 at 951.085 kb on + strand at 951.107 kb on + strand at 951.108 kb on - strand at 951.113 kb on - strand at 951.114 kb on + strand at 951.120 kb on + strand at 951.156 kb on + strand at 951.238 kb on + strand, within MMP_RS04985 at 951.238 kb on + strand, within MMP_RS04985 at 951.240 kb on - strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.241 kb on + strand, within MMP_RS04985 at 951.335 kb on + strand, within MMP_RS04985 at 951.565 kb on + strand, within MMP_RS04990 at 951.565 kb on + strand, within MMP_RS04990 at 951.636 kb on - strand, within MMP_RS04990 at 951.644 kb on - strand, within MMP_RS04990 at 951.647 kb on + strand, within MMP_RS04990 at 951.648 kb on - strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.649 kb on + strand, within MMP_RS04990 at 951.762 kb on + strand, within MMP_RS04990 at 951.973 kb on + strand, within MMP_RS04990 at 951.995 kb on + strand, within MMP_RS04990 at 951.998 kb on + strand, within MMP_RS04990 at 952.007 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.009 kb on - strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.010 kb on + strand at 952.011 kb on - strand at 952.011 kb on - strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.012 kb on + strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.037 kb on - strand at 952.038 kb on + strand at 952.038 kb on + strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.054 kb on - strand at 952.075 kb on - strand at 952.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM remove 948,752 - MMP_RS04975 0.49 +0.1 948,791 - MMP_RS04975 0.52 -2.2 948,791 - MMP_RS04975 0.52 +1.6 948,792 + MMP_RS04975 0.52 +0.3 948,798 - MMP_RS04975 0.53 +2.2 948,798 - MMP_RS04975 0.53 -0.0 948,798 - MMP_RS04975 0.53 +2.7 948,799 + MMP_RS04975 0.53 -1.1 948,799 + MMP_RS04975 0.53 +0.6 948,799 + MMP_RS04975 0.53 +1.2 948,803 - MMP_RS04975 0.54 +0.4 948,803 - MMP_RS04975 0.54 -2.1 948,803 - MMP_RS04975 0.54 +0.6 948,803 - MMP_RS04975 0.54 -0.1 948,804 + MMP_RS04975 0.54 -0.6 948,806 + MMP_RS04975 0.54 -1.7 948,806 + MMP_RS04975 0.54 +1.5 948,806 + MMP_RS04975 0.54 -1.3 948,826 - MMP_RS04975 0.56 -1.4 948,831 - MMP_RS04975 0.56 +0.6 948,831 - MMP_RS04975 0.56 -1.1 948,832 + MMP_RS04975 0.56 -1.0 948,840 + MMP_RS04975 0.57 +0.7 948,904 + MMP_RS04975 0.64 +1.1 948,904 + MMP_RS04975 0.64 -2.2 948,904 + MMP_RS04975 0.64 -1.0 948,928 + MMP_RS04975 0.66 +0.9 948,938 - MMP_RS04975 0.67 -3.3 948,939 + MMP_RS04975 0.67 +0.9 948,943 - MMP_RS04975 0.67 +1.0 948,987 - MMP_RS04975 0.72 -0.1 949,010 - MMP_RS04975 0.74 +1.6 949,022 - MMP_RS04975 0.75 +0.4 949,039 - MMP_RS04975 0.77 +0.1 949,040 + MMP_RS04975 0.77 -0.7 949,040 + MMP_RS04975 0.77 +1.6 949,048 + MMP_RS04975 0.78 +1.4 949,048 + MMP_RS04975 0.78 -2.2 949,048 + MMP_RS04975 0.78 +1.0 949,093 - MMP_RS04975 0.82 -1.2 949,097 + MMP_RS04975 0.83 -0.6 949,188 - +0.6 949,225 - +0.6 949,225 - -1.4 949,225 - +0.9 949,225 - +0.3 949,225 - +1.8 949,225 - -0.3 949,226 + -1.2 949,231 - -1.5 949,232 + +1.5 949,239 + -0.5 949,313 - +1.7 949,313 - +0.6 949,314 + +1.2 949,335 - -1.2 949,336 + +0.0 949,382 + -1.7 949,384 - -2.1 949,384 - +0.2 949,384 - -0.5 949,384 - +0.7 949,384 - -0.7 949,385 + -0.8 