Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04980

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04975 and MMP_RS04980 are separated by 340 nucleotidesMMP_RS04980 and MMP_RS04985 are separated by 35 nucleotidesMMP_RS04985 and MMP_RS04990 overlap by 4 nucleotides MMP_RS04975: MMP_RS04975 - hypothetical protein, at 948,263 to 949,270 _RS04975 MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110 _RS04980 MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361 _RS04985 MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077 _RS04990 Position (kb) 949 950 951 952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 948.752 kb on - strand, within MMP_RS04975at 948.791 kb on - strand, within MMP_RS04975at 948.791 kb on - strand, within MMP_RS04975at 948.792 kb on + strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.804 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.826 kb on - strand, within MMP_RS04975at 948.831 kb on - strand, within MMP_RS04975at 948.831 kb on - strand, within MMP_RS04975at 948.832 kb on + strand, within MMP_RS04975at 948.840 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.928 kb on + strand, within MMP_RS04975at 948.938 kb on - strand, within MMP_RS04975at 948.939 kb on + strand, within MMP_RS04975at 948.943 kb on - strand, within MMP_RS04975at 948.987 kb on - strand, within MMP_RS04975at 949.010 kb on - strand, within MMP_RS04975at 949.022 kb on - strand, within MMP_RS04975at 949.039 kb on - strand, within MMP_RS04975at 949.040 kb on + strand, within MMP_RS04975at 949.040 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.093 kb on - strand, within MMP_RS04975at 949.097 kb on + strand, within MMP_RS04975at 949.188 kb on - strandat 949.225 kb on - strandat 949.225 kb on - strandat 949.225 kb on - strandat 949.225 kb on - strandat 949.225 kb on - strandat 949.225 kb on - strandat 949.226 kb on + strandat 949.231 kb on - strandat 949.232 kb on + strandat 949.239 kb on + strandat 949.313 kb on - strandat 949.313 kb on - strandat 949.314 kb on + strandat 949.335 kb on - strandat 949.336 kb on + strandat 949.382 kb on + strandat 949.384 kb on - strandat 949.384 kb on - strandat 949.384 kb on - strandat 949.384 kb on - strandat 949.384 kb on - strandat 949.385 kb on + strandat 949.385 kb on + strandat 949.385 kb on + strandat 949.385 kb on + strandat 949.386 kb on - strandat 949.387 kb on + strandat 949.387 kb on + strandat 949.387 kb on + strandat 949.387 kb on + strandat 949.387 kb on + strandat 949.387 kb on + strandat 949.390 kb on - strandat 949.420 kb on - strandat 949.431 kb on - strandat 949.445 kb on - strandat 949.460 kb on - strandat 949.491 kb on - strandat 949.491 kb on - strandat 949.493 kb on - strandat 949.493 kb on - strandat 949.494 kb on + strandat 949.494 kb on + strandat 949.494 kb on + strandat 949.494 kb on + strandat 949.494 kb on + strandat 949.497 kb on + strandat 949.498 kb on - strandat 949.498 kb on - strandat 949.498 kb on - strandat 949.499 kb on + strandat 949.499 kb on + strandat 949.499 kb on + strandat 949.499 kb on + strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.501 kb on - strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.502 kb on + strandat 949.518 kb on + strandat 949.526 kb on - strandat 949.526 kb on - strandat 949.527 kb on + strandat 949.545 kb on - strandat 949.546 kb on + strandat 949.622 kb on + strandat 949.679 kb on - strandat 949.718 kb on - strandat 949.729 kb on - strandat 949.843 kb on - strand, within MMP_RS04980at 949.889 kb on - strand, within MMP_RS04980at 949.890 kb on + strand, within MMP_RS04980at 949.891 kb on - strand, within MMP_RS04980at 949.891 kb on - strand, within MMP_RS04980at 949.901 kb on + strand, within MMP_RS04980at 950.060 kb on - strand, within MMP_RS04980at 