Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04480

Experiment: McCas_formate_complete nitrate 35.7142857142857 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04470 and MMP_RS04475 overlap by 35 nucleotidesMMP_RS04475 and MMP_RS04480 are separated by 575 nucleotidesMMP_RS04480 and MMP_RS04485 are separated by 0 nucleotidesMMP_RS04485 and MMP_RS04490 are separated by 149 nucleotides MMP_RS04470: MMP_RS04470 - nitrogenase, at 849,999 to 851,375 _RS04470 MMP_RS04475: MMP_RS04475 - nitrogen fixation, at 851,341 to 851,661 _RS04475 MMP_RS04480: MMP_RS04480 - lysine 2 3-aminomutase, at 852,237 to 853,538 _RS04480 MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363 _RS04485 MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989 _RS04490 Position (kb) 852 853 854Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 851.239 kb on + strandat 851.240 kb on - strandat 851.241 kb on + strandat 851.260 kb on - strandat 851.261 kb on + strandat 851.264 kb on - strandat 851.264 kb on - strandat 851.264 kb on - strandat 851.267 kb on - strandat 851.268 kb on + strandat 851.268 kb on + strandat 851.269 kb on - strandat 851.269 kb on - strandat 851.276 kb on - strandat 851.293 kb on + strandat 851.382 kb on + strand, within MMP_RS04475at 851.382 kb on + strand, within MMP_RS04475at 851.444 kb on - strand, within MMP_RS04475at 851.484 kb on - strand, within MMP_RS04475at 851.486 kb on - strand, within MMP_RS04475at 851.513 kb on + strand, within MMP_RS04475at 851.934 kb on - strandat 851.944 kb on - strandat 851.945 kb on + strandat 851.957 kb on + strandat 851.966 kb on - strandat 851.971 kb on - strandat 851.972 kb on + strandat 851.975 kb on - strandat 851.976 kb on + strandat 851.976 kb on + strandat 851.976 kb on + strandat 851.998 kb on - strandat 852.002 kb on - strandat 852.041 kb on - strandat 852.046 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.051 kb on - strandat 852.054 kb on + strandat 852.056 kb on - strandat 852.057 kb on + strandat 852.057 kb on + strandat 852.074 kb on + strandat 852.102 kb on - strandat 852.102 kb on - strandat 852.103 kb on + strandat 852.105 kb on + strandat 852.179 kb on - strandat 852.180 kb on + strandat 852.247 kb on - strandat 852.248 kb on + strandat 852.260 kb on - strandat 852.265 kb on - strandat 852.319 kb on + strandat 852.421 kb on - strand, within MMP_RS04480at 852.422 kb on + strand, within MMP_RS04480at 852.428 kb on + strand, within MMP_RS04480at 852.428 kb on + strand, within MMP_RS04480at 852.443 kb on - strand, within MMP_RS04480at 852.451 kb on + strand, within MMP_RS04480at 852.453 kb on - strand, within MMP_RS04480at 852.454 kb on + strand, within MMP_RS04480at 852.454 kb on + strand, within MMP_RS04480at 852.454 kb on + strand, within MMP_RS04480at 852.463 kb on - strand, within MMP_RS04480at 852.500 kb on - strand, within MMP_RS04480at 852.533 kb on + strand, within MMP_RS04480at 852.533 kb on + strand, within MMP_RS04480at 852.622 kb on - strand, within MMP_RS04480at 852.627 kb on - strand, within MMP_RS04480at 852.632 kb on + strand, within MMP_RS04480at 852.741 kb on + strand, within MMP_RS04480at 852.752 kb on - strand, within MMP_RS04480at 852.753 kb on + strand, within MMP_RS04480at 852.757 kb on - strand, within MMP_RS04480at 852.812 kb on + strand, within MMP_RS04480at 852.840 kb on + strand, within MMP_RS04480at 852.858 kb on + strand, within MMP_RS04480at 852.953 kb on - strand, within MMP_RS04480at 852.953 kb on - strand, within MMP_RS04480at 852.954 kb on + strand, within MMP_RS04480at 853.077 kb on - strand, within MMP_RS04480at 853.077 kb on - strand, within MMP_RS04480at 853.078 kb on + strand, within MMP_RS04480at 853.129 kb on + strand, within MMP_RS04480at 853.131 kb on - strand, within MMP_RS04480at 853.131 kb on - strand, within MMP_RS04480at 853.132 kb on + strand, within MMP_RS04480at 853.214 kb on + strand, within MMP_RS04480at 853.245 kb on + strand, within MMP_RS04480at 853.248 kb on - strand, within MMP_RS04480at 853.248 kb on - strand, within MMP_RS04480at 853.249 kb on + strand, within MMP_RS04480at 853.255 kb on - strand, within MMP_RS04480at 853.299 kb on - strand, within MMP_RS04480at 853.300 kb on + strand, within MMP_RS04480at 853.362 kb on - strand, within MMP_RS04480at 853.478 kb on + strandat 853.495 kb on - strandat 853.495 kb on - strandat 853.496 kb on + strandat 853.580 kb on + strandat 853.600 kb on - strandat 853.601 kb on + strandat 853.601 kb on + strandat 853.601 kb on + strandat 853.602 kb on - strandat 853.602 kb on - strandat 853.603 kb on + strandat 853.604 kb on - strandat 853.605 kb on + strandat 853.735 kb on + strand, within MMP_RS04485at 853.782 kb on - strand, within MMP_RS04485at 853.783 kb on + strand, within MMP_RS04485at 853.787 kb on - strand, within MMP_RS04485at 853.788 kb on + strand, within MMP_RS04485at 853.788 kb on + strand, within MMP_RS04485at 853.945 kb on - strand, within MMP_RS04485at 853.945 kb on - strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.008 kb on - strand, within MMP_RS04485at 854.009 kb on + strand, within MMP_RS04485at 854.011 kb on - strand, within MMP_RS04485at 854.032 kb on - strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.167 kb on + strand, within MMP_RS04485at 854.175 kb on - strand, within MMP_RS04485at 854.177 kb on - strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.279 kb on - strand, within MMP_RS04485at 854.303 kb on - strandat 854.306 kb on - strandat 854.306 kb on - strandat 854.346 kb on - strandat 854.425 kb on + strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.430 kb on - strandat 854.431 kb on + strandat 854.431 kb on + strandat 854.481 kb on - strandat 854.486 kb on - strandat 854.492 kb on + strandat 854.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_formate_complete nitrate 35.7142857142857 mM
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851,239 + +1.2
851,240 - -1.4
851,241 + +0.6
851,260 - +1.1
851,261 + -0.7
851,264 - -0.4
851,264 - +0.1
851,264 - -0.6
851,267 - +1.6
851,268 + +1.6
851,268 + -0.1
851,269 - +1.3
851,269 - -1.8
851,276 - -0.7
851,293 + -0.8
851,382 + MMP_RS04475 0.13 -3.1
851,382 + MMP_RS04475 0.13 +0.5
851,444 - MMP_RS04475 0.32 +1.2
851,484 - MMP_RS04475 0.45 +0.1
851,486 - MMP_RS04475 0.45 -0.6
851,513 + MMP_RS04475 0.54 +0.9
851,934 - -0.7
851,944 - +0.7
851,945 + -1.5
851,957 + +2.2
851,966 - -2.6
851,971 - -1.3