949,385 + +1.2 949,385 + -0.8 949,385 + -1.4 949,386 - +0.8 949,387 + +0.2 949,387 + -1.1 949,387 + +2.0 949,387 + +1.3 949,387 + +2.4 949,387 + -0.4 949,390 - -0.5 949,420 - -0.9 949,431 - -0.3 949,445 - +1.0 949,460 - -1.2 949,491 - -2.3 949,491 - +0.9 949,493 - +0.0 949,493 - -3.1 949,494 + -0.5 949,494 + -1.4 949,494 + -1.3 949,494 + -0.3 949,494 + -0.4 949,497 + -2.9 949,498 - -1.2 949,498 - -2.9 949,498 - -1.2 949,499 + +1.3 949,499 + -1.7 949,499 + +0.1 949,499 + -0.7 949,501 - -2.6 949,501 - -1.4 949,501 - +0.5 949,501 - -2.9 949,501 - +0.8 949,501 - -0.5 949,501 - -1.5 949,501 - -1.8 949,501 - -2.4 949,502 + -1.0 949,502 + +1.7 949,502 + -1.4 949,502 + -1.6 949,502 + -1.2 949,502 + -0.4 949,502 + +0.7 949,518 + -1.1 949,526 - -2.9 949,526 - -1.0 949,527 + -3.2 949,545 - +0.4 949,546 + -0.8 949,622 + -0.9 949,679 - -3.9 949,718 - +0.6 949,729 - -0.6 949,843 - MMP_RS04980 0.15 -1.8 949,889 - MMP_RS04980 0.19 -1.7 949,890 + MMP_RS04980 0.19 +0.4 949,891 - MMP_RS04980 0.19 -1.0 949,891 - MMP_RS04980 0.19 -1.1 949,901 + MMP_RS04980 0.19 +0.4 950,060 - MMP_RS04980 0.30 -2.3 950,061 + MMP_RS04980 0.30 -1.7 950,092 - MMP_RS04980 0.32 -2.5 950,158 + MMP_RS04980 0.36 +1.6 950,239 - MMP_RS04980 0.42 -0.8 950,315 - MMP_RS04980 0.47 -2.0 950,323 + MMP_RS04980 0.47 -1.8 950,323 + MMP_RS04980 0.47 -1.5 950,359 - MMP_RS04980 0.50 +0.4 950,360 + MMP_RS04980 0.50 +1.0 950,401 - MMP_RS04980 0.53 +0.4 950,406 + MMP_RS04980 0.53 -2.9 950,416 + MMP_RS04980 0.54 -2.5 950,416 + MMP_RS04980 0.54 -1.7 950,416 + MMP_RS04980 0.54 +0.4 950,416 + MMP_RS04980 0.54 -1.9 950,522 - MMP_RS04980 0.61 -1.1 950,523 + MMP_RS04980 0.61 -2.1 950,566 - MMP_RS04980 0.64 -0.2 950,567 + MMP_RS04980 0.64 +0.5 950,567 + MMP_RS04980 0.64 +0.3 950,609 - MMP_RS04980 0.67 +0.2 950,609 - MMP_RS04980 0.67 -1.1 950,648 + MMP_RS04980 0.69 -0.8 950,677 + MMP_RS04980 0.71 +2.6 950,681 + MMP_RS04980 0.71 -2.2 950,746 + MMP_RS04980 0.76 -0.9 950,746 + MMP_RS04980 0.76 +0.2 950,747 - MMP_RS04980 0.76 +0.4 950,761 - MMP_RS04980 0.77 +0.8 950,865 + MMP_RS04980 0.84 -1.1 950,884 + MMP_RS04980 0.85 -2.2 951,085 + +0.6 951,107 + +1.6 951,108 - -0.4 951,113 - +1.1 951,114 + +1.0 951,120 + -0.1 951,156 + -0.2 951,238 + MMP_RS04985 0.43 -1.3 951,238 + MMP_RS04985 0.43 -1.2 951,240 - MMP_RS04985 0.44 -0.7 951,241 + MMP_RS04985 0.44 -3.5 951,241 + MMP_RS04985 0.44 +0.1 951,335 + MMP_RS04985 0.88 -1.6 951,565 + MMP_RS04990 0.29 -1.2 951,565 + MMP_RS04990 0.29 -1.0 951,636 - MMP_RS04990 0.39 -1.2 951,644 - MMP_RS04990 0.40 -0.6 951,647 + MMP_RS04990 0.40 +0.7 951,648 - MMP_RS04990 0.40 +0.5 951,649 + MMP_RS04990 0.40 +1.1 951,649 + MMP_RS04990 0.40 +0.4 951,762 + MMP_RS04990 0.56 +0.0 951,973 + MMP_RS04990 0.85 -1.9 951,995 + MMP_RS04990 0.88 -1.0 951,998 + MMP_RS04990 0.89 -2.3 952,007 - +0.7 952,009 - -0.9 952,009 - -1.8 952,009 - +0.6 952,009 - -1.4 952,010 + -1.0 952,010 + +1.4 952,010 + -0.2 952,011 - +0.4 952,011 - -2.0 952,012 + -3.3 952,012 + -1.7 952,012 + -2.2 952,012 + +2.1 952,037 - +0.9 952,037 - -3.2 952,037 - +1.3 952,037 - -0.9 952,038 + +0.5 952,038 + -0.7 952,054 - -3.4 952,054 - -2.8 952,054 - -0.5 952,075 - -1.2 952,075 - -2.1
Or see this region's nucleotide sequence