950.061 kb on + strand, within MMP_RS04980at 950.092 kb on - strand, within MMP_RS04980at 950.158 kb on + strand, within MMP_RS04980at 950.239 kb on - strand, within MMP_RS04980at 950.315 kb on - strand, within MMP_RS04980at 950.323 kb on + strand, within MMP_RS04980at 950.323 kb on + strand, within MMP_RS04980at 950.359 kb on - strand, within MMP_RS04980at 950.360 kb on + strand, within MMP_RS04980at 950.401 kb on - strand, within MMP_RS04980at 950.406 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.522 kb on - strand, within MMP_RS04980at 950.523 kb on + strand, within MMP_RS04980at 950.566 kb on - strand, within MMP_RS04980at 950.567 kb on + strand, within MMP_RS04980at 950.567 kb on + strand, within MMP_RS04980at 950.609 kb on - strand, within MMP_RS04980at 950.609 kb on - strand, within MMP_RS04980at 950.648 kb on + strand, within MMP_RS04980at 950.677 kb on + strand, within MMP_RS04980at 950.681 kb on + strand, within MMP_RS04980at 950.746 kb on + strand, within MMP_RS04980at 950.746 kb on + strand, within MMP_RS04980at 950.747 kb on - strand, within MMP_RS04980at 950.761 kb on - strand, within MMP_RS04980at 950.865 kb on + strand, within MMP_RS04980at 950.884 kb on + strand, within MMP_RS04980at 951.085 kb on + strandat 951.107 kb on + strandat 951.108 kb on - strandat 951.113 kb on - strandat 951.114 kb on + strandat 951.120 kb on + strandat 951.156 kb on + strandat 951.238 kb on + strand, within MMP_RS04985at 951.238 kb on + strand, within MMP_RS04985at 951.240 kb on - strand, within MMP_RS04985at 951.241 kb on + strand, within MMP_RS04985at 951.241 kb on + strand, within MMP_RS04985at 951.335 kb on + strand, within MMP_RS04985at 951.565 kb on + strand, within MMP_RS04990at 951.565 kb on + strand, within MMP_RS04990at 951.636 kb on - strand, within MMP_RS04990at 951.644 kb on - strand, within MMP_RS04990at 951.647 kb on + strand, within MMP_RS04990at 951.648 kb on - strand, within MMP_RS04990at 951.649 kb on + strand, within MMP_RS04990at 951.649 kb on + strand, within MMP_RS04990at 951.762 kb on + strand, within MMP_RS04990at 951.973 kb on + strand, within MMP_RS04990at 951.995 kb on + strand, within MMP_RS04990at 951.998 kb on + strand, within MMP_RS04990at 952.007 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.010 kb on + strandat 952.010 kb on + strandat 952.010 kb on + strandat 952.011 kb on - strandat 952.011 kb on - strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.038 kb on + strandat 952.038 kb on + strandat 952.054 kb on - strandat 952.054 kb on - strandat 952.054 kb on - strandat 952.075 kb on - strandat 952.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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948,752 - MMP_RS04975 0.49 +0.1
948,791 - MMP_RS04975 0.52 -2.2
948,791 - MMP_RS04975 0.52 +1.6
948,792 + MMP_RS04975 0.52 +0.3
948,798 - MMP_RS04975 0.53 +2.2
948,798 - MMP_RS04975 0.53 -0.0
948,798 - MMP_RS04975 0.53 +2.7
948,799 + MMP_RS04975 0.53 -1.1
948,799 + MMP_RS04975 0.53 +0.6
948,799 + MMP_RS04975 0.53 +1.2
948,803 - MMP_RS04975 0.54 +0.4
948,803 - MMP_RS04975 0.54 -2.1
948,803 - MMP_RS04975 0.54 +0.6
948,803 - MMP_RS04975 0.54 -0.1
948,804 + MMP_RS04975 0.54 -0.6
948,806 + MMP_RS04975 0.54 -1.7
948,806 + MMP_RS04975 0.54 +1.5
948,806 + MMP_RS04975 0.54 -1.3
948,826 - MMP_RS04975 0.56 -1.4
948,831 - MMP_RS04975 0.56 +0.6
948,831 - MMP_RS04975 0.56 -1.1
948,832 + MMP_RS04975 0.56 -1.0
948,840 + MMP_RS04975 0.57 +0.7
948,904 + MMP_RS04975 0.64 +1.1
948,904 + MMP_RS04975 0.64 -2.2
948,904 + MMP_RS04975 0.64 -1.0
948,928 + MMP_RS04975 0.66 +0.9
948,938 - MMP_RS04975 0.67 -3.3
948,939 + MMP_RS04975 0.67 +0.9
948,943 - MMP_RS04975 0.67 +1.0
948,987 - MMP_RS04975 0.72 -0.1
949,010 - MMP_RS04975 0.74 +1.6
949,022 - MMP_RS04975 0.75 +0.4