851,972 + +0.4
851,975 - +0.5
851,976 + -1.1
851,976 + -0.2
851,976 + +1.9
851,998 - -2.0
852,002 - +0.7
852,041 - -0.6
852,046 - +1.2
852,051 - +1.0
852,051 - -0.4
852,051 - +0.9
852,051 - +1.7
852,054 + -0.3
852,056 - -0.8
852,057 + -2.0
852,057 + +0.3
852,074 + -0.3
852,102 - -2.6
852,102 - -3.9
852,103 + -1.9
852,105 + -1.6
852,179 - -0.2
852,180 + -3.4
852,247 - -1.7
852,248 + -2.5
852,260 - -0.9
852,265 - -0.8
852,319 + -2.0
852,421 - MMP_RS04480 0.14 -3.4
852,422 + MMP_RS04480 0.14 -2.8
852,428 + MMP_RS04480 0.15 -0.8
852,428 + MMP_RS04480 0.15 -2.7
852,443 - MMP_RS04480 0.16 -2.6
852,451 + MMP_RS04480 0.16 -3.3
852,453 - MMP_RS04480 0.17 -1.4
852,454 + MMP_RS04480 0.17 -1.3
852,454 + MMP_RS04480 0.17 -2.1
852,454 + MMP_RS04480 0.17 -1.7
852,463 - MMP_RS04480 0.17 -0.6
852,500 - MMP_RS04480 0.20 -0.4
852,533 + MMP_RS04480 0.23 +1.0
852,533 + MMP_RS04480 0.23 +0.1
852,622 - MMP_RS04480 0.30 -3.1
852,627 - MMP_RS04480 0.30 -0.9
852,632 + MMP_RS04480 0.30 -2.3
852,741 + MMP_RS04480 0.39 -1.6
852,752 - MMP_RS04480 0.40 -5.2
852,753 + MMP_RS04480 0.40 -1.3
852,757 - MMP_RS04480 0.40 -0.5
852,812 + MMP_RS04480 0.44 -2.0
852,840 + MMP_RS04480 0.46 -0.4
852,858 + MMP_RS04480 0.48 -1.1
852,953 - MMP_RS04480 0.55 -2.5
852,953 - MMP_RS04480 0.55 -0.3
852,954 + MMP_RS04480 0.55 -3.1
853,077 - MMP_RS04480 0.65 -1.3
853,077 - MMP_RS04480 0.65 -2.4
853,078 + MMP_RS04480 0.65 -1.5
853,129 + MMP_RS04480 0.69 -2.2
853,131 - MMP_RS04480 0.69 -1.5
853,131 - MMP_RS04480 0.69 -1.7
853,132 + MMP_RS04480 0.69 -1.0
853,214 + MMP_RS04480 0.75 -0.9
853,245 + MMP_RS04480 0.77 -0.3
853,248 - MMP_RS04480 0.78 -1.2
853,248 - MMP_RS04480 0.78 -3.0
853,249 + MMP_RS04480 0.78 -1.9
853,255 - MMP_RS04480 0.78 -0.7
853,299 - MMP_RS04480 0.82 -0.6
853,300 + MMP_RS04480 0.82 -1.9
853,362 - MMP_RS04480 0.86 -2.0
853,478 + -1.2
853,495 - -0.1
853,495 - -1.5
853,496 + -0.9
853,580 + +0.1
853,600 - +0.4
853,601 + -1.6
853,601 + +0.3
853,601 + -1.7
853,602 - -0.4
853,602 - +0.4
853,603 + -3.6
853,604 - -1.2
853,605 + -1.9
853,735 + MMP_RS04485 0.24 -1.6
853,782 - MMP_RS04485 0.29 -0.1
853,783 + MMP_RS04485 0.30 -1.8
853,787 - MMP_RS04485 0.30 -0.3
853,788 + MMP_RS04485 0.30 -2.0
853,788 + MMP_RS04485 0.30 -0.6
853,945 - MMP_RS04485 0.49 +0.8
853,945 - MMP_RS04485 0.49 -1.4
854,007 + MMP_RS04485 0.57 -1.5
854,007 + MMP_RS04485 0.57 -2.4
854,008 - MMP_RS04485 0.57 -1.5
854,009 + MMP_RS04485 0.57 -2.0
854,011 - MMP_RS04485 0.57 -3.8
854,032 - MMP_RS04485 0.60 -1.7
854,097 + MMP_RS04485 0.68 -1.6
854,097 + MMP_RS04485 0.68 -2.2
854,167 + MMP_RS04485 0.76 -2.2
854,175 - MMP_RS04485 0.77 -1.5
854,177 - MMP_RS04485 0.77 -1.3
854,178 + MMP_RS04485 0.77 -1.0
854,178 + MMP_RS04485 0.77 -0.7
854,178 + MMP_RS04485 0.77 -0.8
854,178 + MMP_RS04485 0.77 -0.9
854,178 + MMP_RS04485 0.77 -0.4
854,279 - MMP_RS04485 0.90 -2.0
854,303 - +0.1
854,306 - -1.3
854,306 - -3.5
854,346 - -3.7
854,425 + -1.6
854,428 - -1.3
854,428 - +1.3
854,428 - +1.1
854,428 - -0.3
854,429 + -0.3
854,429 + -1.0
854,429 + -1.4
854,429 + +0.5
854,429 + +1.5
854,429 + -0.3
854,430 - -1.2
854,431 + +0.4
854,431 + +0.5
854,481 - -2.3
854,486 - +1.1
854,492 + -1.8
854,492 + -1.0

Or see this region's nucleotide sequence