949,039 - MMP_RS04975 0.77 +0.1
949,040 + MMP_RS04975 0.77 -0.7
949,040 + MMP_RS04975 0.77 +1.6
949,048 + MMP_RS04975 0.78 +1.4
949,048 + MMP_RS04975 0.78 -2.2
949,048 + MMP_RS04975 0.78 +1.0
949,093 - MMP_RS04975 0.82 -1.2
949,097 + MMP_RS04975 0.83 -0.6
949,188 - +0.6
949,225 - +0.6
949,225 - -1.4
949,225 - +0.9
949,225 - +0.3
949,225 - +1.8
949,225 - -0.3
949,226 + -1.2
949,231 - -1.5
949,232 + +1.5
949,239 + -0.5
949,313 - +1.7
949,313 - +0.6
949,314 + +1.2
949,335 - -1.2
949,336 + +0.0
949,382 + -1.7
949,384 - -2.1
949,384 - +0.2
949,384 - -0.5
949,384 - +0.7
949,384 - -0.7
949,385 + -0.8
949,385 + +1.2
949,385 + -0.8
949,385 + -1.4
949,386 - +0.8
949,387 + +0.2
949,387 + -1.1
949,387 + +2.0
949,387 + +1.3
949,387 + +2.4
949,387 + -0.4
949,390 - -0.5
949,420 - -0.9
949,431 - -0.3
949,445 - +1.0
949,460 - -1.2
949,491 - -2.3
949,491 - +0.9
949,493 - +0.0
949,493 - -3.1
949,494 + -0.5
949,494 + -1.4
949,494 + -1.3
949,494 + -0.3
949,494 + -0.4
949,497 + -2.9
949,498 - -1.2
949,498 - -2.9
949,498 - -1.2
949,499 + +1.3
949,499 + -1.7
949,499 + +0.1
949,499 + -0.7
949,501 - -2.6
949,501 - -1.4
949,501 - +0.5
949,501 - -2.9
949,501 - +0.8
949,501 - -0.5
949,501 - -1.5
949,501 - -1.8
949,501 - -2.4
949,502 + -1.0
949,502 + +1.7
949,502 + -1.4
949,502 + -1.6
949,502 + -1.2
949,502 + -0.4
949,502 + +0.7
949,518 + -1.1
949,526 - -2.9
949,526 - -1.0
949,527 + -3.2
949,545 - +0.4
949,546 + -0.8
949,622 + -0.9
949,679 - -3.9
949,718 - +0.6
949,729 - -0.6
949,843 - MMP_RS04980 0.15 -1.8
949,889 - MMP_RS04980 0.19 -1.7
949,890 + MMP_RS04980 0.19 +0.4
949,891 - MMP_RS04980 0.19 -1.0
949,891 - MMP_RS04980 0.19 -1.1
949,901 + MMP_RS04980 0.19 +0.4
950,060 - MMP_RS04980 0.30 -2.3
950,061 + MMP_RS04980 0.30 -1.7
950,092 - MMP_RS04980 0.32 -2.5
950,158 + MMP_RS04980 0.36 +1.6
950,239 - MMP_RS04980 0.42 -0.8
950,315 - MMP_RS04980 0.47 -2.0
950,323 + MMP_RS04980 0.47 -1.8
950,323 + MMP_RS04980 0.47 -1.5
950,359 - MMP_RS04980 0.50 +0.4
950,360 + MMP_RS04980 0.50 +1.0
950,401 - MMP_RS04980 0.53 +0.4
950,406 + MMP_RS04980 0.53 -2.9
950,416 + MMP_RS04980 0.54 -2.5
950,416 + MMP_RS04980 0.54 -1.7
950,416 + MMP_RS04980 0.54 +0.4
950,416 + MMP_RS04980 0.54 -1.9
950,522 - MMP_RS04980 0.61 -1.1
950,523 + MMP_RS04980 0.61 -2.1
950,566 - MMP_RS04980 0.64 -0.2
950,567 + MMP_RS04980 0.64 +0.5
950,567 + MMP_RS04980 0.64 +0.3
950,609 - MMP_RS04980 0.67 +0.2
950,609 - MMP_RS04980 0.67 -1.1
950,648 + MMP_RS04980 0.69 -0.8
950,677 + MMP_RS04980 0.71 +2.6
950,681 + MMP_RS04980 0.71 -2.2
950,746 + MMP_RS04980 0.76 -0.9
950,746 + MMP_RS04980 0.76 +0.2
950,747 - MMP_RS04980 0.76 +0.4
950,761 - MMP_RS04980 0.77 +0.8
950,865 + MMP_RS04980 0.84 -1.1
950,884 + MMP_RS04980 0.85 -2.2
951,085 + +0.6
951,107 + +1.6
951,108 - -0.4
951,113 - +1.1
951,114 + +1.0
951,120 + -0.1
951,156 + -0.2
951,238 + MMP_RS04985 0.43 -1.3
951,238 + MMP_RS04985 0.43 -1.2
951,240 - MMP_RS04985 0.44 -0.7
951,241 + MMP_RS04985 0.44 -3.5
951,241 + MMP_RS04985 0.44 +0.1
951,335 + MMP_RS04985 0.88 -1.6
951,565 + MMP_RS04990 0.29 -1.2
951,565 + MMP_RS04990 0.29 -1.0
951,636 - MMP_RS04990 0.39 -1.2
951,644 - MMP_RS04990 0.40 -0.6
951,647 + MMP_RS04990 0.40 +0.7
951,648 - MMP_RS04990 0.40 +0.5
951,649 + MMP_RS04990 0.40 +1.1
951,649 + MMP_RS04990 0.40 +0.4
951,762 + MMP_RS04990 0.56 +0.0
951,973 + MMP_RS04990 0.85 -1.9
951,995 + MMP_RS04990 0.88 -1.0
951,998 + MMP_RS04990 0.89 -2.3
952,007 - +0.7
952,009 - -0.9
952,009 - -1.8
952,009 - +0.6
952,009 - -1.4
952,010 + -1.0
952,010 + +1.4
952,010 + -0.2
952,011 - +0.4
952,011 - -2.0
952,012 + -3.3
952,012 + -1.7
952,012 + -2.2
952,012 + +2.1
952,037 - +0.9
952,037 - -3.2
952,037 - +1.3
952,037 - -0.9
952,038 + +0.5
952,038 + -0.7
952,054 - -3.4
952,054 - -2.8
952,054 - -0.5
952,075 - -1.2
952,075 - -2.1

Or see this region's nucleotide sequence